Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0544

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0543 and EX28DRAFT_0544 are separated by 271 nucleotidesEX28DRAFT_0544 and EX28DRAFT_0545 are separated by 122 nucleotides EX28DRAFT_0543: EX28DRAFT_0543 - Transcriptional regulator, at 536,348 to 537,277 _0543 EX28DRAFT_0544: EX28DRAFT_0544 - Amino acid transporters, at 537,549 to 538,907 _0544 EX28DRAFT_0545: EX28DRAFT_0545 - Exodeoxyribonuclease I subunit C (EC 3.1.11.1), at 539,030 to 540,454 _0545 Position (kb) 537 538 539Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 536.650 kb on + strand, within EX28DRAFT_0543at 536.651 kb on - strand, within EX28DRAFT_0543at 536.693 kb on + strand, within EX28DRAFT_0543at 536.694 kb on - strand, within EX28DRAFT_0543at 536.694 kb on - strand, within EX28DRAFT_0543at 536.856 kb on + strand, within EX28DRAFT_0543at 536.856 kb on + strand, within EX28DRAFT_0543at 536.857 kb on - strand, within EX28DRAFT_0543at 536.938 kb on - strand, within EX28DRAFT_0543at 537.021 kb on - strand, within EX28DRAFT_0543at 537.022 kb on + strand, within EX28DRAFT_0543at 537.022 kb on + strand, within EX28DRAFT_0543at 537.023 kb on - strand, within EX28DRAFT_0543at 537.045 kb on + strand, within EX28DRAFT_0543at 537.070 kb on - strand, within EX28DRAFT_0543at 537.096 kb on + strand, within EX28DRAFT_0543at 537.096 kb on + strand, within EX28DRAFT_0543at 537.096 kb on + strand, within EX28DRAFT_0543at 537.097 kb on - strand, within EX28DRAFT_0543at 537.126 kb on + strand, within EX28DRAFT_0543at 537.223 kb on + strandat 537.223 kb on + strandat 537.243 kb on - strandat 537.310 kb on - strandat 537.375 kb on + strandat 537.376 kb on - strandat 537.376 kb on - strandat 537.419 kb on - strandat 537.450 kb on - strandat 537.453 kb on + strandat 537.453 kb on + strandat 537.453 kb on + strandat 537.453 kb on + strandat 537.453 kb on + strandat 537.454 kb on - strandat 537.457 kb on + strandat 537.458 kb on - strandat 537.515 kb on + strandat 537.545 kb on - strandat 537.548 kb on + strandat 537.549 kb on - strandat 537.549 kb on - strandat 537.549 kb on - strandat 537.549 kb on - strandat 537.593 kb on + strandat 537.594 kb on - strandat 537.602 kb on + strandat 537.620 kb on + strandat 537.636 kb on + strandat 537.637 kb on - strandat 537.637 kb on - strandat 537.637 kb on - strandat 537.638 kb on + strandat 537.795 kb on + strand, within EX28DRAFT_0544at 537.801 kb on + strand, within EX28DRAFT_0544at 537.802 kb on - strand, within EX28DRAFT_0544at 537.837 kb on - strand, within EX28DRAFT_0544at 537.968 kb on + strand, within EX28DRAFT_0544at 537.995 kb on + strand, within EX28DRAFT_0544at 537.995 kb on + strand, within EX28DRAFT_0544at 538.013 kb on + strand, within EX28DRAFT_0544at 538.295 kb on + strand, within EX28DRAFT_0544at 538.308 kb on + strand, within EX28DRAFT_0544at 538.383 kb on + strand, within EX28DRAFT_0544at 538.383 kb on + strand, within EX28DRAFT_0544at 538.383 kb on + strand, within EX28DRAFT_0544at 538.384 kb on - strand, within EX28DRAFT_0544at 538.438 kb on + strand, within EX28DRAFT_0544at 538.485 kb on + strand, within EX28DRAFT_0544at 538.738 kb on - strand, within EX28DRAFT_0544at 538.845 kb on + strandat 538.846 kb on - strandat 538.891 kb on - strandat 538.943 kb on + strandat 538.944 kb on - strandat 538.944 kb on - strandat 538.944 kb on - strandat 538.944 kb on - strandat 538.944 kb on - strandat 538.947 kb on + strandat 538.948 kb on - strandat 539.019 kb on - strandat 539.019 kb on - strandat 539.019 kb on - strandat 539.036 kb on + strandat 539.036 kb on + strandat 539.036 kb on + strandat 539.049 kb on + strandat 539.130 kb on + strandat 539.135 kb on - strandat 539.286 kb on - strand, within EX28DRAFT_0545at 539.546 kb on - strand, within EX28DRAFT_0545at 539.551 kb on + strand, within EX28DRAFT_0545at 539.731 kb on + strand, within EX28DRAFT_0545

