Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0409 and EX28DRAFT_0410 are separated by 49 nucleotides EX28DRAFT_0410 and EX28DRAFT_0411 are separated by 124 nucleotides EX28DRAFT_0411 and EX28DRAFT_0412 are separated by 126 nucleotides
EX28DRAFT_0409: EX28DRAFT_0409 - ABC-type glucose/galactose transport system, permease component, at 386,991 to 388,001
_0409
EX28DRAFT_0410: EX28DRAFT_0410 - Glutamine synthetase, at 388,051 to 389,439
_0410
EX28DRAFT_0411: EX28DRAFT_0411 - Uncharacterized membrane protein, at 389,564 to 390,280
_0411
EX28DRAFT_0412: EX28DRAFT_0412 - cytidine deaminase (EC 3.5.4.5), at 390,407 to 391,291
_0412
Position (kb) 388
389
390 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 387.059 kb on - strand at 387.061 kb on + strand at 387.093 kb on - strand, within EX28DRAFT_0409 at 387.100 kb on + strand, within EX28DRAFT_0409 at 387.146 kb on + strand, within EX28DRAFT_0409 at 387.147 kb on - strand, within EX28DRAFT_0409 at 387.362 kb on + strand, within EX28DRAFT_0409 at 387.365 kb on + strand, within EX28DRAFT_0409 at 387.375 kb on + strand, within EX28DRAFT_0409 at 387.411 kb on - strand, within EX28DRAFT_0409 at 387.444 kb on + strand, within EX28DRAFT_0409 at 387.445 kb on - strand, within EX28DRAFT_0409 at 387.543 kb on + strand, within EX28DRAFT_0409 at 387.543 kb on + strand, within EX28DRAFT_0409 at 387.543 kb on + strand, within EX28DRAFT_0409 at 387.544 kb on - strand, within EX28DRAFT_0409 at 387.544 kb on - strand, within EX28DRAFT_0409 at 387.544 kb on - strand, within EX28DRAFT_0409 at 387.545 kb on + strand, within EX28DRAFT_0409 at 387.545 kb on + strand, within EX28DRAFT_0409 at 387.555 kb on + strand, within EX28DRAFT_0409 at 387.714 kb on + strand, within EX28DRAFT_0409 at 387.780 kb on + strand, within EX28DRAFT_0409 at 387.781 kb on - strand, within EX28DRAFT_0409 at 387.930 kb on + strand at 387.936 kb on - strand at 387.985 kb on - strand at 387.999 kb on + strand at 387.999 kb on + strand at 388.000 kb on - strand at 388.045 kb on + strand at 388.046 kb on - strand at 388.052 kb on + strand at 388.164 kb on - strand at 388.399 kb on - strand, within EX28DRAFT_0410 at 388.400 kb on + strand, within EX28DRAFT_0410 at 388.414 kb on - strand, within EX28DRAFT_0410 at 388.537 kb on - strand, within EX28DRAFT_0410 at 388.747 kb on + strand, within EX28DRAFT_0410 at 388.755 kb on - strand, within EX28DRAFT_0410 at 388.855 kb on - strand, within EX28DRAFT_0410 at 388.858 kb on - strand, within EX28DRAFT_0410 at 388.858 kb on - strand, within EX28DRAFT_0410 at 388.985 kb on - strand, within EX28DRAFT_0410 at 389.013 kb on + strand, within EX28DRAFT_0410 at 389.266 kb on + strand, within EX28DRAFT_0410 at 389.266 kb on + strand, within EX28DRAFT_0410 at 389.266 kb on + strand, within EX28DRAFT_0410 at 389.267 kb on - strand, within EX28DRAFT_0410 at 389.386 kb on + strand at 389.440 kb on + strand at 389.441 kb on - strand at 389.494 kb on - strand at 389.549 kb on - strand at 389.550 kb on + strand at 389.551 kb on - strand at 389.566 kb on - strand at 389.585 kb on - strand at 389.672 kb on + strand, within EX28DRAFT_0411 at 389.700 kb on + strand, within EX28DRAFT_0411 at 