Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1048 and EX28DRAFT_1049 are separated by 345 nucleotides EX28DRAFT_1049 and EX28DRAFT_1050 are separated by 110 nucleotides EX28DRAFT_1050 and EX28DRAFT_1051 overlap by 4 nucleotides
EX28DRAFT_1048: EX28DRAFT_1048 - PAS domain S-box, at 1,059,134 to 1,060,669
_1048
EX28DRAFT_1049: EX28DRAFT_1049 - Adenylate kinase and related kinases, at 1,061,015 to 1,061,554
_1049
EX28DRAFT_1050: EX28DRAFT_1050 - luciferase family oxidoreductase, group 1, at 1,061,665 to 1,062,666
_1050
EX28DRAFT_1051: EX28DRAFT_1051 - amidohydrolase, at 1,062,663 to 1,063,784
_1051
Position (kb)
1061
1062
1063 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1061.000 kb on + strand at 1061.001 kb on - strand at 1061.097 kb on - strand, within EX28DRAFT_1049 at 1061.118 kb on - strand, within EX28DRAFT_1049 at 1061.216 kb on + strand, within EX28DRAFT_1049 at 1061.217 kb on - strand, within EX28DRAFT_1049 at 1061.332 kb on + strand, within EX28DRAFT_1049 at 1061.333 kb on - strand, within EX28DRAFT_1049 at 1061.482 kb on + strand, within EX28DRAFT_1049 at 1061.538 kb on + strand at 1061.539 kb on - strand at 1061.539 kb on - strand at 1061.546 kb on + strand at 1061.553 kb on - strand at 1061.553 kb on - strand at 1061.563 kb on + strand at 1061.563 kb on + strand at 1061.563 kb on + strand at 1061.564 kb on - strand at 1061.564 kb on - strand at 1061.565 kb on + strand at 1061.565 kb on + strand at 1061.568 kb on - strand at 1061.586 kb on + strand at 1061.628 kb on - strand at 1061.691 kb on + strand at 1061.692 kb on - strand at 1061.922 kb on + strand, within EX28DRAFT_1050 at 1061.923 kb on - strand, within EX28DRAFT_1050 at 1062.288 kb on + strand, within EX28DRAFT_1050 at 1062.439 kb on + strand, within EX28DRAFT_1050 at 1062.645 kb on + strand at 1062.662 kb on + strand at 1062.782 kb on + strand, within EX28DRAFT_1051 at 1062.796 kb on - strand, within EX28DRAFT_1051 at 1062.863 kb on + strand, within EX28DRAFT_1051 at 1062.864 kb on - strand, within EX28DRAFT_1051 at 1062.905 kb on + strand, within EX28DRAFT_1051 at 1063.170 kb on + strand, within EX28DRAFT_1051 at 1063.507 kb on - strand, within EX28DRAFT_1051
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,061,000 + -0.6 1,061,001 - -0.1 1,061,097 - EX28DRAFT_1049 0.15 +0.2 1,061,118 - EX28DRAFT_1049 0.19 +0.1 1,061,216 + EX28DRAFT_1049 0.37 -0.0 1,061,217 - EX28DRAFT_1049 0.37 +0.1 1,061,332 + EX28DRAFT_1049 0.59 -0.1 1,061,333 - EX28DRAFT_1049 0.59 -0.6 1,061,482 + EX28DRAFT_1049 0.86 -0.0 1,061,538 + -0.4 1,061,539 - -0.4 1,061,539 - -0.0 1,061,546 + -0.4 1,061,553 - -0.5 1,061,553 - -0.4 1,061,563 + -0.6 1,061,563 + -0.5 1,061,563 + -0.5 1,061,564 - +0.4 1,061,564 - -1.3 1,061,565 + -0.2 1,061,565 + +0.1 1,061,568 - -0.5 1,061,586 + +0.1 1,061,628 - +2.4 1,061,691 + +1.1 1,061,692 - -0.1 1,061,922 + EX28DRAFT_1050 0.26 +0.2 1,061,923 - EX28DRAFT_1050 0.26 -2.0 1,062,288 + EX28DRAFT_1050 0.62 -2.9 1,062,439 + EX28DRAFT_1050 0.77 -0.8 1,062,645 + +0.0 1,062,662 + +0.3 1,062,782 + EX28DRAFT_1051 0.11 +0.1 1,062,796 - EX28DRAFT_1051 0.12 +0.2 1,062,863 + EX28DRAFT_1051 0.18 -0.5 1,062,864 - EX28DRAFT_1051 0.18 -0.7 1,062,905 + EX28DRAFT_1051 0.22 -0.7 1,063,170 + EX28DRAFT_1051 0.45 -0.3 1,063,507 - EX28DRAFT_1051 0.75 +0.5
Or see this region's nucleotide sequence