Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1051

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1050 and EX28DRAFT_1051 overlap by 4 nucleotidesEX28DRAFT_1051 and EX28DRAFT_1052 are separated by 16 nucleotides EX28DRAFT_1050: EX28DRAFT_1050 - luciferase family oxidoreductase, group 1, at 1,061,665 to 1,062,666 _1050 EX28DRAFT_1051: EX28DRAFT_1051 - amidohydrolase, at 1,062,663 to 1,063,784 _1051 EX28DRAFT_1052: EX28DRAFT_1052 - FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family, at 1,063,801 to 1,065,117 _1052 Position (kb) 1062 1063 1064Strain fitness (log2 ratio) -3 -2 -1 0 1at 1061.691 kb on + strandat 1061.692 kb on - strandat 1061.922 kb on + strand, within EX28DRAFT_1050at 1061.923 kb on - strand, within EX28DRAFT_1050at 1062.288 kb on + strand, within EX28DRAFT_1050at 1062.439 kb on + strand, within EX28DRAFT_1050at 1062.645 kb on + strandat 1062.662 kb on + strandat 1062.782 kb on + strand, within EX28DRAFT_1051at 1062.796 kb on - strand, within EX28DRAFT_1051at 1062.863 kb on + strand, within EX28DRAFT_1051at 1062.864 kb on - strand, within EX28DRAFT_1051at 1062.905 kb on + strand, within EX28DRAFT_1051at 1063.170 kb on + strand, within EX28DRAFT_1051at 1063.507 kb on - strand, within EX28DRAFT_1051at 1063.690 kb on + strandat 1063.691 kb on - strandat 1063.706 kb on + strandat 1063.724 kb on - strandat 1063.724 kb on - strandat 1063.783 kb on - strandat 1063.783 kb on - strandat 1063.800 kb on + strandat 1063.800 kb on + strandat 1063.800 kb on + strandat 1063.801 kb on - strandat 1063.801 kb on - strandat 1063.858 kb on - strandat 1063.981 kb on + strand, within EX28DRAFT_1052at 1063.981 kb on + strand, within EX28DRAFT_1052at 1063.983 kb on + strand, within EX28DRAFT_1052at 1064.263 kb on + strand, within EX28DRAFT_1052at 1064.323 kb on - strand, within EX28DRAFT_1052at 1064.572 kb on - strand, within EX28DRAFT_1052at 1064.595 kb on - strand, within EX28DRAFT_1052at 1064.686 kb on - strand, within EX28DRAFT_1052at 1064.686 kb on - strand, within EX28DRAFT_1052at 1064.702 kb on - strand, within EX28DRAFT_1052

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,061,691 + +1.1
1,061,692 - -0.1
1,061,922 + EX28DRAFT_1050 0.26 +0.2
1,061,923 - EX28DRAFT_1050 0.26 -2.0
1,062,288 + EX28DRAFT_1050 0.62 -2.9
1,062,439 + EX28DRAFT_1050 0.77 -0.8
1,062,645 + +0.0
1,062,662 + +0.3
1,062,782 + EX28DRAFT_1051 0.11 +0.1
1,062,796 - EX28DRAFT_1051 0.12 +0.2
1,062,863 + EX28DRAFT_1051 0.18 -0.5
1,062,864 - EX28DRAFT_1051 0.18 -0.7
1,062,905 + EX28DRAFT_1051 0.22 -0.7
1,063,170 + EX28DRAFT_1051 0.45 -0.3
1,063,507 - EX28DRAFT_1051 0.75 +0.5
1,063,690 + -0.4
1,063,691 - +0.7
1,063,706 + +0.8
1,063,724 - +0.2
1,063,724 - +0.2
1,063,783 - -0.2
1,063,783 - +0.3
1,063,800 + +0.4
1,063,800 + +0.4
1,063,800 + -0.3
1,063,801 - +0.7
1,063,801 - +0.1
1,063,858 - +0.2
1,063,981 + EX28DRAFT_1052 0.14 -1.1
1,063,981 + EX28DRAFT_1052 0.14 -0.5
1,063,983 + EX28DRAFT_1052 0.14 -0.2
1,064,263 + EX28DRAFT_1052 0.35 -0.1
1,064,323 - EX28DRAFT_1052 0.40 -0.2
1,064,572 - EX28DRAFT_1052 0.59 -0.1
1,064,595 - EX28DRAFT_1052 0.60 -0.5
1,064,686 - EX28DRAFT_1052 0.67 -0.4
1,064,686 - EX28DRAFT_1052 0.67 +0.2
1,064,702 - EX28DRAFT_1052 0.68 -0.3

Or see this region's nucleotide sequence