Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1072 and EX28DRAFT_1073 overlap by 4 nucleotides EX28DRAFT_1073 and EX28DRAFT_1074 are separated by 18 nucleotides
EX28DRAFT_1072: EX28DRAFT_1072 - amidase, hydantoinase/carbamoylase family, at 1,084,884 to 1,086,110
_1072
EX28DRAFT_1073: EX28DRAFT_1073 - L-2-amino-thiazoline-4-carboxylic acid hydrolase, at 1,086,107 to 1,086,589
_1073
EX28DRAFT_1074: EX28DRAFT_1074 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 1,086,608 to 1,087,765
_1074
Position (kb)
1086
1087 Strain fitness (log2 ratio)
-2
-1
0
1 at 1085.207 kb on + strand, within EX28DRAFT_1072 at 1085.208 kb on - strand, within EX28DRAFT_1072 at 1085.247 kb on - strand, within EX28DRAFT_1072 at 1085.468 kb on + strand, within EX28DRAFT_1072 at 1085.783 kb on - strand, within EX28DRAFT_1072 at 1085.843 kb on + strand, within EX28DRAFT_1072 at 1085.928 kb on - strand, within EX28DRAFT_1072 at 1085.928 kb on - strand, within EX28DRAFT_1072 at 1085.928 kb on - strand, within EX28DRAFT_1072 at 1085.999 kb on + strand at 1086.201 kb on + strand, within EX28DRAFT_1073 at 1086.202 kb on - strand, within EX28DRAFT_1073 at 1086.207 kb on - strand, within EX28DRAFT_1073 at 1086.207 kb on - strand, within EX28DRAFT_1073 at 1086.274 kb on - strand, within EX28DRAFT_1073 at 1086.274 kb on - strand, within EX28DRAFT_1073 at 1086.274 kb on - strand, within EX28DRAFT_1073 at 1086.274 kb on - strand, within EX28DRAFT_1073 at 1086.306 kb on + strand, within EX28DRAFT_1073 at 1086.307 kb on - strand, within EX28DRAFT_1073 at 1086.307 kb on - strand, within EX28DRAFT_1073 at 1086.307 kb on - strand, within EX28DRAFT_1073 at 1086.312 kb on + strand, within EX28DRAFT_1073 at 1086.312 kb on + strand, within EX28DRAFT_1073 at 1086.312 kb on + strand, within EX28DRAFT_1073 at 1086.313 kb on - strand, within EX28DRAFT_1073 at 1086.313 kb on - strand, within EX28DRAFT_1073 at 1086.313 kb on - strand, within EX28DRAFT_1073 at 1086.373 kb on - strand, within EX28DRAFT_1073 at 1086.373 kb on - strand, within EX28DRAFT_1073 at 1086.581 kb on - strand at 1086.698 kb on - strand at 1086.828 kb on + strand, within EX28DRAFT_1074 at 1086.828 kb on + strand, within EX28DRAFT_1074 at 1086.876 kb on + strand, within EX28DRAFT_1074 at 1086.877 kb on - strand, within EX28DRAFT_1074 at 1087.037 kb on - strand, within EX28DRAFT_1074 at 1087.407 kb on + strand, within EX28DRAFT_1074 at 1087.408 kb on - strand, within EX28DRAFT_1074 at 1087.411 kb on + strand, within EX28DRAFT_1074 at 1087.412 kb on - strand, within EX28DRAFT_1074 at 1087.412 kb on - strand, within EX28DRAFT_1074 at 1087.583 kb on - strand, within EX28DRAFT_1074 at 1087.586 kb on - strand, within EX28DRAFT_1074
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,085,207 + EX28DRAFT_1072 0.26 -0.3 1,085,208 - EX28DRAFT_1072 0.26 -0.7 1,085,247 - EX28DRAFT_1072 0.30 +0.9 1,085,468 + EX28DRAFT_1072 0.48 -0.2 1,085,783 - EX28DRAFT_1072 0.73 +1.3 1,085,843 + EX28DRAFT_1072 0.78 -0.7 1,085,928 - EX28DRAFT_1072 0.85 -0.5 1,085,928 - EX28DRAFT_1072 0.85 -0.2 1,085,928 - EX28DRAFT_1072 0.85 -0.1 1,085,999 + -2.3 1,086,201 + EX28DRAFT_1073 0.19 -0.4 1,086,202 - EX28DRAFT_1073 0.20 -0.4 1,086,207 - EX28DRAFT_1073 0.21 -0.4 1,086,207 - EX28DRAFT_1073 0.21 -0.0 1,086,274 - EX28DRAFT_1073 0.35 -0.9 1,086,274 - EX28DRAFT_1073 0.35 -1.0 1,086,274 - EX28DRAFT_1073 0.35 +0.1 1,086,274 - EX28DRAFT_1073 0.35 +0.8 1,086,306 + EX28DRAFT_1073 0.41 -0.1 1,086,307 - EX28DRAFT_1073 0.41 -0.0 1,086,307 - EX28DRAFT_1073 0.41 -0.4 1,086,307 - EX28DRAFT_1073 0.41 +0.1 1,086,312 + EX28DRAFT_1073 0.42 -0.2 1,086,312 + EX28DRAFT_1073 0.42 -0.9 1,086,312 + EX28DRAFT_1073 0.42 +0.2 1,086,313 - EX28DRAFT_1073 0.43 -0.2 1,086,313 - EX28DRAFT_1073 0.43 -1.3 1,086,313 - EX28DRAFT_1073 0.43 +0.3 1,086,373 - EX28DRAFT_1073 0.55 -1.7 1,086,373 - EX28DRAFT_1073 0.55 -1.2 1,086,581 - -0.9 1,086,698 - +0.2 1,086,828 + EX28DRAFT_1074 0.19 -0.3 1,086,828 + EX28DRAFT_1074 0.19 +0.5 1,086,876 + EX28DRAFT_1074 0.23 -0.4 1,086,877 - EX28DRAFT_1074 0.23 +1.3 1,087,037 - EX28DRAFT_1074 0.37 +0.1 1,087,407 + EX28DRAFT_1074 0.69 -0.6 1,087,408 - EX28DRAFT_1074 0.69 +0.1 1,087,411 + EX28DRAFT_1074 0.69 +0.3 1,087,412 - EX28DRAFT_1074 0.69 +0.2 1,087,412 - EX28DRAFT_1074 0.69 -0.9 1,087,583 - EX28DRAFT_1074 0.84 -0.2 1,087,586 - EX28DRAFT_1074 0.84 -0.3
Or see this region's nucleotide sequence