389.700 kb on + strand, within EX28DRAFT_0411 at 389.701 kb on - strand, within EX28DRAFT_0411 at 389.759 kb on - strand, within EX28DRAFT_0411 at 389.781 kb on + strand, within EX28DRAFT_0411 at 389.804 kb on - strand, within EX28DRAFT_0411 at 390.030 kb on + strand, within EX28DRAFT_0411 at 390.030 kb on + strand, within EX28DRAFT_0411 at 390.030 kb on + strand, within EX28DRAFT_0411 at 390.051 kb on + strand, within EX28DRAFT_0411 at 390.052 kb on - strand, within EX28DRAFT_0411 at 390.088 kb on - strand, within EX28DRAFT_0411 at 390.114 kb on + strand, within EX28DRAFT_0411 at 390.115 kb on - strand, within EX28DRAFT_0411 at 390.180 kb on + strand, within EX28DRAFT_0411 at 390.181 kb on - strand, within EX28DRAFT_0411 at 390.237 kb on - strand at 390.237 kb on - strand at 390.318 kb on + strand at 390.419 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 387,059 - -0.4 387,061 + +0.3 387,093 - EX28DRAFT_0409 0.10 -0.4 387,100 + EX28DRAFT_0409 0.11 +0.5 387,146 + EX28DRAFT_0409 0.15 +0.3 387,147 - EX28DRAFT_0409 0.15 -0.2 387,362 + EX28DRAFT_0409 0.37 +1.2 387,365 + EX28DRAFT_0409 0.37 +0.3 387,375 + EX28DRAFT_0409 0.38 -0.5 387,411 - EX28DRAFT_0409 0.42 -0.1 387,444 + EX28DRAFT_0409 0.45 +0.3 387,445 - EX28DRAFT_0409 0.45 -1.2 387,543 + EX28DRAFT_0409 0.55 -1.0 387,543 + EX28DRAFT_0409 0.55 -0.2 387,543 + EX28DRAFT_0409 0.55 -0.3 387,544 - EX28DRAFT_0409 0.55 +0.9 387,544 - EX28DRAFT_0409 0.55 +0.4 387,544 - EX28DRAFT_0409 0.55 +0.2 387,545 + EX28DRAFT_0409 0.55 +0.0 387,545 + EX28DRAFT_0409 0.55 +0.5 387,555 + EX28DRAFT_0409 0.56 -1.8 387,714 + EX28DRAFT_0409 0.72 +0.4 387,780 + EX28DRAFT_0409 0.78 -0.2 387,781 - EX28DRAFT_0409 0.78 -2.1 387,930 + +0.4 387,936 - +0.7 387,985 - +1.1 387,999 + -0.4 387,999 + +0.2 388,000 - +0.3 388,045 + -0.4 388,046 - -0.1 388,052 + -0.2 388,164 - +0.5 388,399 - EX28DRAFT_0410 0.25 -1.0 388,400 + EX28DRAFT_0410 0.25 -0.0 388,414 - EX28DRAFT_0410 0.26 +1.2 388,537 - EX28DRAFT_0410 0.35 +0.4 388,747 + EX28DRAFT_0410 0.50 -2.3 388,755 - EX28DRAFT_0410 0.51 -0.2 388,855 - EX28DRAFT_0410 0.58 -0.3 388,858 - EX28DRAFT_0410 0.58 +1.2 388,858 - EX28DRAFT_0410 0.58 -0.7 388,985 - EX28DRAFT_0410 0.67 +0.8 389,013 + EX28DRAFT_0410 0.69 -0.4 389,266 + EX28DRAFT_0410 0.87 +0.1 389,266 + EX28DRAFT_0410 0.87 -1.1 389,266 + EX28DRAFT_0410 0.87 -0.3 389,267 - EX28DRAFT_0410 0.88 +0.2 389,386 + +0.8 389,440 + -0.3 389,441 - +0.2 389,494 - -2.5 389,549 - -0.5 389,550 + +0.2 389,551 - +0.4 389,566 - -0.3 389,585 - +0.0 389,672 + EX28DRAFT_0411 0.15 -1.8 389,700 + EX28DRAFT_0411 0.19 -3.2 389,700 + EX28DRAFT_0411 0.19 -1.3 389,701 - EX28DRAFT_0411 0.19 -0.6 389,759 - EX28DRAFT_0411 0.27 -0.9 389,781 + EX28DRAFT_0411 0.30 -0.9 389,804 - EX28DRAFT_0411 0.33 -1.7 390,030 + EX28DRAFT_0411 0.65 -1.6 390,030 + EX28DRAFT_0411 0.65 -0.8 390,030 + EX28DRAFT_0411 0.65 -0.8 390,051 + EX28DRAFT_0411 0.68 -1.1 390,052 - EX28DRAFT_0411 0.68 -0.1 390,088 - EX28DRAFT_0411 0.73 -1.1 390,114 + EX28DRAFT_0411 0.77 -1.1 390,115 - EX28DRAFT_0411 0.77 -2.5 390,180 + EX28DRAFT_0411 0.86 -1.8 390,181 - EX28DRAFT_0411 0.86 -1.2 390,237 - -1.6 390,237 - -0.9 390,318 + -4.3 390,419 + +0.4
Or see this region's nucleotide sequence