Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0436 and EX28DRAFT_0437 overlap by 7 nucleotides EX28DRAFT_0437 and EX28DRAFT_0438 are separated by 46 nucleotides EX28DRAFT_0438 and EX28DRAFT_0439 are separated by 106 nucleotides
EX28DRAFT_0436: EX28DRAFT_0436 - Putative regulator of cell autolysis, at 416,356 to 418,041
_0436
EX28DRAFT_0437: EX28DRAFT_0437 - two component transcriptional regulator, LytTR family, at 418,035 to 418,754
_0437
EX28DRAFT_0438: EX28DRAFT_0438 - Uncharacterized protein conserved in bacteria, at 418,801 to 419,271
_0438
EX28DRAFT_0439: EX28DRAFT_0439 - methionyl-tRNA synthetase (EC 6.1.1.10), at 419,378 to 421,411
_0439
Position (kb) 418
419
420 Strain fitness (log2 ratio) -1
0
1
2 at 417.873 kb on + strand at 417.873 kb on + strand at 417.886 kb on + strand at 418.010 kb on + strand at 418.039 kb on + strand at 418.039 kb on + strand at 418.112 kb on + strand, within EX28DRAFT_0437 at 418.113 kb on - strand, within EX28DRAFT_0437 at 418.115 kb on - strand, within EX28DRAFT_0437 at 418.330 kb on + strand, within EX28DRAFT_0437 at 418.331 kb on - strand, within EX28DRAFT_0437 at 418.471 kb on - strand, within EX28DRAFT_0437 at 418.800 kb on + strand at 418.800 kb on + strand at 418.801 kb on - strand at 418.805 kb on + strand at 418.805 kb on + strand at 418.810 kb on - strand at 418.855 kb on - strand, within EX28DRAFT_0438 at 418.996 kb on + strand, within EX28DRAFT_0438 at 418.997 kb on - strand, within EX28DRAFT_0438 at 419.224 kb on - strand, within EX28DRAFT_0438 at 419.361 kb on - strand at 419.361 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 417,873 + -0.8 417,873 + -1.2 417,886 + -0.2 418,010 + +0.4 418,039 + +0.1 418,039 + +0.2 418,112 + EX28DRAFT_0437 0.11 +0.1 418,113 - EX28DRAFT_0437 0.11 +0.2 418,115 - EX28DRAFT_0437 0.11 -0.3 418,330 + EX28DRAFT_0437 0.41 +0.3 418,331 - EX28DRAFT_0437 0.41 +1.0 418,471 - EX28DRAFT_0437 0.61 +2.3 418,800 + -0.4 418,800 + +0.3 418,801 - -0.8 418,805 + +0.1 418,805 + +0.1 418,810 - -0.1 418,855 - EX28DRAFT_0438 0.11 -0.4 418,996 + EX28DRAFT_0438 0.41 -0.8 418,997 - EX28DRAFT_0438 0.42 -0.7 419,224 - EX28DRAFT_0438 0.90 +0.4 419,361 - +2.0 419,361 - +1.5
Or see this region's nucleotide sequence