Experiment: m.b. perchlorate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_18030 and CA264_18035 are separated by 109 nucleotides CA264_18035 and CA264_18040 are separated by 65 nucleotides
CA264_18030: CA264_18030 - cation transporter, at 4,192,439 to 4,193,710
_18030
CA264_18035: CA264_18035 - alpha-ketoglutarate-dependent dioxygenase AlkB, at 4,193,820 to 4,194,410
_18035
CA264_18040: CA264_18040 - kynurenine 3-monooxygenase, at 4,194,476 to 4,195,843
_18040
Position (kb)
4193
4194
4195 Strain fitness (log2 ratio)
-2
-1
0
1 at 4192.828 kb on - strand, within CA264_18030 at 4193.040 kb on - strand, within CA264_18030 at 4193.093 kb on + strand, within CA264_18030 at 4193.267 kb on + strand, within CA264_18030 at 4193.268 kb on - strand, within CA264_18030 at 4193.302 kb on - strand, within CA264_18030 at 4193.394 kb on + strand, within CA264_18030 at 4193.395 kb on - strand, within CA264_18030 at 4193.522 kb on + strand, within CA264_18030 at 4193.542 kb on + strand, within CA264_18030 at 4193.584 kb on - strand at 4193.613 kb on + strand at 4193.613 kb on + strand at 4193.808 kb on + strand at 4193.809 kb on - strand at 4193.834 kb on - strand at 4193.907 kb on + strand, within CA264_18035 at 4193.908 kb on - strand, within CA264_18035 at 4193.933 kb on - strand, within CA264_18035 at 4193.953 kb on + strand, within CA264_18035 at 4193.954 kb on - strand, within CA264_18035 at 4194.021 kb on + strand, within CA264_18035 at 4194.021 kb on + strand, within CA264_18035 at 4194.022 kb on - strand, within CA264_18035 at 4194.108 kb on + strand, within CA264_18035 at 4194.109 kb on - strand, within CA264_18035 at 4194.200 kb on + strand, within CA264_18035 at 4194.302 kb on - strand, within CA264_18035 at 4194.350 kb on + strand, within CA264_18035 at 4194.351 kb on - strand, within CA264_18035 at 4194.445 kb on + strand at 4194.476 kb on - strand at 4194.540 kb on - strand at 4194.675 kb on + strand, within CA264_18040 at 4194.675 kb on + strand, within CA264_18040 at 4194.710 kb on + strand, within CA264_18040 at 4194.711 kb on - strand, within CA264_18040 at 4194.750 kb on - strand, within CA264_18040 at 4194.781 kb on - strand, within CA264_18040 at 4194.782 kb on + strand, within CA264_18040 at 4194.782 kb on + strand, within CA264_18040 at 4194.782 kb on + strand, within CA264_18040 at 4194.783 kb on - strand, within CA264_18040 at 4194.783 kb on - strand, within CA264_18040 at 4194.848 kb on - strand, within CA264_18040 at 4194.915 kb on + strand, within CA264_18040 at 4194.916 kb on - strand, within CA264_18040 at 4194.916 kb on - strand, within CA264_18040 at 4195.019 kb on + strand, within CA264_18040 at 4195.019 kb on + strand, within CA264_18040 at 4195.168 kb on + strand, within CA264_18040 at 4195.174 kb on + strand, within CA264_18040 at 4195.302 kb on - strand, within CA264_18040
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM remove 4,192,828 - CA264_18030 0.31 +0.9 4,193,040 - CA264_18030 0.47 +1.0 4,193,093 + CA264_18030 0.51 +0.1 4,193,267 + CA264_18030 0.65 +0.2 4,193,268 - CA264_18030 0.65 +0.7 4,193,302 - CA264_18030 0.68 +0.6 4,193,394 + CA264_18030 0.75 -0.1 4,193,395 - CA264_18030 0.75 +0.7 4,193,522 + CA264_18030 0.85 +0.3 4,193,542 + CA264_18030 0.87 +1.7 4,193,584 - +0.3 4,193,613 + +1.6 4,193,613 + +0.2 4,193,808 + -2.2 4,193,809 - +0.1 4,193,834 - +0.2 4,193,907 + CA264_18035 0.15 +0.1 4,193,908 - CA264_18035 0.15 -0.2 4,193,933 - CA264_18035 0.19 -1.0 4,193,953 + CA264_18035 0.23 +0.4 4,193,954 - CA264_18035 0.23 +0.5 4,194,021 + CA264_18035 0.34 +1.1 4,194,021 + CA264_18035 0.34 -0.3 4,194,022 - CA264_18035 0.34 +0.4 4,194,108 + CA264_18035 0.49 -0.0 4,194,109 - CA264_18035 0.49 +0.6 4,194,200 + CA264_18035 0.64 +0.2 4,194,302 - CA264_18035 0.82 -0.0 4,194,350 + CA264_18035 0.90 +0.5 4,194,351 - CA264_18035 0.90 +0.6 4,194,445 + -0.6 4,194,476 - -0.6 4,194,540 - -0.9 4,194,675 + CA264_18040 0.15 +0.3 4,194,675 + CA264_18040 0.15 +0.3 4,194,710 + CA264_18040 0.17 -1.0 4,194,711 - CA264_18040 0.17 -0.2 4,194,750 - CA264_18040 0.20 -1.1 4,194,781 - CA264_18040 0.22 -0.6 4,194,782 + CA264_18040 0.22 -0.3 4,194,782 + CA264_18040 0.22 +0.3 4,194,782 + CA264_18040 0.22 -0.8 4,194,783 - CA264_18040 0.22 -2.0 4,194,783 - CA264_18040 0.22 +0.2 4,194,848 - CA264_18040 0.27 +0.6 4,194,915 + CA264_18040 0.32 +0.2 4,194,916 - CA264_18040 0.32 -0.7 4,194,916 - CA264_18040 0.32 -0.4 4,195,019 + CA264_18040 0.40 -1.5 4,195,019 + CA264_18040 0.40 -0.5 4,195,168 + CA264_18040 0.51 +0.5 4,195,174 + CA264_18040 0.51 -0.1 4,195,302 - CA264_18040 0.60 +0.1
Or see this region's nucleotide sequence