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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536,650 + EX28DRAFT_0543 0.32 +0.3
536,651 - EX28DRAFT_0543 0.33 +0.1
536,693 + EX28DRAFT_0543 0.37 +0.1
536,694 - EX28DRAFT_0543 0.37 -1.6
536,694 - EX28DRAFT_0543 0.37 +0.3
536,856 + EX28DRAFT_0543 0.55 -0.2
536,856 + EX28DRAFT_0543 0.55 -1.8
536,857 - EX28DRAFT_0543 0.55 +0.5
536,938 - EX28DRAFT_0543 0.63 -0.5
537,021 - EX28DRAFT_0543 0.72 +0.2
537,022 + EX28DRAFT_0543 0.72 +0.7
537,022 + EX28DRAFT_0543 0.72 -0.1
537,023 - EX28DRAFT_0543 0.73 -0.2
537,045 + EX28DRAFT_0543 0.75 -0.8
537,070 - EX28DRAFT_0543 0.78 +0.1
537,096 + EX28DRAFT_0543 0.80 -0.2
537,096 + EX28DRAFT_0543 0.80 +0.6
537,096 + EX28DRAFT_0543 0.80 +0.3
537,097 - EX28DRAFT_0543 0.81 -0.1
537,126 + EX28DRAFT_0543 0.84 -0.1
537,223 + +0.4
537,223 + -0.2
537,243 - -0.1
537,310 - -0.0
537,375 + +0.4
537,376 - +0.5
537,376 - -0.5
537,419 - -0.7
537,450 - +1.3
537,453 + +0.4
537,453 + +0.4
537,453 + +0.7
537,453 + +0.5
537,453 + -0.8
537,454 - +0.2
537,457 + +0.8
537,458 - +0.2
537,515 + -0.2
537,545 - +0.7
537,548 + +0.2
537,549 - +2.0
537,549 - -0.3
537,549 - +0.8
537,549 - +0.7
537,593 + +0.6
537,594 - +0.9
537,602 + +1.0
537,620 + +0.4
537,636 + +0.5
537,637 - +0.9
537,637 - +0.9
537,637 - -0.6
537,638 + +0.8
537,795 + EX28DRAFT_0544 0.18 +0.2
537,801 + EX28DRAFT_0544 0.19 +0.2
537,802 - EX28DRAFT_0544 0.19 -0.1
537,837 - EX28DRAFT_0544 0.21 +0.7
537,968 + EX28DRAFT_0544 0.31 +1.1
537,995 + EX28DRAFT_0544 0.33 +0.5
537,995 + EX28DRAFT_0544 0.33 +1.7
538,013 + EX28DRAFT_0544 0.34 +0.9
538,295 + EX28DRAFT_0544 0.55 +0.3
538,308 + EX28DRAFT_0544 0.56 +1.2
538,383 + EX28DRAFT_0544 0.61 +0.6
538,383 + EX28DRAFT_0544 0.61 +0.5
538,383 + EX28DRAFT_0544 0.61 +0.1
538,384 - EX28DRAFT_0544 0.61 +0.2
538,438 + EX28DRAFT_0544 0.65 +0.7
538,485 + EX28DRAFT_0544 0.69 +0.6
538,738 - EX28DRAFT_0544 0.87 +0.9
538,845 + +0.6
538,846 - +1.3
538,891 - -0.2
538,943 + +0.1
538,944 - +0.4
538,944 - -0.4
538,944 - +0.5
538,944 - -0.3
538,944 - -3.2
538,947 + -0.1
538,948 - +0.4
539,019 - -0.1
539,019 - +1.0
539,019 - +0.1
539,036 + -0.6
539,036 + -0.5
539,036 + +0.3
539,049 + -1.5
539,130 + -1.2
539,135 - -1.5
539,286 - EX28DRAFT_0545 0.18 -0.7
539,546 - EX28DRAFT_0545 0.36 -0.9
539,551 + EX28DRAFT_0545 0.37 -1.0
539,731 + EX28DRAFT_0545 0.49 -1.1

Or see this region's nucleotide sequence