Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0315

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0313 and EX28DRAFT_0314 are separated by 337 nucleotidesEX28DRAFT_0314 and EX28DRAFT_0315 are separated by 92 nucleotidesEX28DRAFT_0315 and EX28DRAFT_0316 are separated by 11 nucleotidesEX28DRAFT_0316 and EX28DRAFT_0317 are separated by 75 nucleotides EX28DRAFT_0313: EX28DRAFT_0313 - acetate kinase, at 272,959 to 274,161 _0313 EX28DRAFT_0314: EX28DRAFT_0314 - Uncharacterized protein conserved in bacteria, at 274,499 to 274,954 _0314 EX28DRAFT_0315: EX28DRAFT_0315 - Uncharacterized conserved protein, at 275,047 to 275,541 _0315 EX28DRAFT_0316: EX28DRAFT_0316 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E, at 275,553 to 276,212 _0316 EX28DRAFT_0317: EX28DRAFT_0317 - Di- and tricarboxylate transporters, at 276,288 to 278,120 _0317 Position (kb) 275 276Strain fitness (log2 ratio) -2 -1 0 1at 274.147 kb on + strandat 274.171 kb on + strandat 274.171 kb on + strandat 274.172 kb on - strandat 274.180 kb on + strandat 274.181 kb on - strandat 274.240 kb on - strandat 274.291 kb on - strandat 274.291 kb on - strandat 274.525 kb on - strandat 274.670 kb on - strand, within EX28DRAFT_0314at 274.801 kb on + strand, within EX28DRAFT_0314at 274.802 kb on - strand, within EX28DRAFT_0314at 274.802 kb on - strand, within EX28DRAFT_0314at 274.806 kb on + strand, within EX28DRAFT_0314at 274.905 kb on + strand, within EX28DRAFT_0314at 275.089 kb on + strandat 275.089 kb on + strandat 275.090 kb on - strandat 275.104 kb on - strand, within EX28DRAFT_0315at 275.153 kb on + strand, within EX28DRAFT_0315at 275.251 kb on + strand, within EX28DRAFT_0315at 275.251 kb on + strand, within EX28DRAFT_0315at 275.251 kb on + strand, within EX28DRAFT_0315at 275.251 kb on + strand, within EX28DRAFT_0315at 275.251 kb on + strand, within EX28DRAFT_0315at 275.252 kb on - strand, within EX28DRAFT_0315at 275.252 kb on - strand, within EX28DRAFT_0315at 275.324 kb on + strand, within EX28DRAFT_0315at 275.324 kb on + strand, within EX28DRAFT_0315at 275.325 kb on - strand, within EX28DRAFT_0315at 275.362 kb on + strand, within EX28DRAFT_0315at 275.362 kb on + strand, within EX28DRAFT_0315at 275.362 kb on + strand, within EX28DRAFT_0315at 275.382 kb on + strand, within EX28DRAFT_0315at 275.397 kb on + strand, within EX28DRAFT_0315at 275.455 kb on + strand, within EX28DRAFT_0315at 275.455 kb on + strand, within EX28DRAFT_0315at 275.463 kb on + strand, within EX28DRAFT_0315at 275.463 kb on + strand, within EX28DRAFT_0315at 275.463 kb on + strand, within EX28DRAFT_0315at 275.464 kb on - strand, within EX28DRAFT_0315at 275.469 kb on - strand, within EX28DRAFT_0315at 275.504 kb on + strandat 275.504 kb on + strandat 275.532 kb on + strandat 275.561 kb on + strandat 275.562 kb on - strandat 275.868 kb on - strand, within EX28DRAFT_0316at 276.055 kb on + strand, within EX28DRAFT_0316at 276.190 kb on + strandat 276.191 kb on - strandat 276.210 kb on + strandat 276.210 kb on + strandat 276.211 kb on - strandat 276.453 kb on - strandat 276.479 kb on + strand, within EX28DRAFT_0317at 276.479 kb on + strand, within EX28DRAFT_0317at 276.480 kb on - strand, within EX28DRAFT_0317

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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274,147 + +0.4
274,171 + +1.0
274,171 + -0.2
274,172 - -0.7
274,180 + +0.4
274,181 - -0.7
274,240 - +0.4
274,291 - +0.1
274,291 - +0.7
274,525 - -0.3
274,670 - EX28DRAFT_0314 0.38 -0.9
274,801 + EX28DRAFT_0314 0.66 -1.0
274,802 - EX28DRAFT_0314 0.66 +0.1
274,802 - EX28DRAFT_0314 0.66 -1.2
274,806 + EX28DRAFT_0314 0.67 -1.0
274,905 + EX28DRAFT_0314 0.89 -0.6
275,089 + +0.7
275,089 + +0.2
275,090 - +0.2
275,104 - EX28DRAFT_0315 0.12 -0.3
275,153 + EX28DRAFT_0315 0.21 -2.2
275,251 + EX28DRAFT_0315 0.41 +0.1
275,251 + EX28DRAFT_0315 0.41 +0.5
275,251 + EX28DRAFT_0315 0.41 +0.3
275,251 + EX28DRAFT_0315 0.41 -0.4
275,251 + EX28DRAFT_0315 0.41 -0.2
275,252 - EX28DRAFT_0315 0.41 -0.5
275,252 - EX28DRAFT_0315 0.41 +0.1
275,324 + EX28DRAFT_0315 0.56 +0.3
275,324 + EX28DRAFT_0315 0.56 +0.7
275,325 - EX28DRAFT_0315 0.56 +0.4
275,362 + EX28DRAFT_0315 0.64 +1.7
275,362 + EX28DRAFT_0315 0.64 +0.1
275,362 + EX28DRAFT_0315 0.64 +0.1
275,382 + EX28DRAFT_0315 0.68 -0.2
275,397 + EX28DRAFT_0315 0.71 +0.4
275,455 + EX28DRAFT_0315 0.82 +0.6
275,455 + EX28DRAFT_0315 0.82 +0.2
275,463 + EX28DRAFT_0315 0.84 -0.0
275,463 + EX28DRAFT_0315 0.84 +0.4
275,463 + EX28DRAFT_0315 0.84 -0.1
275,464 - EX28DRAFT_0315 0.84 -0.4
275,469 - EX28DRAFT_0315 0.85 -0.1
275,504 + +1.1
275,504 + +0.6
275,532 + -0.1
275,561 + +1.1
275,562 - -0.1
275,868 - EX28DRAFT_0316 0.48 +0.5
276,055 + EX28DRAFT_0316 0.76 +0.0
276,190 + -0.5
276,191 - -0.2
276,210 + +0.0
276,210 + -0.2
276,211 - +0.0
276,453 - +0.1
276,479 + EX28DRAFT_0317 0.10 -0.2
276,479 + EX28DRAFT_0317 0.10 -0.1
276,480 - EX28DRAFT_0317 0.10 -0.1

Or see this region's nucleotide sequence