Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0470 and EX28DRAFT_0471 overlap by 27 nucleotides EX28DRAFT_0471 and EX28DRAFT_0472 overlap by 4 nucleotides EX28DRAFT_0472 and EX28DRAFT_0473 overlap by 4 nucleotides
EX28DRAFT_0470: EX28DRAFT_0470 - Transcriptional regulators, at 453,264 to 454,010
_0470
EX28DRAFT_0471: EX28DRAFT_0471 - Sugar kinases, ribokinase family, at 453,984 to 454,937
_0471
EX28DRAFT_0472: EX28DRAFT_0472 - ADP-ribosylglycohydrolase, at 454,934 to 455,938
_0472
EX28DRAFT_0473: EX28DRAFT_0473 - nucleoside transporter, at 455,935 to 457,212
_0473
Position (kb) 454
455
456 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 453.969 kb on + strand at 453.970 kb on - strand at 453.986 kb on - strand at 453.988 kb on - strand at 454.008 kb on + strand at 454.008 kb on + strand at 454.501 kb on - strand, within EX28DRAFT_0471 at 454.505 kb on - strand, within EX28DRAFT_0471 at 454.692 kb on - strand, within EX28DRAFT_0471 at 454.692 kb on - strand, within EX28DRAFT_0471 at 454.790 kb on + strand, within EX28DRAFT_0471 at 454.937 kb on + strand at 454.938 kb on - strand at 455.220 kb on + strand, within EX28DRAFT_0472 at 455.284 kb on + strand, within EX28DRAFT_0472 at 455.284 kb on + strand, within EX28DRAFT_0472 at 455.674 kb on + strand, within EX28DRAFT_0472 at 455.675 kb on - strand, within EX28DRAFT_0472 at 455.675 kb on - strand, within EX28DRAFT_0472 at 455.794 kb on + strand, within EX28DRAFT_0472 at 455.795 kb on - strand, within EX28DRAFT_0472 at 455.795 kb on - strand, within EX28DRAFT_0472 at 455.814 kb on - strand, within EX28DRAFT_0472 at 455.940 kb on + strand at 455.940 kb on + strand at 455.940 kb on + strand at 456.024 kb on + strand at 456.025 kb on - strand at 456.114 kb on - strand, within EX28DRAFT_0473 at 456.189 kb on + strand, within EX28DRAFT_0473 at 456.242 kb on + strand, within EX28DRAFT_0473 at 456.243 kb on - strand, within EX28DRAFT_0473 at 456.247 kb on - strand, within EX28DRAFT_0473 at 456.247 kb on - strand, within EX28DRAFT_0473 at 456.248 kb on + strand, within EX28DRAFT_0473 at 456.248 kb on + strand, within EX28DRAFT_0473 at 456.249 kb on - strand, within EX28DRAFT_0473 at 456.260 kb on + strand, within EX28DRAFT_0473 at 456.261 kb on - strand, within EX28DRAFT_0473 at 456.263 kb on + strand, within EX28DRAFT_0473 at 456.264 kb on - strand, within EX28DRAFT_0473 at 456.273 kb on - strand, within EX28DRAFT_0473 at 456.314 kb on + strand, within EX28DRAFT_0473 at 456.389 kb on - strand, within EX28DRAFT_0473 at 456.399 kb on + strand, within EX28DRAFT_0473 at 456.418 kb on - strand, within EX28DRAFT_0473 at 456.439 kb on - strand, within EX28DRAFT_0473 at 456.527 kb on + strand, within EX28DRAFT_0473 at 456.527 kb on + strand, within EX28DRAFT_0473 at 456.527 kb on + strand, within EX28DRAFT_0473 at 456.528 kb on - strand, within EX28DRAFT_0473 at 456.528 kb on - strand, within EX28DRAFT_0473 at 