Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19765

Experiment: m.b. perchlorate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19760 and CA264_19765 are separated by 412 nucleotidesCA264_19765 and CA264_19770 are separated by 219 nucleotidesCA264_19770 and CA264_19775 are separated by 10 nucleotides CA264_19760: CA264_19760 - hypothetical protein, at 4,561,411 to 4,562,124 _19760 CA264_19765: CA264_19765 - hypothetical protein, at 4,562,537 to 4,562,944 _19765 CA264_19770: CA264_19770 - ATPase, at 4,563,164 to 4,563,688 _19770 CA264_19775: CA264_19775 - aldose epimerase, at 4,563,699 to 4,564,574 _19775 Position (kb) 4562 4563Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4561.541 kb on - strand, within CA264_19760at 4561.687 kb on + strand, within CA264_19760at 4561.691 kb on - strand, within CA264_19760at 4561.750 kb on + strand, within CA264_19760at 4561.750 kb on + strand, within CA264_19760at 4561.751 kb on - strand, within CA264_19760at 4561.751 kb on - strand, within CA264_19760at 4561.912 kb on + strand, within CA264_19760at 4562.020 kb on - strand, within CA264_19760at 4562.128 kb on + strandat 4562.229 kb on + strandat 4562.230 kb on - strandat 4562.273 kb on + strandat 4562.274 kb on + strandat 4562.274 kb on + strandat 4562.275 kb on - strandat 4562.275 kb on - strandat 4562.275 kb on - strandat 4562.275 kb on - strandat 4562.275 kb on - strandat 4562.278 kb on + strandat 4562.278 kb on + strandat 4562.278 kb on + strandat 4562.278 kb on + strandat 4562.281 kb on - strandat 4562.308 kb on + strandat 4562.315 kb on + strandat 4562.316 kb on - strandat 4562.316 kb on - strandat 4562.316 kb on - strandat 4562.487 kb on - strandat 4562.487 kb on - strandat 4562.519 kb on + strandat 4562.519 kb on + strandat 4562.561 kb on + strandat 4562.561 kb on + strandat 4562.562 kb on - strandat 4562.562 kb on - strandat 4562.641 kb on + strand, within CA264_19765at 4562.642 kb on - strand, within CA264_19765at 4562.642 kb on - strand, within CA264_19765at 4562.642 kb on - strand, within CA264_19765at 4562.649 kb on - strand, within CA264_19765at 4562.651 kb on - strand, within CA264_19765at 4562.680 kb on + strand, within CA264_19765at 4562.758 kb on - strand, within CA264_19765at 4562.882 kb on + strand, within CA264_19765at 4562.882 kb on + strand, within CA264_19765at 4562.907 kb on + strandat 4562.908 kb on - strandat 4562.947 kb on + strandat 4563.087 kb on - strandat 4563.118 kb on - strandat 4563.118 kb on - strandat 4563.146 kb on - strandat 4563.272 kb on + strand, within CA264_19770at 4563.312 kb on + strand, within CA264_19770at 4563.313 kb on - strand, within CA264_19770at 4563.394 kb on + strand, within CA264_19770at 4563.686 kb on + strandat 4563.703 kb on + strandat 4563.704 kb on - strandat 4563.704 kb on - strandat 4563.704 kb on - strandat 4563.704 kb on - strandat 4563.705 kb on + strandat 4563.706 kb on - strandat 4563.706 kb on - strandat 4563.706 kb on - strandat 4563.854 kb on - strand, within CA264_19775at 4563.854 kb on - strand, within CA264_19775at 4563.857 kb on - strand, within CA264_19775at 4563.879 kb on + strand, within CA264_19775at 4563.880 kb on - strand, within CA264_19775at 4563.882 kb on - strand, within CA264_19775at 4563.900 kb on + strand, within CA264_19775at 4563.941 kb on + strand, within CA264_19775at 4563.941 kb on + strand, within CA264_19775at 4563.942 kb on - strand, within CA264_19775

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM
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4,561,541 - CA264_19760 0.18 -0.3
4,561,687 + CA264_19760 0.39 -1.3
4,561,691 - CA264_19760 0.39 -0.9
4,561,750 + CA264_19760 0.47 -1.1
4,561,750 + CA264_19760 0.47 -1.2
4,561,751 - CA264_19760 0.48 +0.5
4,561,751 - CA264_19760 0.48 +0.0
4,561,912 + CA264_19760 0.70 -0.1
4,562,020 - CA264_19760 0.85 +0.5
4,562,128 + -2.1
4,562,229 + +0.4
4,562,230 - -0.0
4,562,273 + +0.7
4,562,274 + -0.6
4,562,274 + -0.5
4,562,275 - +0.1
4,562,275 - +1.7
4,562,275 - -0.4
4,562,275 - -1.1
4,562,275 - +0.2
4,562,278 + +2.1
4,562,278 + +1.4
4,562,278 + -1.4
4,562,278 + -0.3
4,562,281 - -0.7
4,562,308 + -0.3
4,562,315 + -0.7
4,562,316 - -0.4
4,562,316 - +0.1
4,562,316 - -2.4
4,562,487 - -0.4
4,562,487 - -0.4
4,562,519 + +0.0
4,562,519 + -0.4
4,562,561 + +0.3
4,562,561 + -0.5
4,562,562 - +0.6
4,562,562 - -0.0
4,562,641 + CA264_19765 0.25 -0.7
4,562,642 - CA264_19765 0.26 +0.5
4,562,642 - CA264_19765 0.26 -0.4
4,562,642 - CA264_19765 0.26 +0.6
4,562,649 - CA264_19765 0.27 +0.0
4,562,651 - CA264_19765 0.28 -0.0
4,562,680 + CA264_19765 0.35 +1.1
4,562,758 - CA264_19765 0.54 +0.4
4,562,882 + CA264_19765 0.85 +0.6
4,562,882 + CA264_19765 0.85 -1.8
4,562,907 + +0.0
4,562,908 - -0.4
4,562,947 + +0.8
4,563,087 - -0.2
4,563,118 - -0.3
4,563,118 - +1.0
4,563,146 - -0.6
4,563,272 + CA264_19770 0.21 -2.1
4,563,312 + CA264_19770 0.28 -3.2
4,563,313 - CA264_19770 0.28 -2.5
4,563,394 + CA264_19770 0.44 -1.4
4,563,686 + -0.1
4,563,703 + -0.4
4,563,704 - -0.2
4,563,704 - -1.6
4,563,704 - -0.5
4,563,704 - +0.2
4,563,705 + +0.3
4,563,706 - -0.3
4,563,706 - +0.1
4,563,706 - +1.1
4,563,854 - CA264_19775 0.18 -0.3
4,563,854 - CA264_19775 0.18 -0.4
4,563,857 - CA264_19775 0.18 -0.3
4,563,879 + CA264_19775 0.21 -0.6
4,563,880 - CA264_19775 0.21 +0.2
4,563,882 - CA264_19775 0.21 -0.1
4,563,900 + CA264_19775 0.23 -0.3
4,563,941 + CA264_19775 0.28 +1.0
4,563,941 + CA264_19775 0.28 -1.1
4,563,942 - CA264_19775 0.28 -0.2

Or see this region's nucleotide sequence