Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0665 and EX28DRAFT_0666 are separated by 57 nucleotides EX28DRAFT_0666 and EX28DRAFT_0667 are separated by 16 nucleotides EX28DRAFT_0667 and EX28DRAFT_0668 overlap by 25 nucleotides
EX28DRAFT_0665: EX28DRAFT_0665 - Uncharacterized secreted protein, at 660,384 to 660,956
_0665
EX28DRAFT_0666: EX28DRAFT_0666 - Uncharacterized secreted protein, at 661,014 to 661,517
_0666
EX28DRAFT_0667: EX28DRAFT_0667 - P pilus assembly protein, chaperone PapD, at 661,534 to 662,289
_0667
EX28DRAFT_0668: EX28DRAFT_0668 - P pilus assembly protein, porin PapC, at 662,265 to 664,649
_0668
Position (kb) 661
662 Strain fitness (log2 ratio) -2
-1
0
1
2 at 660.149 kb on - strand at 660.230 kb on + strand at 660.230 kb on + strand at 660.230 kb on + strand at 660.230 kb on + strand at 660.230 kb on + strand at 660.231 kb on - strand at 660.278 kb on + strand at 660.382 kb on - strand at 660.540 kb on - strand, within EX28DRAFT_0665 at 660.591 kb on - strand, within EX28DRAFT_0665 at 660.591 kb on - strand, within EX28DRAFT_0665 at 660.591 kb on - strand, within EX28DRAFT_0665 at 660.654 kb on + strand, within EX28DRAFT_0665 at 660.654 kb on + strand, within EX28DRAFT_0665 at 660.654 kb on + strand, within EX28DRAFT_0665 at 660.655 kb on - strand, within EX28DRAFT_0665 at 660.655 kb on - strand, within EX28DRAFT_0665 at 660.655 kb on - strand, within EX28DRAFT_0665 at 660.655 kb on - strand, within EX28DRAFT_0665 at 660.656 kb on + strand, within EX28DRAFT_0665 at 660.657 kb on - strand, within EX28DRAFT_0665 at 660.658 kb on - strand, within EX28DRAFT_0665 at 660.781 kb on - strand, within EX28DRAFT_0665 at 660.861 kb on + strand, within EX28DRAFT_0665 at 660.921 kb on + strand at 660.952 kb on - strand at 660.952 kb on - strand at 660.955 kb on - strand at 661.268 kb on + strand, within EX28DRAFT_0666 at 661.408 kb on - strand, within EX28DRAFT_0666 at 661.409 kb on + strand, within EX28DRAFT_0666 at 661.515 kb on + strand at 661.519 kb on - strand at 661.754 kb on - strand, within EX28DRAFT_0667 at 661.755 kb on + strand, within EX28DRAFT_0667 at 661.756 kb on - strand, within EX28DRAFT_0667 at 661.878 kb on + strand, within EX28DRAFT_0667 at 661.991 kb on + strand, within EX28DRAFT_0667 at 661.992 kb on - strand, within EX28DRAFT_0667 at 662.248 kb on - strand at 662.305 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 660,149 - +0.5 660,230 + -0.0 660,230 + +0.2 660,230 + -0.6 660,230 + +0.1 660,230 + -0.4 660,231 - -0.3 660,278 + -1.7 660,382 - -0.3 660,540 - EX28DRAFT_0665 0.27 +0.2 660,591 - EX28DRAFT_0665 0.36 +0.4 660,591 - EX28DRAFT_0665 0.36 -0.3 660,591 - EX28DRAFT_0665 0.36 -2.0 660,654 + EX28DRAFT_0665 0.47 -0.1 660,654 + EX28DRAFT_0665 0.47 +1.0 660,654 + EX28DRAFT_0665 0.47 +0.2 660,655 - EX28DRAFT_0665 0.47 +1.3 660,655 - EX28DRAFT_0665 0.47 +0.2 660,655 - EX28DRAFT_0665 0.47 +0.1 660,655 - EX28DRAFT_0665 0.47 +0.7 660,656 + EX28DRAFT_0665 0.47 -0.4 660,657 - EX28DRAFT_0665 0.48 -0.2 660,658 - EX28DRAFT_0665 0.48 +1.3 660,781 - EX28DRAFT_0665 0.69 +0.4 660,861 + EX28DRAFT_0665 0.83 -0.5 660,921 + +1.2 660,952 - +0.1 660,952 - +2.2 660,955 - +0.3 661,268 + EX28DRAFT_0666 0.50 +0.3 661,408 - EX28DRAFT_0666 0.78 -1.6 661,409 + EX28DRAFT_0666 0.78 -0.4 661,515 + +0.4 661,519 - -0.3 661,754 - EX28DRAFT_0667 0.29 -0.5 661,755 + EX28DRAFT_0667 0.29 -1.1 661,756 - EX28DRAFT_0667 0.29 -0.3 661,878 + EX28DRAFT_0667 0.46 +0.1 661,991 + EX28DRAFT_0667 0.60 -0.4 661,992 - EX28DRAFT_0667 0.61 +0.9 662,248 - +0.8 662,305 + +0.1
Or see this region's nucleotide sequence