Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0887 and EX28DRAFT_0888 are separated by 200 nucleotides EX28DRAFT_0888 and EX28DRAFT_0889 are separated by 412 nucleotides EX28DRAFT_0889 and EX28DRAFT_0890 overlap by 4 nucleotides EX28DRAFT_0890 and EX28DRAFT_0891 are separated by 97 nucleotides
EX28DRAFT_0887: EX28DRAFT_0887 - Bacteriophage replication gene A protein (GPA), at 893,869 to 896,226
_0887
EX28DRAFT_0888: EX28DRAFT_0888 - hypothetical protein, at 896,427 to 896,684
_0888
EX28DRAFT_0889: EX28DRAFT_0889 - hypothetical protein, at 897,097 to 898,164
_0889
EX28DRAFT_0890: EX28DRAFT_0890 - hypothetical protein, at 898,161 to 898,856
_0890
EX28DRAFT_0891: EX28DRAFT_0891 - phage portal protein, PBSX family, at 898,954 to 899,979
_0891
Position (kb) 897
898
899 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 896.167 kb on - strand at 896.199 kb on + strand at 896.224 kb on + strand at 896.224 kb on + strand at 896.225 kb on - strand at 896.228 kb on + strand at 896.229 kb on - strand at 896.229 kb on - strand at 896.249 kb on + strand at 896.249 kb on + strand at 896.379 kb on - strand at 896.455 kb on + strand, within EX28DRAFT_0888 at 896.455 kb on + strand, within EX28DRAFT_0888 at 896.476 kb on + strand, within EX28DRAFT_0888 at 896.580 kb on + strand, within EX28DRAFT_0888 at 896.580 kb on + strand, within EX28DRAFT_0888 at 896.788 kb on + strand at 896.788 kb on + strand at 896.845 kb on + strand at 896.848 kb on - strand at 896.848 kb on - strand at 896.859 kb on - strand at 896.900 kb on - strand at 896.908 kb on - strand at 896.920 kb on - strand at 896.939 kb on - strand at 896.944 kb on + strand at 896.975 kb on - strand at 897.005 kb on - strand at 897.012 kb on + strand at 897.483 kb on + strand, within EX28DRAFT_0889 at 897.666 kb on + strand, within EX28DRAFT_0889 at 897.833 kb on + strand, within EX28DRAFT_0889 at 898.035 kb on - strand, within EX28DRAFT_0889 at 898.053 kb on - strand, within EX28DRAFT_0889 at 898.306 kb on + strand, within EX28DRAFT_0890 at 898.710 kb on + strand, within EX28DRAFT_0890 at 898.924 kb on - strand at 898.966 kb on + strand at 898.967 kb on - strand at 898.967 kb on - strand at 898.967 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 896,167 - -0.3 896,199 + -0.5 896,224 + +0.1 896,224 + +0.2 896,225 - -0.6 896,228 + -0.0 896,229 - -1.0 896,229 - -1.0 896,249 + -0.5 896,249 + +0.1 896,379 - -0.4 896,455 + EX28DRAFT_0888 0.11 +0.4 896,455 + EX28DRAFT_0888 0.11 +0.4 896,476 + EX28DRAFT_0888 0.19 -0.1 896,580 + EX28DRAFT_0888 0.59 -1.2 896,580 + EX28DRAFT_0888 0.59 +0.3 896,788 + +0.3 896,788 + -0.1 896,845 + -1.0 896,848 - +0.2 896,848 - -0.5 896,859 - +0.6 896,900 - +0.3 896,908 - -0.3 896,920 - +0.4 896,939 - +0.1 896,944 + -0.5 896,975 - -3.5 897,005 - +1.6 897,012 + +0.9 897,483 + EX28DRAFT_0889 0.36 +0.0 897,666 + EX28DRAFT_0889 0.53 -0.3 897,833 + EX28DRAFT_0889 0.69 -0.4 898,035 - EX28DRAFT_0889 0.88 -0.6 898,053 - EX28DRAFT_0889 0.90 -0.3 898,306 + EX28DRAFT_0890 0.21 -0.2 898,710 + EX28DRAFT_0890 0.79 +0.5 898,924 - +0.2 898,966 + -0.3 898,967 - -0.7 898,967 - -1.0 898,967 - +0.2
Or see this region's nucleotide sequence