Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0993 and EX28DRAFT_0994 are separated by 112 nucleotides EX28DRAFT_0994 and EX28DRAFT_0995 are separated by 37 nucleotides
EX28DRAFT_0993: EX28DRAFT_0993 - TIGR01620 family protein, at 995,639 to 996,691
_0993
EX28DRAFT_0994: EX28DRAFT_0994 - Transcriptional regulator of aromatic amino acids metabolism, at 996,804 to 998,345
_0994
EX28DRAFT_0995: EX28DRAFT_0995 - Domain of unknown function (DUF4432), at 998,383 to 999,591
_0995
Position (kb) 996
997
998
999 Strain fitness (log2 ratio) -2
-1
0
1 at 996.381 kb on + strand, within EX28DRAFT_0993 at 996.381 kb on + strand, within EX28DRAFT_0993 at 996.395 kb on + strand, within EX28DRAFT_0993 at 996.396 kb on - strand, within EX28DRAFT_0993 at 996.434 kb on - strand, within EX28DRAFT_0993 at 996.546 kb on + strand, within EX28DRAFT_0993 at 996.705 kb on + strand at 996.706 kb on - strand at 996.764 kb on + strand at 996.764 kb on + strand at 996.765 kb on - strand at 996.765 kb on - strand at 996.871 kb on + strand at 996.875 kb on + strand at 996.876 kb on - strand at 996.886 kb on + strand at 997.004 kb on - strand, within EX28DRAFT_0994 at 997.004 kb on - strand, within EX28DRAFT_0994 at 997.004 kb on - strand, within EX28DRAFT_0994 at 997.251 kb on - strand, within EX28DRAFT_0994 at 997.251 kb on - strand, within EX28DRAFT_0994 at 997.251 kb on - strand, within EX28DRAFT_0994 at 997.297 kb on - strand, within EX28DRAFT_0994 at 997.575 kb on + strand, within EX28DRAFT_0994 at 997.598 kb on + strand, within EX28DRAFT_0994 at 997.599 kb on - strand, within EX28DRAFT_0994 at 997.722 kb on - strand, within EX28DRAFT_0994 at 997.730 kb on + strand, within EX28DRAFT_0994 at 997.872 kb on + strand, within EX28DRAFT_0994 at 997.873 kb on - strand, within EX28DRAFT_0994 at 997.902 kb on - strand, within EX28DRAFT_0994 at 998.100 kb on + strand, within EX28DRAFT_0994 at 998.192 kb on + strand at 998.193 kb on - strand at 998.385 kb on - strand at 998.492 kb on + strand at 998.492 kb on + strand at 998.493 kb on - strand at 998.493 kb on - strand at 998.536 kb on - strand, within EX28DRAFT_0995 at 998.536 kb on - strand, within EX28DRAFT_0995 at 998.576 kb on + strand, within EX28DRAFT_0995 at 998.606 kb on + strand, within EX28DRAFT_0995 at 998.638 kb on + strand, within EX28DRAFT_0995 at 998.689 kb on - strand, within EX28DRAFT_0995 at 998.792 kb on + strand, within EX28DRAFT_0995 at 998.793 kb on - strand, within EX28DRAFT_0995 at 998.909 kb on + strand, within EX28DRAFT_0995 at 998.910 kb on - strand, within EX28DRAFT_0995 at 998.910 kb on - strand, within EX28DRAFT_0995 at 998.910 kb on - strand, within EX28DRAFT_0995 at 998.990 kb on + strand, within EX28DRAFT_0995 at 998.990 kb on + strand, within EX28DRAFT_0995 at 998.991 kb on - strand, within EX28DRAFT_0995 at 