Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0773

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0771 and EX28DRAFT_0772 are separated by 208 nucleotidesEX28DRAFT_0772 and EX28DRAFT_0773 are separated by 112 nucleotidesEX28DRAFT_0773 and EX28DRAFT_0774 are separated by 61 nucleotides EX28DRAFT_0771: EX28DRAFT_0771 - Predicted glycosyltransferase, at 768,567 to 769,298 _0771 EX28DRAFT_0772: EX28DRAFT_0772 - Predicted membrane protein, at 769,507 to 769,761 _0772 EX28DRAFT_0773: EX28DRAFT_0773 - TonB-dependent siderophore receptor, at 769,874 to 771,976 _0773 EX28DRAFT_0774: EX28DRAFT_0774 - Neutral trehalase, at 772,038 to 773,723 _0774 Position (kb) 769 770 771 772Strain fitness (log2 ratio) -2 -1 0 1 2at 768.952 kb on + strand, within EX28DRAFT_0771at 768.953 kb on - strand, within EX28DRAFT_0771at 769.053 kb on + strand, within EX28DRAFT_0771at 769.120 kb on + strand, within EX28DRAFT_0771at 769.248 kb on + strandat 769.248 kb on + strandat 769.248 kb on + strandat 769.249 kb on - strandat 769.251 kb on + strandat 769.251 kb on + strandat 769.316 kb on + strandat 769.316 kb on + strandat 769.316 kb on + strandat 769.317 kb on - strandat 769.394 kb on + strandat 769.448 kb on + strandat 769.448 kb on + strandat 769.448 kb on + strandat 769.449 kb on - strandat 769.513 kb on - strandat 769.527 kb on + strandat 769.539 kb on + strand, within EX28DRAFT_0772at 769.674 kb on - strand, within EX28DRAFT_0772at 769.674 kb on - strand, within EX28DRAFT_0772at 769.674 kb on - strand, within EX28DRAFT_0772at 769.737 kb on - strandat 769.759 kb on + strandat 769.760 kb on - strandat 769.807 kb on + strandat 770.158 kb on + strand, within EX28DRAFT_0773at 770.159 kb on - strand, within EX28DRAFT_0773at 770.159 kb on - strand, within EX28DRAFT_0773at 770.179 kb on + strand, within EX28DRAFT_0773at 770.234 kb on + strand, within EX28DRAFT_0773at 770.234 kb on + strand, within EX28DRAFT_0773at 770.235 kb on - strand, within EX28DRAFT_0773at 770.236 kb on + strand, within EX28DRAFT_0773at 770.293 kb on + strand, within EX28DRAFT_0773at 770.353 kb on + strand, within EX28DRAFT_0773at 770.353 kb on + strand, within EX28DRAFT_0773at 770.362 kb on + strand, within EX28DRAFT_0773at 770.423 kb on - strand, within EX28DRAFT_0773at 770.474 kb on + strand, within EX28DRAFT_0773at 770.685 kb on - strand, within EX28DRAFT_0773at 770.711 kb on - strand, within EX28DRAFT_0773at 770.822 kb on + strand, within EX28DRAFT_0773at 770.870 kb on + strand, within EX28DRAFT_0773at 770.890 kb on + strand, within EX28DRAFT_0773at 770.891 kb on - strand, within EX28DRAFT_0773at 770.891 kb on - strand, within EX28DRAFT_0773at 770.891 kb on - strand, within EX28DRAFT_0773at 771.048 kb on - strand, within EX28DRAFT_0773at 771.125 kb on + strand, within EX28DRAFT_0773at 771.126 kb on - strand, within EX28DRAFT_0773at 771.126 kb on - strand, within