Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1146

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1144 and EX28DRAFT_1145 are separated by 11 nucleotidesEX28DRAFT_1145 and EX28DRAFT_1146 are separated by 9 nucleotidesEX28DRAFT_1146 and EX28DRAFT_1147 overlap by 11 nucleotidesEX28DRAFT_1147 and EX28DRAFT_1148 are separated by 0 nucleotidesEX28DRAFT_1148 and EX28DRAFT_1149 are separated by 28 nucleotides EX28DRAFT_1144: EX28DRAFT_1144 - Uncharacterized protein conserved in bacteria, at 1,162,647 to 1,163,864 _1144 EX28DRAFT_1145: EX28DRAFT_1145 - hypothetical protein, at 1,163,876 to 1,164,775 _1145 EX28DRAFT_1146: EX28DRAFT_1146 - Serine phosphatase RsbU, regulator of sigma subunit, at 1,164,785 to 1,165,999 _1146 EX28DRAFT_1147: EX28DRAFT_1147 - anti-anti-sigma factor, at 1,165,989 to 1,166,327 _1147 EX28DRAFT_1148: EX28DRAFT_1148 - Anti-sigma regulatory factor (Ser/Thr protein kinase), at 1,166,328 to 1,166,753 _1148 EX28DRAFT_1149: EX28DRAFT_1149 - 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases, at 1,166,782 to 1,168,269 _1149 Position (kb) 1164 1165 1166Strain fitness (log2 ratio) -3 -2 -1 0 1at 1163.789 kb on - strandat 1163.832 kb on + strandat 1163.832 kb on + strandat 1163.833 kb on - strandat 1163.859 kb on - strandat 1163.859 kb on - strandat 1163.862 kb on + strandat 1163.862 kb on + strandat 1163.862 kb on + strandat 1163.862 kb on + strandat 1163.862 kb on + strandat 1163.863 kb on - strandat 1163.863 kb on - strandat 1164.155 kb on - strand, within EX28DRAFT_1145at 1164.164 kb on + strand, within EX28DRAFT_1145at 1164.230 kb on + strand, within EX28DRAFT_1145at 1164.297 kb on - strand, within EX28DRAFT_1145at 1164.297 kb on - strand, within EX28DRAFT_1145at 1164.350 kb on + strand, within EX28DRAFT_1145at 1164.350 kb on + strand, within EX28DRAFT_1145at 1164.370 kb on + strand, within EX28DRAFT_1145at 1164.439 kb on + strand, within EX28DRAFT_1145at 1164.439 kb on + strand, within EX28DRAFT_1145at 1164.440 kb on - strand, within EX28DRAFT_1145at 1164.479 kb on + strand, within EX28DRAFT_1145at 1164.479 kb on + strand, within EX28DRAFT_1145at 1164.480 kb on - strand, within EX28DRAFT_1145at 1164.541 kb on + strand, within EX28DRAFT_1145at 1164.542 kb on - strand, within EX28DRAFT_1145at 1164.623 kb on + strand, within EX28DRAFT_1145at 1164.630 kb on - strand, within EX28DRAFT_1145at 1164.630 kb on - strand, within EX28DRAFT_1145at 1164.650 kb on + strand, within EX28DRAFT_1145at 1164.805 kb on - strandat 1164.827 kb on + strandat 1164.867 kb on - strandat 1164.909 kb on + strand, within EX28DRAFT_1146at 1164.909 kb on + strand, within EX28DRAFT_1146at 1165.019 kb on + strand, within EX28DRAFT_1146at 1165.019 kb on + strand, within EX28DRAFT_1146at 1165.019 kb on + strand, within EX28DRAFT_1146at 1165.020 kb on - strand, within EX28DRAFT_1146at 1165.059 kb on + strand, within EX28DRAFT_1146at 1165.150 kb on + strand, within EX28DRAFT_1146at 1165.151 kb on - strand, within EX28DRAFT_1146at 1165.151 kb on - strand, within EX28DRAFT_1146at 1165.290 kb on - strand, within EX28DRAFT_1146at 1165.404 kb on + strand, within EX28DRAFT_1146at 1165.405 kb on - strand, within EX28DRAFT_1146at 1165.522 kb on - strand, within