Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1007

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1006 and EX28DRAFT_1007 are separated by 42 nucleotidesEX28DRAFT_1007 and EX28DRAFT_1008 are separated by 245 nucleotidesEX28DRAFT_1008 and EX28DRAFT_1009 are separated by 428 nucleotides EX28DRAFT_1006: EX28DRAFT_1006 - Superfamily II DNA and RNA helicases, at 1,011,714 to 1,013,087 _1006 EX28DRAFT_1007: EX28DRAFT_1007 - Predicted ATPase of the PP-loop superfamily implicated in cell cycle control, at 1,013,130 to 1,014,065 _1007 EX28DRAFT_1008: EX28DRAFT_1008 - Cupin domain, at 1,014,311 to 1,014,631 _1008 EX28DRAFT_1009: EX28DRAFT_1009 - hypothetical protein, at 1,015,060 to 1,015,287 _1009 Position (kb) 1013 1014 1015Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1012.154 kb on - strand, within EX28DRAFT_1006at 1012.342 kb on + strand, within EX28DRAFT_1006at 1012.342 kb on + strand, within EX28DRAFT_1006at 1012.342 kb on + strand, within EX28DRAFT_1006at 1012.342 kb on + strand, within EX28DRAFT_1006at 1012.342 kb on + strand, within EX28DRAFT_1006at 1012.342 kb on + strand, within EX28DRAFT_1006at 1012.343 kb on - strand, within EX28DRAFT_1006at 1012.343 kb on - strand, within EX28DRAFT_1006at 1012.343 kb on - strand, within EX28DRAFT_1006at 1012.343 kb on - strand, within EX28DRAFT_1006at 1012.634 kb on + strand, within EX28DRAFT_1006at 1012.635 kb on - strand, within EX28DRAFT_1006at 1012.635 kb on - strand, within EX28DRAFT_1006at 1012.799 kb on + strand, within EX28DRAFT_1006at 1012.800 kb on - strand, within EX28DRAFT_1006at 1012.912 kb on + strand, within EX28DRAFT_1006at 1012.913 kb on - strand, within EX28DRAFT_1006at 1012.913 kb on - strand, within EX28DRAFT_1006at 1012.913 kb on - strand, within EX28DRAFT_1006at 1012.913 kb on - strand, within EX28DRAFT_1006at 1012.915 kb on + strand, within EX28DRAFT_1006at 1012.915 kb on + strand, within EX28DRAFT_1006at 1012.990 kb on - strandat 1013.019 kb on - strandat 1013.085 kb on + strandat 1013.132 kb on - strandat 1013.217 kb on - strandat 1013.217 kb on - strandat 1013.217 kb on - strandat 1013.280 kb on - strand, within EX28DRAFT_1007at 1013.515 kb on - strand, within EX28DRAFT_1007at 1013.582 kb on + strand, within EX28DRAFT_1007at 1013.765 kb on + strand, within EX28DRAFT_1007at 1013.765 kb on + strand, within EX28DRAFT_1007at 1013.791 kb on + strand, within EX28DRAFT_1007at 1013.906 kb on + strand, within EX28DRAFT_1007at 1013.908 kb on + strand, within EX28DRAFT_1007at 1013.908 kb on + strand, within EX28DRAFT_1007at 1013.908 kb on + strand, within EX28DRAFT_1007at 1013.908 kb on + strand, within EX28DRAFT_1007at 1013.908 kb on + strand, within EX28DRAFT_1007at 1013.909 kb on - strand, within EX28DRAFT_1007at 1013.909 kb on - strand, within EX28DRAFT_1007at 1013.909 kb on - strand, within EX28DRAFT_1007at 1014.163 kb on - strandat 1014.211 kb on + strandat 1014.212 kb on - strandat 1014.214 kb on - strandat 1014.214 kb on - strandat 1014.221 kb on + strandat 1014.222 kb on - strandat 1014.230 kb on + strandat 1014.247 kb on + strandat 1014.247 kb on + strandat 1014.250 kb on - strandat 1014.266 kb on + strandat 1014.266 kb on + strandat 1014.267 kb on - strandat 1014.267 kb on - strandat 1014.267 kb on - strandat 1014.268 kb on + strandat 1014.269 kb on - strandat 1014.284 