EX28DRAFT_0773at 771.126 kb on - strand, within EX28DRAFT_0773at 771.142 kb on - strand, within EX28DRAFT_0773at 771.209 kb on + strand, within EX28DRAFT_0773at 771.227 kb on - strand, within EX28DRAFT_0773at 771.407 kb on + strand, within EX28DRAFT_0773at 771.500 kb on + strand, within EX28DRAFT_0773at 771.587 kb on + strand, within EX28DRAFT_0773at 771.587 kb on + strand, within EX28DRAFT_0773at 771.588 kb on - strand, within EX28DRAFT_0773at 771.588 kb on - strand, within EX28DRAFT_0773at 771.588 kb on - strand, within EX28DRAFT_0773at 771.589 kb on + strand, within EX28DRAFT_0773at 771.589 kb on + strand, within EX28DRAFT_0773at 771.589 kb on + strand, within EX28DRAFT_0773at 771.590 kb on - strand, within EX28DRAFT_0773at 771.590 kb on - strand, within EX28DRAFT_0773at 771.590 kb on - strand, within EX28DRAFT_0773at 771.590 kb on - strand, within EX28DRAFT_0773at 771.593 kb on + strand, within EX28DRAFT_0773at 771.593 kb on + strand, within EX28DRAFT_0773at 771.594 kb on - strand, within EX28DRAFT_0773at 771.594 kb on - strand, within EX28DRAFT_0773at 771.626 kb on + strand, within EX28DRAFT_0773at 771.626 kb on + strand, within EX28DRAFT_0773at 771.626 kb on + strand, within EX28DRAFT_0773at 771.627 kb on - strand, within EX28DRAFT_0773at 771.683 kb on + strand, within EX28DRAFT_0773at 771.694 kb on + strand, within EX28DRAFT_0773at 771.800 kb on + strandat 771.890 kb on - strandat 771.909 kb on - strandat 771.948 kb on - strandat 771.967 kb on + strandat 771.974 kb on + strandat 771.975 kb on - strandat 772.040 kb on - strandat 772.231 kb on + strand, within EX28DRAFT_0774at 772.262 kb on - strand, within EX28DRAFT_0774at 772.262 kb on - strand, within EX28DRAFT_0774at 772.262 kb on - strand, within EX28DRAFT_0774at 772.265 kb on + strand, within EX28DRAFT_0774at 772.265 kb on + strand, within EX28DRAFT_0774at 772.265 kb on + strand, within EX28DRAFT_0774at 772.495 kb on + strand, within EX28DRAFT_0774at 772.533 kb on + strand, within EX28DRAFT_0774at 772.555 kb on + strand, within EX28DRAFT_0774at 772.556 kb on - strand, within EX28DRAFT_0774at 772.578 kb on - strand, within EX28DRAFT_0774at 772.784 kb on + strand, within EX28DRAFT_0774at 772.785 kb on - strand, within EX28DRAFT_0774at 772.785 kb on - strand, within EX28DRAFT_0774at 772.853 kb on + strand, within EX28DRAFT_0774at 772.854 kb on - strand, within EX28DRAFT_0774

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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768,952 + EX28DRAFT_0771 0.53 +0.0
768,953 - EX28DRAFT_0771 0.53 -0.7
769,053 + EX28DRAFT_0771 0.66 -0.8
769,120 + EX28DRAFT_0771 0.76 -1.4
769,248 + -1.9
769,248 + +0.4
769,248 + +0.0
769,249 - +0.1
769,251 + +1.0
769,251 + +0.9
769,316 + -0.7
769,316 + -0.1
769,316 + +0.4
769,317 - +0.0
769,394 + -0.3
769,448 + +0.8
769,448 + +0.1
769,448 + -0.4
769,449 - -1.7
769,513 - -0.1
