Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0865 and EX28DRAFT_0866 are separated by 478 nucleotides EX28DRAFT_0866 and EX28DRAFT_0867 are separated by 137 nucleotides EX28DRAFT_0867 and EX28DRAFT_0868 are separated by 302 nucleotides
EX28DRAFT_0865: EX28DRAFT_0865 - Alcohol dehydrogenase, class IV, at 876,222 to 878,900
_0865
EX28DRAFT_0866: EX28DRAFT_0866 - membrane protein, MarC family, at 879,379 to 880,026
_0866
EX28DRAFT_0867: EX28DRAFT_0867 - hypothetical protein, at 880,164 to 880,495
_0867
EX28DRAFT_0868: EX28DRAFT_0868 - ABC-type oligopeptide transport system, periplasmic component, at 880,798 to 882,429
_0868
Position (kb) 879
880
881 Strain fitness (log2 ratio) -2
-1
0
1 at 878.447 kb on + strand, within EX28DRAFT_0865 at 878.448 kb on - strand, within EX28DRAFT_0865 at 878.448 kb on - strand, within EX28DRAFT_0865 at 878.540 kb on + strand, within EX28DRAFT_0865 at 878.540 kb on + strand, within EX28DRAFT_0865 at 878.559 kb on - strand, within EX28DRAFT_0865 at 878.662 kb on + strand at 878.663 kb on - strand at 878.672 kb on - strand at 878.675 kb on + strand at 878.676 kb on - strand at 878.708 kb on + strand at 878.708 kb on + strand at 878.804 kb on + strand at 878.804 kb on + strand at 878.834 kb on - strand at 878.888 kb on + strand at 878.888 kb on + strand at 878.889 kb on - strand at 878.901 kb on - strand at 878.915 kb on - strand at 878.921 kb on + strand at 878.950 kb on - strand at 878.962 kb on - strand at 879.030 kb on + strand at 879.039 kb on - strand at 879.118 kb on + strand at 879.204 kb on - strand at 879.241 kb on - strand at 879.242 kb on + strand at 879.242 kb on + strand at 879.242 kb on + strand at 879.242 kb on + strand at 879.242 kb on + strand at 879.243 kb on - strand at 879.246 kb on + strand at 879.247 kb on - strand at 879.248 kb on + strand at 879.249 kb on - strand at 879.252 kb on + strand at 879.297 kb on + strand at 879.298 kb on - strand at 879.298 kb on - strand at 879.306 kb on - strand at 879.306 kb on - strand at 879.409 kb on + strand at 879.410 kb on - strand at 879.475 kb on - strand, within EX28DRAFT_0866 at 879.477 kb on + strand, within EX28DRAFT_0866 at 879.487 kb on + strand, within EX28DRAFT_0866 at 879.487 kb on + strand, within EX28DRAFT_0866 at 879.511 kb on - strand, within EX28DRAFT_0866 at 879.511 kb on - strand, within EX28DRAFT_0866 at 879.539 kb on + strand, within EX28DRAFT_0866 at 879.539 kb on + strand, within EX28DRAFT_0866 at 879.540 kb on - strand, within EX28DRAFT_0866 at 879.540 kb on - strand, within EX28DRAFT_0866 at 879.543 kb on + strand, within EX28DRAFT_0866 at 879.543 kb on + strand, within EX28DRAFT_0866 at 879.544 kb on - strand, within EX28DRAFT_0866 at 879.548 kb on + strand, within EX28DRAFT_0866 at 879.549 kb on - strand, within EX28DRAFT_0866 at 879.549 kb on - strand, within EX28DRAFT_0866 at 879.549 kb on - strand, within EX28DRAFT_0866 at 879.730 kb on - strand, within EX28DRAFT_0866 at 879.942 kb on + strand, within EX28DRAFT_0866 at 880.268 kb on + strand, within EX28DRAFT_0867 at 880.302 kb on + strand, within EX28DRAFT_0867 at 880.302 kb on + strand, within EX28DRAFT_0867 at 880.457 kb on - strand, within EX28DRAFT_0867 at 880.490 kb on - strand at 880.542 kb on + strand at 880.570 kb on + strand at 880.677 kb on - strand at 880.730 kb on - strand at 880.730 kb on - strand at 880.774 kb on + strand at 880.774 kb on + strand at 880.774 kb on + strand at 880.776 kb on + strand at 880.789 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 878,447 + EX28DRAFT_0865 0.83 -0.7 878,448 - EX28DRAFT_0865 0.83 +0.3 878,448 - EX28DRAFT_0865 0.83 -0.1 878,540 + EX28DRAFT_0865 0.87 -0.7 878,540 + EX28DRAFT_0865 0.87 +0.3 878,559 - EX28DRAFT_0865 0.87 +0.5 878,662 + -0.1 878,663 - -0.1 878,672 - +0.7 878,675 + -0.4 878,676 - -0.1 878,708 + -2.7 878,708 + -0.2 878,804 + -0.3 878,804 + -0.0 878,834 - +0.4 878,888 + -1.0 878,888 + +0.7 878,889 - +0.5 878,901 - +0.6 878,915 - +0.4 878,921 + -0.1 878,950 - -0.8 878,962 - +0.6 879,030 + -0.0 879,039 - +0.2 879,118 + +0.2 879,204 - -2.2 879,241 - -0.3 879,242 + -0.3 879,242 + +0.2 879,242 + +0.3 879,242 + +1.1 879,242 + -0.4 879,243 - +0.3 879,246 + +0.3 879,247 - +0.5 879,248 + -0.3 879,249 - +0.1 879,252 + +0.5 879,297 + -1.0 879,298 - -1.8 879,298 - -1.8 879,306 - +0.4 879,306 - +0.1 879,409 + +0.1 879,410 - +0.8 879,475 - EX28DRAFT_0866 0.15 +0.2 879,477 + EX28DRAFT_0866 0.15 -0.3 879,487 + EX28DRAFT_0866 0.17 -0.3 879,487 + EX28DRAFT_0866 0.17 -0.3 879,511 - EX28DRAFT_0866 0.20 +0.1 879,511 - EX28DRAFT_0866 0.20 -1.8 879,539 + EX28DRAFT_0866 0.25 +0.3 879,539 + EX28DRAFT_0866 0.25 -0.4 879,540 - EX28DRAFT_0866 0.25 -0.1 879,540 - EX28DRAFT_0866 0.25 -1.4 879,543 + EX28DRAFT_0866 0.25 -0.2 879,543 + EX28DRAFT_0866 0.25 +0.0 879,544 - EX28DRAFT_0866 0.25 -0.0 879,548 + EX28DRAFT_0866 0.26 -0.3 879,549 - EX28DRAFT_0866 0.26 -0.0 879,549 - EX28DRAFT_0866 0.26 +0.7 879,549 - EX28DRAFT_0866 0.26 -0.2 879,730 - EX28DRAFT_0866 0.54 +0.3 879,942 + EX28DRAFT_0866 0.87 -0.0 880,268 + EX28DRAFT_0867 0.31 +0.2 880,302 + EX28DRAFT_0867 0.42 -0.7 880,302 + EX28DRAFT_0867 0.42 -0.9 880,457 - EX28DRAFT_0867 0.88 +0.1 880,490 - -1.4 880,542 + -0.0 880,570 + -0.1 880,677 - +0.5 880,730 - +0.1 880,730 - +0.0 880,774 + -0.8 880,774 + +0.1 880,774 + -0.3 880,776 + +0.3 880,789 - -0.4
Or see this region's nucleotide sequence