Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0554 and EX28DRAFT_0555 are separated by 18 nucleotides EX28DRAFT_0555 and EX28DRAFT_0556 are separated by 73 nucleotides
EX28DRAFT_0554: EX28DRAFT_0554 - Xaa-Pro aminopeptidase, at 546,518 to 548,284
_0554
EX28DRAFT_0555: EX28DRAFT_0555 - AMP nucleosidase, at 548,303 to 549,757
_0555
EX28DRAFT_0556: EX28DRAFT_0556 - metabolite-proton symporter, at 549,831 to 551,147
_0556
Position (kb) 548
549
550 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 547.540 kb on + strand, within EX28DRAFT_0554 at 547.547 kb on - strand, within EX28DRAFT_0554 at 547.547 kb on - strand, within EX28DRAFT_0554 at 547.603 kb on + strand, within EX28DRAFT_0554 at 547.603 kb on + strand, within EX28DRAFT_0554 at 547.741 kb on - strand, within EX28DRAFT_0554 at 548.184 kb on + strand at 548.389 kb on + strand at 548.424 kb on + strand at 548.453 kb on - strand, within EX28DRAFT_0555 at 548.703 kb on + strand, within EX28DRAFT_0555 at 548.805 kb on + strand, within EX28DRAFT_0555 at 549.075 kb on + strand, within EX28DRAFT_0555 at 549.142 kb on - strand, within EX28DRAFT_0555 at 549.270 kb on + strand, within EX28DRAFT_0555 at 549.384 kb on + strand, within EX28DRAFT_0555 at 549.385 kb on - strand, within EX28DRAFT_0555 at 549.653 kb on - strand at 549.748 kb on + strand at 549.751 kb on + strand at 549.752 kb on - strand at 549.800 kb on + strand at 549.800 kb on + strand at 549.800 kb on + strand at 549.800 kb on + strand at 549.800 kb on + strand at 549.801 kb on - strand at 549.801 kb on - strand at 550.059 kb on + strand, within EX28DRAFT_0556 at 550.074 kb on - strand, within EX28DRAFT_0556 at 550.146 kb on - strand, within EX28DRAFT_0556 at 550.193 kb on - strand, within EX28DRAFT_0556 at 550.321 kb on + strand, within EX28DRAFT_0556 at 550.322 kb on - strand, within EX28DRAFT_0556 at 550.322 kb on - strand, within EX28DRAFT_0556 at 550.322 kb on - strand, within EX28DRAFT_0556 at 550.322 kb on - strand, within EX28DRAFT_0556 at 550.346 kb on + strand, within EX28DRAFT_0556 at 550.348 kb on + strand, within EX28DRAFT_0556 at 550.348 kb on + strand, within EX28DRAFT_0556 at 550.348 kb on + strand, within EX28DRAFT_0556 at 550.348 kb on + strand, within EX28DRAFT_0556 at 550.348 kb on + strand, within EX28DRAFT_0556 at 550.587 kb on - strand, within EX28DRAFT_0556 at 550.596 kb on - strand, within EX28DRAFT_0556 at 550.596 kb on - strand, within EX28DRAFT_0556 at 550.599 kb on + strand, within EX28DRAFT_0556 at 550.600 kb on - strand, within EX28DRAFT_0556 at 550.600 kb on - strand, within EX28DRAFT_0556 at 550.663 kb on + strand, within EX28DRAFT_0556 at 550.705 kb on - strand, within EX28DRAFT_0556
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 547,540 + EX28DRAFT_0554 0.58 +0.0 547,547 - EX28DRAFT_0554 0.58 +0.2 547,547 - EX28DRAFT_0554 0.58 -0.0 547,603 + EX28DRAFT_0554 0.61 +0.4 547,603 + EX28DRAFT_0554 0.61 -0.0 547,741 - EX28DRAFT_0554 0.69 -0.0 548,184 + +0.6 548,389 + -0.3 548,424 + -0.5 548,453 - EX28DRAFT_0555 0.10 -0.3 548,703 + EX28DRAFT_0555 0.27 -1.1 548,805 + EX28DRAFT_0555 0.35 -0.0 549,075 + EX28DRAFT_0555 0.53 -0.4 549,142 - EX28DRAFT_0555 0.58 -3.4 549,270 + EX28DRAFT_0555 0.66 -1.0 549,384 + EX28DRAFT_0555 0.74 -1.9 549,385 - EX28DRAFT_0555 0.74 -0.6 549,653 - -0.6 549,748 + -0.5 549,751 + -0.8 549,752 - -0.6 549,800 + +0.1 549,800 + -0.7 549,800 + -0.9 549,800 + +0.1 549,800 + +0.4 549,801 - -1.0 549,801 - +0.3 550,059 + EX28DRAFT_0556 0.17 +1.3 550,074 - EX28DRAFT_0556 0.18 +0.0 550,146 - EX28DRAFT_0556 0.24 -0.2 550,193 - EX28DRAFT_0556 0.27 +1.0 550,321 + EX28DRAFT_0556 0.37 +0.3 550,322 - EX28DRAFT_0556 0.37 +0.1 550,322 - EX28DRAFT_0556 0.37 -0.0 550,322 - EX28DRAFT_0556 0.37 +0.2 550,322 - EX28DRAFT_0556 0.37 -0.1 550,346 + EX28DRAFT_0556 0.39 -2.0 550,348 + EX28DRAFT_0556 0.39 -0.4 550,348 + EX28DRAFT_0556 0.39 +0.5 550,348 + EX28DRAFT_0556 0.39 +0.3 550,348 + EX28DRAFT_0556 0.39 -0.4 550,348 + EX28DRAFT_0556 0.39 -0.1 550,587 - EX28DRAFT_0556 0.57 +0.2 550,596 - EX28DRAFT_0556 0.58 +0.6 550,596 - EX28DRAFT_0556 0.58 -0.6 550,599 + EX28DRAFT_0556 0.58 +0.2 550,600 - EX28DRAFT_0556 0.58 -0.7 550,600 - EX28DRAFT_0556 0.58 +0.8 550,663 + EX28DRAFT_0556 0.63 -0.7 550,705 - EX28DRAFT_0556 0.66 -2.0
Or see this region's nucleotide sequence