769,527 + +0.7
769,539 + EX28DRAFT_0772 0.13 -0.1
769,674 - EX28DRAFT_0772 0.65 -0.4
769,674 - EX28DRAFT_0772 0.65 +1.8
769,674 - EX28DRAFT_0772 0.65 -0.8
769,737 - -0.4
769,759 + -0.3
769,760 - -0.0
769,807 + -1.8
770,158 + EX28DRAFT_0773 0.14 -0.7
770,159 - EX28DRAFT_0773 0.14 -1.2
770,159 - EX28DRAFT_0773 0.14 -0.1
770,179 + EX28DRAFT_0773 0.15 +0.0
770,234 + EX28DRAFT_0773 0.17 +0.1
770,234 + EX28DRAFT_0773 0.17 +0.2
770,235 - EX28DRAFT_0773 0.17 +0.1
770,236 + EX28DRAFT_0773 0.17 +0.4
770,293 + EX28DRAFT_0773 0.20 +0.1
770,353 + EX28DRAFT_0773 0.23 -0.0
770,353 + EX28DRAFT_0773 0.23 -0.4
770,362 + EX28DRAFT_0773 0.23 -0.1
770,423 - EX28DRAFT_0773 0.26 -0.5
770,474 + EX28DRAFT_0773 0.29 -0.3
770,685 - EX28DRAFT_0773 0.39 -0.8
770,711 - EX28DRAFT_0773 0.40 +0.5
770,822 + EX28DRAFT_0773 0.45 -0.7
770,870 + EX28DRAFT_0773 0.47 -1.0
770,890 + EX28DRAFT_0773 0.48 +1.3
770,891 - EX28DRAFT_0773 0.48 +0.2
770,891 - EX28DRAFT_0773 0.48 +0.2
770,891 - EX28DRAFT_0773 0.48 -0.8
771,048 - EX28DRAFT_0773 0.56 -0.4
771,125 + EX28DRAFT_0773 0.59 +0.5
771,126 - EX28DRAFT_0773 0.60 +1.3
771,126 - EX28DRAFT_0773 0.60 -0.6
771,126 - EX28DRAFT_0773 0.60 +0.5
771,142 - EX28DRAFT_0773 0.60 -0.1
771,209 + EX28DRAFT_0773 0.63 +0.6
771,227 - EX28DRAFT_0773 0.64 +0.0
771,407 + EX28DRAFT_0773 0.73 -0.9
771,500 + EX28DRAFT_0773 0.77 +0.1
771,587 + EX28DRAFT_0773 0.81 +0.3
771,587 + EX28DRAFT_0773 0.81 -0.1
771,588 - EX28DRAFT_0773 0.82 -1.1
771,588 - EX28DRAFT_0773 0.82 -0.1
771,588 - EX28DRAFT_0773 0.82 -1.1
771,589 + EX28DRAFT_0773 0.82 -0.5
771,589 + EX28DRAFT_0773 0.82 -1.3
771,589 + EX28DRAFT_0773 0.82 +0.5
771,590 - EX28DRAFT_0773 0.82 -0.7
771,590 - EX28DRAFT_0773 0.82 -0.2
771,590 - EX28DRAFT_0773 0.82 -0.4
771,590 - EX28DRAFT_0773 0.82 -0.3
771,593 + EX28DRAFT_0773 0.82 +0.1
771,593 + EX28DRAFT_0773 0.82 -0.5
771,594 - EX28DRAFT_0773 0.82 -1.2
771,594 - EX28DRAFT_0773 0.82 -0.4
771,626 + EX28DRAFT_0773 0.83 +0.1
771,626 + EX28DRAFT_0773 0.83 -0.8
771,626 + EX28DRAFT_0773 0.83 -0.1
771,627 - EX28DRAFT_0773 0.83 +0.2
771,683 + EX28DRAFT_0773 0.86 -0.7
771,694 + EX28DRAFT_0773 0.87 -0.4
771,800 + +0.5
771,890 - -0.1
771,909 - -0.5
771,948 - -0.1
771,967 + -0.4
771,974 + +0.6
771,975 - -1.0
772,040 - +0.4
772,231 + EX28DRAFT_0774 0.11 -0.3
772,262 - EX28DRAFT_0774 0.13 -0.4
772,262 - EX28DRAFT_0774 0.13 +1.5
772,262 - EX28DRAFT_0774 0.13 -1.2
772,265 + EX28DRAFT_0774 0.13 +0.2
772,265 + EX28DRAFT_0774 0.13 +0.8
772,265 + EX28DRAFT_0774 0.13 -0.8
772,495 + EX28DRAFT_0774 0.27 +0.6
772,533 + EX28DRAFT_0774 0.29 +0.7
772,555 + EX28DRAFT_0774 0.31 +0.1
772,556 - EX28DRAFT_0774 0.31 -0.6
772,578 - EX28DRAFT_0774 0.32 +0.2
772,784 + EX28DRAFT_0774 0.44 -2.6
772,785 - EX28DRAFT_0774 0.44 -0.7
772,785 - EX28DRAFT_0774 0.44 -0.3
772,853 + EX28DRAFT_0774 0.48 -0.0
772,854 - EX28DRAFT_0774 0.48 +0.0

Or see this region's nucleotide sequence