kb on + strandat 1014.295 kb on - strandat 1014.309 kb on + strandat 1014.310 kb on - strandat 1014.368 kb on - strand, within EX28DRAFT_1008at 1014.373 kb on - strand, within EX28DRAFT_1008at 1014.442 kb on - strand, within EX28DRAFT_1008at 1014.442 kb on - strand, within EX28DRAFT_1008at 1014.502 kb on + strand, within EX28DRAFT_1008at 1014.533 kb on + strand, within EX28DRAFT_1008at 1014.533 kb on + strand, within EX28DRAFT_1008at 1014.534 kb on - strand, within EX28DRAFT_1008at 1014.536 kb on - strand, within EX28DRAFT_1008at 1014.559 kb on + strand, within EX28DRAFT_1008at 1014.706 kb on - strandat 1014.738 kb on + strandat 1014.739 kb on - strandat 1014.744 kb on - strandat 1014.744 kb on - strandat 1014.744 kb on - strandat 1014.746 kb on - strandat 1014.746 kb on - strandat 1014.902 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,012,154 - EX28DRAFT_1006 0.32 +0.2
1,012,342 + EX28DRAFT_1006 0.46 -0.3
1,012,342 + EX28DRAFT_1006 0.46 -0.8
1,012,342 + EX28DRAFT_1006 0.46 +0.6
1,012,342 + EX28DRAFT_1006 0.46 +0.0
1,012,342 + EX28DRAFT_1006 0.46 +1.0
1,012,342 + EX28DRAFT_1006 0.46 +0.5
1,012,343 - EX28DRAFT_1006 0.46 +0.2
1,012,343 - EX28DRAFT_1006 0.46 -0.2
1,012,343 - EX28DRAFT_1006 0.46 -1.0
1,012,343 - EX28DRAFT_1006 0.46 -0.1
1,012,634 + EX28DRAFT_1006 0.67 +0.1
1,012,635 - EX28DRAFT_1006 0.67 -0.1
1,012,635 - EX28DRAFT_1006 0.67 +0.3
1,012,799 + EX28DRAFT_1006 0.79 +0.1
1,012,800 - EX28DRAFT_1006 0.79 +0.5
1,012,912 + EX28DRAFT_1006 0.87 -0.5
1,012,913 - EX28DRAFT_1006 0.87 +0.5
1,012,913 - EX28DRAFT_1006 0.87 +0.1
1,012,913 - EX28DRAFT_1006 0.87 +0.1
1,012,913 - EX28DRAFT_1006 0.87 -0.7
1,012,915 + EX28DRAFT_1006 0.87 -0.7
1,012,915 + EX28DRAFT_1006 0.87 +0.3
1,012,990 - -0.7
1,013,019 - -0.1
1,013,085 + +0.8
1,013,132 - +0.1
1,013,217 - +0.3
1,013,217 - -0.7
1,013,217 - +1.1
1,013,280 - EX28DRAFT_1007 0.16 +0.3
1,013,515 - EX28DRAFT_1007 0.41 -0.6
1,013,582 + EX28DRAFT_1007 0.48 -0.0
1,013,765 + EX28DRAFT_1007 0.68 -0.7
1,013,765 + EX28DRAFT_1007 0.68 -0.7
1,013,791 + EX28DRAFT_1007 0.71 +0.4
1,013,906 + EX28DRAFT_1007 0.83 +0.0
1,013,908 + EX28DRAFT_1007 0.83 +0.4
1,013,908 + EX28DRAFT_1007 0.83 +0.1
1,013,908 + EX28DRAFT_1007 0.83 -1.0
1,013,908 + EX28DRAFT_1007 0.83 +0.1
1,013,908 + EX28DRAFT_1007 0.83 +1.2
1,013,909 - EX28DRAFT_1007 0.83 +1.6
1,013,909 - EX28DRAFT_1007 0.83 -0.2
1,013,909 - EX28DRAFT_1007 0.83 +0.1
1,014,163 - +0.1
1,014,211 + +0.0
1,014,212 - +0.2
1,014,214 - +0.1
1,014,214 - -0.3
1,014,221 + -0.3
1,014,222 - -0.2
1,014,230 + +0.3
1,014,247 + +3.4
1,014,247 + +0.4
1,014,250 - -1.0
1,014,266 + -0.4
1,014,266 + -0.1
1,014,267 - -0.3
1,014,267 - -0.8
1,014,267 - +0.5
1,014,268 + +0.4
1,014,269 - -0.1
1,014,284 + +0.2
1,014,295 - -0.6
1,014,309 + +0.1
1,014,310 - +0.0
1,014,368 - EX28DRAFT_1008 0.18 -0.7
1,014,373 - EX28DRAFT_1008 0.19 +1.1
1,014,442 - EX28DRAFT_1008 0.41 -0.4
1,014,442 - EX28DRAFT_1008 0.41 -1.8
1,014,502 + EX28DRAFT_1008 0.60 +0.5
1,014,533 + EX28DRAFT_1008 0.69 +0.3
1,014,533 + EX28DRAFT_1008 0.69 -0.4
1,014,534 - EX28DRAFT_1008 0.69 +0.1
1,014,536 - EX28DRAFT_1008 0.70 -1.4
1,014,559 + EX28DRAFT_1008 0.77 -0.1
1,014,706 - +0.2
1,014,738 + -0.0
1,014,739 - +0.1
1,014,744 - -0.5
1,014,744 - -0.3
1,014,744 - -0.5
1,014,746 - +0.2
1,014,746 - -0.1
1,014,902 - -1.7

Or see this region's nucleotide sequence