999.028 kb on - strand, within EX28DRAFT_0995 at 999.114 kb on + strand, within EX28DRAFT_0995 at 999.114 kb on + strand, within EX28DRAFT_0995 at 999.141 kb on - strand, within EX28DRAFT_0995 at 999.182 kb on + strand, within EX28DRAFT_0995 at 999.252 kb on + strand, within EX28DRAFT_0995 at 999.252 kb on + strand, within EX28DRAFT_0995 at 999.253 kb on - strand, within EX28DRAFT_0995 at 999.253 kb on - strand, within EX28DRAFT_0995 at 999.254 kb on + strand, within EX28DRAFT_0995 at 999.254 kb on + strand, within EX28DRAFT_0995 at 999.255 kb on - strand, within EX28DRAFT_0995 at 999.317 kb on - strand, within EX28DRAFT_0995 at 999.317 kb on - strand, within EX28DRAFT_0995
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 996,381 + EX28DRAFT_0993 0.70 +0.8 996,381 + EX28DRAFT_0993 0.70 +0.2 996,395 + EX28DRAFT_0993 0.72 +0.6 996,396 - EX28DRAFT_0993 0.72 -0.3 996,434 - EX28DRAFT_0993 0.75 +0.4 996,546 + EX28DRAFT_0993 0.86 -0.2 996,705 + -0.1 996,706 - -0.1 996,764 + -0.2 996,764 + +0.1 996,765 - +0.2 996,765 - -0.7 996,871 + +0.1 996,875 + -1.0 996,876 - -0.7 996,886 + -0.5 997,004 - EX28DRAFT_0994 0.13 -0.1 997,004 - EX28DRAFT_0994 0.13 -0.8 997,004 - EX28DRAFT_0994 0.13 -0.4 997,251 - EX28DRAFT_0994 0.29 -0.7 997,251 - EX28DRAFT_0994 0.29 +1.0 997,251 - EX28DRAFT_0994 0.29 -0.9 997,297 - EX28DRAFT_0994 0.32 -0.6 997,575 + EX28DRAFT_0994 0.50 -0.0 997,598 + EX28DRAFT_0994 0.51 +0.1 997,599 - EX28DRAFT_0994 0.52 +0.1 997,722 - EX28DRAFT_0994 0.60 -0.7 997,730 + EX28DRAFT_0994 0.60 +0.7 997,872 + EX28DRAFT_0994 0.69 -0.2 997,873 - EX28DRAFT_0994 0.69 -1.5 997,902 - EX28DRAFT_0994 0.71 -0.5 998,100 + EX28DRAFT_0994 0.84 -0.4 998,192 + -0.4 998,193 - -0.9 998,385 - -0.5 998,492 + -1.0 998,492 + +0.2 998,493 - +0.5 998,493 - +0.2 998,536 - EX28DRAFT_0995 0.13 -0.1 998,536 - EX28DRAFT_0995 0.13 -1.8 998,576 + EX28DRAFT_0995 0.16 +0.2 998,606 + EX28DRAFT_0995 0.18 -0.2 998,638 + EX28DRAFT_0995 0.21 +0.9 998,689 - EX28DRAFT_0995 0.25 +0.1 998,792 + EX28DRAFT_0995 0.34 +0.3 998,793 - EX28DRAFT_0995 0.34 -0.5 998,909 + EX28DRAFT_0995 0.44 -0.3 998,910 - EX28DRAFT_0995 0.44 -0.2 998,910 - EX28DRAFT_0995 0.44 -0.6 998,910 - EX28DRAFT_0995 0.44 +0.9 998,990 + EX28DRAFT_0995 0.50 -0.5 998,990 + EX28DRAFT_0995 0.50 -0.4 998,991 - EX28DRAFT_0995 0.50 -0.3 999,028 - EX28DRAFT_0995 0.53 +0.3 999,114 + EX28DRAFT_0995 0.60 -0.2 999,114 + EX28DRAFT_0995 0.60 +0.3 999,141 - EX28DRAFT_0995 0.63 +1.4 999,182 + EX28DRAFT_0995 0.66 +0.5 999,252 + EX28DRAFT_0995 0.72 -0.2 999,252 + EX28DRAFT_0995 0.72 -0.0 999,253 - EX28DRAFT_0995 0.72 -1.8 999,253 - EX28DRAFT_0995 0.72 -0.0 999,254 + EX28DRAFT_0995 0.72 -0.6 999,254 + EX28DRAFT_0995 0.72 -1.5 999,255 - EX28DRAFT_0995 0.72 -0.3 999,317 - EX28DRAFT_0995 0.77 -0.4 999,317 - EX28DRAFT_0995 0.77 -0.8
Or see this region's nucleotide sequence