Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17125

Experiment: m.b. perchlorate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17120 and CA264_17125 are separated by 189 nucleotidesCA264_17125 and CA264_17130 are separated by 195 nucleotides CA264_17120: CA264_17120 - hypothetical protein, at 3,983,322 to 3,984,740 _17120 CA264_17125: CA264_17125 - DNA repair protein RadA, at 3,984,930 to 3,986,309 _17125 CA264_17130: CA264_17130 - histidine kinase, at 3,986,505 to 3,989,426 _17130 Position (kb) 3984 3985 3986 3987Strain fitness (log2 ratio) -2 -1 0 1 2at 3984.092 kb on - strand, within CA264_17120at 3984.095 kb on + strand, within CA264_17120at 3984.095 kb on + strand, within CA264_17120at 3984.096 kb on - strand, within CA264_17120at 3984.097 kb on + strand, within CA264_17120at 3984.097 kb on + strand, within CA264_17120at 3984.098 kb on - strand, within CA264_17120at 3984.179 kb on - strand, within CA264_17120at 3984.182 kb on + strand, within CA264_17120at 3984.183 kb on - strand, within CA264_17120at 3984.244 kb on + strand, within CA264_17120at 3984.244 kb on + strand, within CA264_17120at 3984.245 kb on - strand, within CA264_17120at 3984.245 kb on - strand, within CA264_17120at 3984.245 kb on - strand, within CA264_17120at 3984.333 kb on + strand, within CA264_17120at 3984.333 kb on + strand, within CA264_17120at 3984.371 kb on - strand, within CA264_17120at 3984.412 kb on + strand, within CA264_17120at 3984.412 kb on + strand, within CA264_17120at 3984.413 kb on - strand, within CA264_17120at 3984.538 kb on - strand, within CA264_17120at 3984.571 kb on - strand, within CA264_17120at 3984.571 kb on - strand, within CA264_17120at 3984.610 kb on + strandat 3984.611 kb on - strandat 3984.752 kb on - strandat 3984.782 kb on + strandat 3984.782 kb on + strandat 3984.856 kb on + strandat 3984.882 kb on + strandat 3984.971 kb on - strandat 3985.021 kb on + strandat 3985.021 kb on + strandat 3985.022 kb on - strandat 3985.034 kb on - strandat 3985.034 kb on - strandat 3985.349 kb on - strand, within CA264_17125at 3985.353 kb on - strand, within CA264_17125at 3985.384 kb on - strand, within CA264_17125at 3985.430 kb on + strand, within CA264_17125at 3985.565 kb on - strand, within CA264_17125at 3985.620 kb on + strand, within CA264_17125at 3985.818 kb on + strand, within CA264_17125at 3985.905 kb on - strand, within CA264_17125at 3985.937 kb on - strand, within CA264_17125at 3985.937 kb on - strand, within CA264_17125at 3986.174 kb on + strandat 3986.175 kb on - strandat 3986.208 kb on + strandat 3986.208 kb on + strandat 3986.208 kb on + strandat 3986.209 kb on - strandat 3986.213 kb on - strandat 3986.213 kb on - strandat 3986.213 kb on - strandat 3986.287 kb on + strandat 3986.287 kb on + strandat 3986.299 kb on - strandat 3986.311 kb on - strandat 3986.311 kb on - strandat 3986.320 kb on + strandat 3986.321 kb on - strandat 3986.351 kb on + strandat 3986.351 kb on + strandat 3986.352 kb on - strandat 3986.427 kb on + strandat 3986.482 kb on - strandat 3986.509 kb on - strandat 3986.539 kb on + strandat 3986.578 kb on - strandat 3986.578 kb on - strandat 3986.622 kb on - strandat 3986.623 kb on + strandat 3986.624 kb on - strandat 3986.624 kb on - strandat 3986.740 kb on + strandat 3986.741 kb on - strandat 3986.741 kb on - strandat 3986.741 kb on - strandat 3986.756 kb on - strandat 3986.795 kb on + strandat 3986.797 kb on + strandat 3986.797 kb on + strandat 3986.798 kb on - strand, within CA264_17130at 3986.824 kb on + strand, within CA264_17130at 3986.824 kb on + strand, within CA264_17130at 3986.825 kb on - strand, within CA264_17130at 3986.825 kb on - strand, within CA264_17130at 3986.828 kb on + strand, within CA264_17130at 3986.862 kb on - strand, within CA264_17130at 3986.930 kb on + strand, within CA264_17130at 3987.030 kb on + strand, within CA264_17130at 3987.180 kb on - strand, within CA264_17130at 3987.180 kb on - strand, within CA264_17130at 3987.264 kb on + strand, within CA264_17130at 3987.264 kb on + strand, within CA264_17130at 3987.264 kb on + strand, within CA264_17130