EX28DRAFT_1146at 1165.637 kb on - strand, within EX28DRAFT_1146at 1165.673 kb on + strand, within EX28DRAFT_1146at 1165.673 kb on + strand, within EX28DRAFT_1146at 1165.673 kb on + strand, within EX28DRAFT_1146at 1165.674 kb on - strand, within EX28DRAFT_1146at 1165.674 kb on - strand, within EX28DRAFT_1146at 1165.761 kb on + strand, within EX28DRAFT_1146at 1165.761 kb on + strand, within EX28DRAFT_1146at 1165.962 kb on + strandat 1165.998 kb on - strandat 1166.119 kb on + strand, within EX28DRAFT_1147at 1166.119 kb on + strand, within EX28DRAFT_1147at 1166.246 kb on + strand, within EX28DRAFT_1147at 1166.246 kb on + strand, within EX28DRAFT_1147at 1166.247 kb on - strand, within EX28DRAFT_1147at 1166.247 kb on - strand, within EX28DRAFT_1147at 1166.275 kb on + strand, within EX28DRAFT_1147at 1166.287 kb on - strand, within EX28DRAFT_1147at 1166.749 kb on + strandat 1166.749 kb on + strandat 1166.750 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,163,789 - -2.8
1,163,832 + +0.4
1,163,832 + -1.9
1,163,833 - -0.4
1,163,859 - -0.2
1,163,859 - +0.0
1,163,862 + +0.1
1,163,862 + -0.4
1,163,862 + -0.6
1,163,862 + -0.2
1,163,862 + -0.1
1,163,863 - +0.2
1,163,863 - -0.5
1,164,155 - EX28DRAFT_1145 0.31 -0.2
1,164,164 + EX28DRAFT_1145 0.32 +0.6
1,164,230 + EX28DRAFT_1145 0.39 -0.2
1,164,297 - EX28DRAFT_1145 0.47 +0.4
1,164,297 - EX28DRAFT_1145 0.47 +0.5
1,164,350 + EX28DRAFT_1145 0.53 -0.6
1,164,350 + EX28DRAFT_1145 0.53 +0.0
1,164,370 + EX28DRAFT_1145 0.55 -0.2
1,164,439 + EX28DRAFT_1145 0.63 +0.2
1,164,439 + EX28DRAFT_1145 0.63 +0.1
1,164,440 - EX28DRAFT_1145 0.63 +0.1
1,164,479 + EX28DRAFT_1145 0.67 -0.3
1,164,479 + EX28DRAFT_1145 0.67 +0.4
1,164,480 - EX28DRAFT_1145 0.67 -0.0
1,164,541 + EX28DRAFT_1145 0.74 +0.3
1,164,542 - EX28DRAFT_1145 0.74 +0.3
1,164,623 + EX28DRAFT_1145 0.83 +0.4
1,164,630 - EX28DRAFT_1145 0.84 +0.2
1,164,630 - EX28DRAFT_1145 0.84 -0.1
1,164,650 + EX28DRAFT_1145 0.86 -0.1
1,164,805 - -1.3
1,164,827 + -0.6
1,164,867 - +1.1
1,164,909 + EX28DRAFT_1146 0.10 -0.4
1,164,909 + EX28DRAFT_1146 0.10 -0.0
1,165,019 + EX28DRAFT_1146 0.19 +0.1
1,165,019 + EX28DRAFT_1146 0.19 +0.0
1,165,019 + EX28DRAFT_1146 0.19 -0.7
1,165,020 - EX28DRAFT_1146 0.19 -0.8
1,165,059 + EX28DRAFT_1146 0.23 +1.5
1,165,150 + EX28DRAFT_1146 0.30 +0.5
1,165,151 - EX28DRAFT_1146 0.30 -0.4
1,165,151 - EX28DRAFT_1146 0.30 -1.6
1,165,290 - EX28DRAFT_1146 0.42 +0.3
1,165,404 + EX28DRAFT_1146 0.51 +0.2
1,165,405 - EX28DRAFT_1146 0.51 +0.5
1,165,522 - EX28DRAFT_1146 0.61 -0.1
1,165,637 - EX28DRAFT_1146 0.70 -1.0
1,165,673 + EX28DRAFT_1146 0.73 +0.2
1,165,673 + EX28DRAFT_1146 0.73 -2.0
1,165,673 + EX28DRAFT_1146 0.73 -0.5
1,165,674 - EX28DRAFT_1146 0.73 -0.1
1,165,674 - EX28DRAFT_1146 0.73 -0.1
1,165,761 + EX28DRAFT_1146 0.80 -0.3
1,165,761 + EX28DRAFT_1146 0.80 -0.6
1,165,962 + +0.0
1,165,998 - +0.2
1,166,119 + EX28DRAFT_1147 0.38 +1.1
1,166,119 + EX28DRAFT_1147 0.38 +0.3
1,166,246 + EX28DRAFT_1147 0.76 -0.2
1,166,246 + EX28DRAFT_1147 0.76 -0.2
1,166,247 - EX28DRAFT_1147 0.76 -0.2
1,166,247 - EX28DRAFT_1147 0.76 -0.1
1,166,275 + EX28DRAFT_1147 0.84 +0.6
1,166,287 - EX28DRAFT_1147 0.88 +0.8
1,166,749 + +0.9
1,166,749 + +0.1
1,166,750 - -1.5

Or see this region's nucleotide sequence