Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0171 and EX28DRAFT_0172 are separated by 81 nucleotides EX28DRAFT_0172 and EX28DRAFT_0173 are separated by 41 nucleotides EX28DRAFT_0173 and EX28DRAFT_0174 overlap by 1 nucleotides EX28DRAFT_0174 and EX28DRAFT_0175 are separated by 3 nucleotides
EX28DRAFT_0171: EX28DRAFT_0171 - uracil-xanthine permease, at 120,367 to 121,656
_0171
EX28DRAFT_0172: EX28DRAFT_0172 - regulatory inactivation of DnaA Hda protein, at 121,738 to 122,454
_0172
EX28DRAFT_0173: EX28DRAFT_0173 - Leucyl aminopeptidase, at 122,496 to 123,914
_0173
EX28DRAFT_0174: EX28DRAFT_0174 - Asparaginase, at 123,914 to 124,870
_0174
EX28DRAFT_0175: EX28DRAFT_0175 - phosphotransferase system, cellobiose specific, IIC component, at 124,874 to 126,193
_0175
Position (kb) 122
123
124 Strain fitness (log2 ratio) -2
-1
0
1 at 121.730 kb on + strand at 122.452 kb on + strand at 122.453 kb on - strand at 122.453 kb on - strand at 122.497 kb on + strand at 122.556 kb on - strand at 122.588 kb on + strand at 122.877 kb on - strand, within EX28DRAFT_0173 at 122.877 kb on - strand, within EX28DRAFT_0173 at 122.879 kb on + strand, within EX28DRAFT_0173 at 122.882 kb on - strand, within EX28DRAFT_0173 at 123.130 kb on + strand, within EX28DRAFT_0173 at 123.131 kb on - strand, within EX28DRAFT_0173 at 123.142 kb on + strand, within EX28DRAFT_0173 at 123.142 kb on + strand, within EX28DRAFT_0173 at 123.143 kb on - strand, within EX28DRAFT_0173 at 123.143 kb on - strand, within EX28DRAFT_0173 at 123.143 kb on - strand, within EX28DRAFT_0173 at 123.143 kb on - strand, within EX28DRAFT_0173 at 123.143 kb on - strand, within EX28DRAFT_0173 at 123.188 kb on + strand, within EX28DRAFT_0173 at 123.188 kb on + strand, within EX28DRAFT_0173 at 123.205 kb on + strand, within EX28DRAFT_0173 at 123.205 kb on + strand, within EX28DRAFT_0173 at 123.206 kb on - strand, within EX28DRAFT_0173 at 123.206 kb on - strand, within EX28DRAFT_0173 at 123.648 kb on + strand, within EX28DRAFT_0173 at 123.839 kb on + strand at 123.896 kb on + strand at 123.896 kb on + strand at 123.897 kb on - strand at 123.905 kb on - strand at 123.905 kb on - strand at 123.908 kb on + strand at 123.908 kb on + strand at 123.908 kb on + strand at 123.951 kb on + strand at 123.952 kb on - strand at 123.985 kb on - strand at 124.113 kb on - strand, within EX28DRAFT_0174 at 124.202 kb on - strand, within EX28DRAFT_0174 at 124.302 kb on + strand, within EX28DRAFT_0174 at 124.510 kb on + strand, within EX28DRAFT_0174 at 124.511 kb on - strand, within EX28DRAFT_0174 at 124.511 kb on - strand, within EX28DRAFT_0174 at 124.511 kb on - strand, within EX28DRAFT_0174 at 124.511 kb on - strand, within EX28DRAFT_0174 at 124.578 kb on + strand, within EX28DRAFT_0174 at 124.660 kb on + strand, within EX28DRAFT_0174 at 124.735 kb on + strand, within EX28DRAFT_0174 at 124.875 kb on + strand at 124.876 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 121,730 + -1.2 122,452 + +0.2 122,453 - +0.3 122,453 - +0.4 122,497 + +1.3 122,556 - -0.1 122,588 + +0.5 122,877 - EX28DRAFT_0173 0.27 -0.2 122,877 - EX28DRAFT_0173 0.27 -0.1 122,879 + EX28DRAFT_0173 0.27 -2.1 122,882 - EX28DRAFT_0173 0.27 -0.4 123,130 + EX28DRAFT_0173 0.45 +0.0 123,131 - EX28DRAFT_0173 0.45 -0.3 123,142 + EX28DRAFT_0173 0.46 -0.5 123,142 + EX28DRAFT_0173 0.46 +0.1 123,143 - EX28DRAFT_0173 0.46 -0.9 123,143 - EX28DRAFT_0173 0.46 +0.3 123,143 - EX28DRAFT_0173 0.46 +1.1 123,143 - EX28DRAFT_0173 0.46 +0.1 123,143 - EX28DRAFT_0173 0.46 +0.4 123,188 + EX28DRAFT_0173 0.49 -0.1 123,188 + EX28DRAFT_0173 0.49 +0.5 123,205 + EX28DRAFT_0173 0.50 -0.2 123,205 + EX28DRAFT_0173 0.50 -0.3 123,206 - EX28DRAFT_0173 0.50 -0.4 123,206 - EX28DRAFT_0173 0.50 -0.5 123,648 + EX28DRAFT_0173 0.81 -0.8 123,839 + -0.3 123,896 + -0.3 123,896 + +0.8 123,897 - +0.1 123,905 - +0.1 123,905 - +0.6 123,908 + -0.3 123,908 + -0.4 123,908 + -0.3 123,951 + +0.5 123,952 - -0.7 123,985 - -0.3 124,113 - EX28DRAFT_0174 0.21 -0.4 124,202 - EX28DRAFT_0174 0.30 -0.1 124,302 + EX28DRAFT_0174 0.41 +0.1 124,510 + EX28DRAFT_0174 0.62 +0.6 124,511 - EX28DRAFT_0174 0.62 +0.7 124,511 - EX28DRAFT_0174 0.62 -0.0 124,511 - EX28DRAFT_0174 0.62 +0.5 124,511 - EX28DRAFT_0174 0.62 +0.4 124,578 + EX28DRAFT_0174 0.69 +0.2 124,660 + EX28DRAFT_0174 0.78 -0.8 124,735 + EX28DRAFT_0174 0.86 -0.0 124,875 + +0.1 124,876 - -0.0
Or see this region's nucleotide sequence