Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1111

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1110 and EX28DRAFT_1111 are separated by 133 nucleotidesEX28DRAFT_1111 and EX28DRAFT_1112 overlap by 4 nucleotidesEX28DRAFT_1112 and EX28DRAFT_1113 overlap by 8 nucleotides EX28DRAFT_1110: EX28DRAFT_1110 - Transcriptional regulator, at 1,122,749 to 1,123,654 _1110 EX28DRAFT_1111: EX28DRAFT_1111 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 1,123,788 to 1,124,537 _1111 EX28DRAFT_1112: EX28DRAFT_1112 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 1,124,534 to 1,125,463 _1112 EX28DRAFT_1113: EX28DRAFT_1113 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 1,125,456 to 1,126,442 _1113 Position (kb) 1123 1124 1125Strain fitness (log2 ratio) -2 -1 0 1at 1122.793 kb on + strandat 1122.794 kb on - strandat 1122.794 kb on - strandat 1122.794 kb on - strandat 1122.802 kb on + strandat 1122.976 kb on + strand, within EX28DRAFT_1110at 1122.977 kb on - strand, within EX28DRAFT_1110at 1122.996 kb on + strand, within EX28DRAFT_1110at 1122.996 kb on + strand, within EX28DRAFT_1110at 1122.996 kb on + strand, within EX28DRAFT_1110at 1123.077 kb on + strand, within EX28DRAFT_1110at 1123.078 kb on - strand, within EX28DRAFT_1110at 1123.082 kb on - strand, within EX28DRAFT_1110at 1123.238 kb on + strand, within EX28DRAFT_1110at 1123.239 kb on - strand, within EX28DRAFT_1110at 1123.313 kb on - strand, within EX28DRAFT_1110at 1123.462 kb on - strand, within EX28DRAFT_1110at 1123.462 kb on - strand, within EX28DRAFT_1110at 1123.518 kb on - strand, within EX28DRAFT_1110at 1123.573 kb on + strandat 1123.597 kb on + strandat 1123.781 kb on - strandat 1123.781 kb on - strandat 1123.890 kb on + strand, within EX28DRAFT_1111at 1123.891 kb on - strand, within EX28DRAFT_1111at 1123.919 kb on - strand, within EX28DRAFT_1111at 1124.752 kb on - strand, within EX28DRAFT_1112at 1124.752 kb on - strand, within EX28DRAFT_1112at 1124.814 kb on + strand, within EX28DRAFT_1112at 1124.815 kb on - strand, within EX28DRAFT_1112at 1124.815 kb on - strand, within EX28DRAFT_1112at 1124.815 kb on - strand, within EX28DRAFT_1112at 1124.855 kb on + strand, within EX28DRAFT_1112at 1124.856 kb on - strand, within EX28DRAFT_1112at 1124.870 kb on + strand, within EX28DRAFT_1112at 1124.877 kb on + strand, within EX28DRAFT_1112at 1124.877 kb on + strand, within EX28DRAFT_1112at 1124.877 kb on + strand, within EX28DRAFT_1112at 1124.877 kb on + strand, within EX28DRAFT_1112at 1124.877 kb on + strand, within EX28DRAFT_1112at 1124.877 kb on + strand, within EX28DRAFT_1112at 1124.877 kb on + strand, within EX28DRAFT_1112at 1124.878 kb on - strand, within EX28DRAFT_1112at 1124.878 kb on - strand, within EX28DRAFT_1112at 1124.878 kb on - strand, within EX28DRAFT_1112at 1124.887 kb on + strand, within EX28DRAFT_1112at 1124.887 kb on + strand, within EX28DRAFT_1112at 1124.956 kb on + strand, within EX28DRAFT_1112at 1124.957 kb on - strand, within EX28DRAFT_1112at 1124.975 kb on - strand, within EX28DRAFT_1112at 1125.265 kb on + strand, within EX28DRAFT_1112at 1125.265 kb on + strand, within EX28DRAFT_1112at 1125.265 kb on + strand, within EX28DRAFT_1112at 1125.452 kb on + strandat 1125.453 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,122,793 + +0.7
1,122,794 - -0.0
1,122,794 - +0.2
1,122,794 - -0.3
1,122,802 + -0.7
1,122,976 + EX28DRAFT_1110 0.25 -1.2
1,122,977 - EX28DRAFT_1110 0.25 +1.1
1,122,996 + EX28DRAFT_1110 0.27 -0.4
1,122,996 + EX28DRAFT_1110 0.27 -0.1
1,122,996 + EX28DRAFT_1110 0.27 +0.6
1,123,077 + EX28DRAFT_1110 0.36 -1.1
1,123,078 - EX28DRAFT_1110 0.36 -0.1
1,123,082 - EX28DRAFT_1110 0.37 -0.4
1,123,238 + EX28DRAFT_1110 0.54 +0.2
1,123,239 - EX28DRAFT_1110 0.54 -2.1
1,123,313 - EX28DRAFT_1110 0.62 -0.0
1,123,462 - EX28DRAFT_1110 0.79 +0.1
1,123,462 - EX28DRAFT_1110 0.79 -0.2
1,123,518 - EX28DRAFT_1110 0.85 +0.1
1,123,573 + +0.5
1,123,597 + -0.0
1,123,781 - -0.2
1,123,781 - -0.3
1,123,890 + EX28DRAFT_1111 0.14 -0.3
1,123,891 - EX28DRAFT_1111 0.14 -0.2
1,123,919 - EX28DRAFT_1111 0.17 -1.0
1,124,752 - EX28DRAFT_1112 0.23 +0.2
1,124,752 - EX28DRAFT_1112 0.23 +0.2
1,124,814 + EX28DRAFT_1112 0.30 +0.3
1,124,815 - EX28DRAFT_1112 0.30 +0.5
1,124,815 - EX28DRAFT_1112 0.30 +0.0
1,124,815 - EX28DRAFT_1112 0.30 -0.2
1,124,855 + EX28DRAFT_1112 0.35 +0.4
1,124,856 - EX28DRAFT_1112 0.35 -0.3
1,124,870 + EX28DRAFT_1112 0.36 -0.8
1,124,877 + EX28DRAFT_1112 0.37 -0.2
1,124,877 + EX28DRAFT_1112 0.37 +1.4
1,124,877 + EX28DRAFT_1112 0.37 -0.1
1,124,877 + EX28DRAFT_1112 0.37 +0.1
1,124,877 + EX28DRAFT_1112 0.37 +0.1
1,124,877 + EX28DRAFT_1112 0.37 +0.2
1,124,877 + EX28DRAFT_1112 0.37 -0.4
1,124,878 - EX28DRAFT_1112 0.37 +1.1
1,124,878 - EX28DRAFT_1112 0.37 -0.2
1,124,878 - EX28DRAFT_1112 0.37 -0.2
1,124,887 + EX28DRAFT_1112 0.38 -0.3
1,124,887 + EX28DRAFT_1112 0.38 +0.3
1,124,956 + EX28DRAFT_1112 0.45 -0.5
1,124,957 - EX28DRAFT_1112 0.45 -0.4
1,124,975 - EX28DRAFT_1112 0.47 +0.1
1,125,265 + EX28DRAFT_1112 0.79 -0.1
1,125,265 + EX28DRAFT_1112 0.79 +0.2
1,125,265 + EX28DRAFT_1112 0.79 +1.5
1,125,452 + +0.1
1,125,453 - +0.2

Or see this region's nucleotide sequence