456.528 kb on - strand, within EX28DRAFT_0473 at 456.531 kb on - strand, within EX28DRAFT_0473 at 456.531 kb on - strand, within EX28DRAFT_0473 at 456.663 kb on + strand, within EX28DRAFT_0473 at 456.663 kb on + strand, within EX28DRAFT_0473 at 456.898 kb on - strand, within EX28DRAFT_0473 at 456.899 kb on + strand, within EX28DRAFT_0473 at 456.899 kb on + strand, within EX28DRAFT_0473 at 456.899 kb on + strand, within EX28DRAFT_0473 at 456.899 kb on + strand, within EX28DRAFT_0473 at 456.900 kb on - strand, within EX28DRAFT_0473 at 456.900 kb on - strand, within EX28DRAFT_0473 at 456.900 kb on - strand, within EX28DRAFT_0473 at 456.911 kb on + strand, within EX28DRAFT_0473 at 456.912 kb on - strand, within EX28DRAFT_0473
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 453,969 + +0.3 453,970 - +0.6 453,986 - +0.0 453,988 - +0.5 454,008 + +0.9 454,008 + +0.9 454,501 - EX28DRAFT_0471 0.54 +0.7 454,505 - EX28DRAFT_0471 0.55 +0.6 454,692 - EX28DRAFT_0471 0.74 +0.1 454,692 - EX28DRAFT_0471 0.74 -0.1 454,790 + EX28DRAFT_0471 0.84 -0.7 454,937 + +0.3 454,938 - -0.4 455,220 + EX28DRAFT_0472 0.28 +0.8 455,284 + EX28DRAFT_0472 0.35 -1.7 455,284 + EX28DRAFT_0472 0.35 +0.1 455,674 + EX28DRAFT_0472 0.74 -2.9 455,675 - EX28DRAFT_0472 0.74 +0.3 455,675 - EX28DRAFT_0472 0.74 +0.2 455,794 + EX28DRAFT_0472 0.86 -0.0 455,795 - EX28DRAFT_0472 0.86 +0.2 455,795 - EX28DRAFT_0472 0.86 +0.2 455,814 - EX28DRAFT_0472 0.88 -0.3 455,940 + -0.2 455,940 + -0.9 455,940 + +0.0 456,024 + +0.2 456,025 - +0.8 456,114 - EX28DRAFT_0473 0.14 +1.0 456,189 + EX28DRAFT_0473 0.20 +0.5 456,242 + EX28DRAFT_0473 0.24 -0.2 456,243 - EX28DRAFT_0473 0.24 -0.2 456,247 - EX28DRAFT_0473 0.24 +1.2 456,247 - EX28DRAFT_0473 0.24 +0.5 456,248 + EX28DRAFT_0473 0.24 -0.1 456,248 + EX28DRAFT_0473 0.24 +0.2 456,249 - EX28DRAFT_0473 0.25 +1.2 456,260 + EX28DRAFT_0473 0.25 -0.2 456,261 - EX28DRAFT_0473 0.26 -0.5 456,263 + EX28DRAFT_0473 0.26 -0.0 456,264 - EX28DRAFT_0473 0.26 +0.0 456,273 - EX28DRAFT_0473 0.26 +0.3 456,314 + EX28DRAFT_0473 0.30 +0.2 456,389 - EX28DRAFT_0473 0.36 +0.1 456,399 + EX28DRAFT_0473 0.36 -0.7 456,418 - EX28DRAFT_0473 0.38 -0.1 456,439 - EX28DRAFT_0473 0.39 +0.3 456,527 + EX28DRAFT_0473 0.46 -0.4 456,527 + EX28DRAFT_0473 0.46 -0.1 456,527 + EX28DRAFT_0473 0.46 -0.4 456,528 - EX28DRAFT_0473 0.46 +0.2 456,528 - EX28DRAFT_0473 0.46 -0.2 456,528 - EX28DRAFT_0473 0.46 -0.2 456,531 - EX28DRAFT_0473 0.47 +0.3 456,531 - EX28DRAFT_0473 0.47 -0.5 456,663 + EX28DRAFT_0473 0.57 -0.9 456,663 + EX28DRAFT_0473 0.57 +0.3 456,898 - EX28DRAFT_0473 0.75 -0.9 456,899 + EX28DRAFT_0473 0.75 +0.9 456,899 + EX28DRAFT_0473 0.75 +0.6 456,899 + EX28DRAFT_0473 0.75 -0.5 456,899 + EX28DRAFT_0473 0.75 -0.5 456,900 - EX28DRAFT_0473 0.76 +0.2 456,900 - EX28DRAFT_0473 0.76 -0.7 456,900 - EX28DRAFT_0473 0.76 -0.2 456,911 + EX28DRAFT_0473 0.76 -0.5 456,912 - EX28DRAFT_0473 0.76 +0.8
Or see this region's nucleotide sequence