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM
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3,984,092 - CA264_17120 0.54 +0.6
3,984,095 + CA264_17120 0.54 -0.1
3,984,095 + CA264_17120 0.54 +0.9
3,984,096 - CA264_17120 0.55 -0.7
3,984,097 + CA264_17120 0.55 -0.1
3,984,097 + CA264_17120 0.55 +0.9
3,984,098 - CA264_17120 0.55 -0.4
3,984,179 - CA264_17120 0.60 +0.9
3,984,182 + CA264_17120 0.61 -0.1
3,984,183 - CA264_17120 0.61 +1.0
3,984,244 + CA264_17120 0.65 +1.3
3,984,244 + CA264_17120 0.65 +0.1
3,984,245 - CA264_17120 0.65 +0.4
3,984,245 - CA264_17120 0.65 -0.5
3,984,245 - CA264_17120 0.65 -0.2
3,984,333 + CA264_17120 0.71 -0.2
3,984,333 + CA264_17120 0.71 +0.3
3,984,371 - CA264_17120 0.74 +0.2
3,984,412 + CA264_17120 0.77 +0.8
3,984,412 + CA264_17120 0.77 -0.2
3,984,413 - CA264_17120 0.77 -0.5
3,984,538 - CA264_17120 0.86 +1.5
3,984,571 - CA264_17120 0.88 -1.8
3,984,571 - CA264_17120 0.88 +0.7
3,984,610 + +1.5
3,984,611 - -0.2
3,984,752 - +1.0
3,984,782 + +0.1
3,984,782 + +0.4
3,984,856 + -0.9
3,984,882 + -0.3
3,984,971 - -0.4
3,985,021 + +0.1
3,985,021 + -0.4
3,985,022 - +0.0
3,985,034 - -0.3
3,985,034 - -0.6
3,985,349 - CA264_17125 0.30 +0.6
3,985,353 - CA264_17125 0.31 +0.6
3,985,384 - CA264_17125 0.33 -1.2
3,985,430 + CA264_17125 0.36 -0.2
3,985,565 - CA264_17125 0.46 -1.2
3,985,620 + CA264_17125 0.50 -0.1
3,985,818 + CA264_17125 0.64 -0.9
3,985,905 - CA264_17125 0.71 -0.2
3,985,937 - CA264_17125 0.73 -0.8
3,985,937 - CA264_17125 0.73 -0.1
3,986,174 + -0.4
3,986,175 - +0.5
3,986,208 + -1.7
3,986,208 + -0.4
3,986,208 + +0.5
3,986,209 - +1.3
3,986,213 - +0.3
3,986,213 - -0.9
3,986,213 - -0.2
3,986,287 + +1.8
3,986,287 + -0.4
3,986,299 - -0.1
3,986,311 - -0.4
3,986,311 - +0.0
3,986,320 + -0.3
3,986,321 - -0.8
3,986,351 + -0.1
3,986,351 + -0.9
3,986,352 - -0.2
3,986,427 + -0.6
3,986,482 - -0.3
3,986,509 - -0.1
3,986,539 + -0.1
3,986,578 - +0.4
3,986,578 - +0.2
3,986,622 - -0.3
3,986,623 + -0.4
3,986,624 - -1.4
3,986,624 - -0.2
3,986,740 + -0.1
3,986,741 - +0.3
3,986,741 - +0.3
3,986,741 - -0.7
3,986,756 - +0.3
3,986,795 + -0.8
3,986,797 + +1.1
3,986,797 + -0.5
3,986,798 - CA264_17130 0.10 +1.4
3,986,824 + CA264_17130 0.11 +0.5
3,986,824 + CA264_17130 0.11 +0.1
3,986,825 - CA264_17130 0.11 -0.3
3,986,825 - CA264_17130 0.11 +0.3
3,986,828 + CA264_17130 0.11 +0.1
3,986,862 - CA264_17130 0.12 -0.7
3,986,930 + CA264_17130 0.15 -1.0
3,987,030 + CA264_17130 0.18 -0.3
3,987,180 - CA264_17130 0.23 +0.3
3,987,180 - CA264_17130 0.23 +0.6
3,987,264 + CA264_17130 0.26 -1.9
3,987,264 + CA264_17130 0.26 +0.9
3,987,264 + CA264_17130 0.26 -0.1

Or see this region's nucleotide sequence