Experiment: m.b. perchlorate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_17120 and CA264_17125 are separated by 189 nucleotides CA264_17125 and CA264_17130 are separated by 195 nucleotides
CA264_17120: CA264_17120 - hypothetical protein, at 3,983,322 to 3,984,740
_17120
CA264_17125: CA264_17125 - DNA repair protein RadA, at 3,984,930 to 3,986,309
_17125
CA264_17130: CA264_17130 - histidine kinase, at 3,986,505 to 3,989,426
_17130
Position (kb)
3984
3985
3986
3987 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3984.092 kb on - strand, within CA264_17120 at 3984.095 kb on + strand, within CA264_17120 at 3984.095 kb on + strand, within CA264_17120 at 3984.096 kb on - strand, within CA264_17120 at 3984.097 kb on + strand, within CA264_17120 at 3984.097 kb on + strand, within CA264_17120 at 3984.098 kb on - strand, within CA264_17120 at 3984.179 kb on - strand, within CA264_17120 at 3984.182 kb on + strand, within CA264_17120 at 3984.183 kb on - strand, within CA264_17120 at 3984.244 kb on + strand, within CA264_17120 at 3984.244 kb on + strand, within CA264_17120 at 3984.245 kb on - strand, within CA264_17120 at 3984.245 kb on - strand, within CA264_17120 at 3984.245 kb on - strand, within CA264_17120 at 3984.333 kb on + strand, within CA264_17120 at 3984.333 kb on + strand, within CA264_17120 at 3984.371 kb on - strand, within CA264_17120 at 3984.412 kb on + strand, within CA264_17120 at 3984.412 kb on + strand, within CA264_17120 at 3984.413 kb on - strand, within CA264_17120 at 3984.538 kb on - strand, within CA264_17120 at 3984.571 kb on - strand, within CA264_17120 at 3984.571 kb on - strand, within CA264_17120 at 3984.610 kb on + strand at 3984.611 kb on - strand at 3984.752 kb on - strand at 3984.782 kb on + strand at 3984.782 kb on + strand at 3984.856 kb on + strand at 3984.882 kb on + strand at 3984.971 kb on - strand at 3985.021 kb on + strand at 3985.021 kb on + strand at 3985.022 kb on - strand at 3985.034 kb on - strand at 3985.034 kb on - strand at 3985.349 kb on - strand, within CA264_17125 at 3985.353 kb on - strand, within CA264_17125 at 3985.384 kb on - strand, within CA264_17125 at 3985.430 kb on + strand, within CA264_17125 at 3985.565 kb on - strand, within CA264_17125 at 3985.620 kb on + strand, within CA264_17125 at 3985.818 kb on + strand, within CA264_17125 at 3985.905 kb on - strand, within CA264_17125 at 3985.937 kb on - strand, within CA264_17125 at 3985.937 kb on - strand, within CA264_17125 at 3986.174 kb on + strand at 3986.175 kb on - strand at 3986.208 kb on + strand at 3986.208 kb on + strand at 3986.208 kb on + strand at 3986.209 kb on - strand at 3986.213 kb on - strand at 3986.213 kb on - strand at 3986.213 kb on - strand at 3986.287 kb on + strand at 3986.287 kb on + strand at 3986.299 kb on - strand at 3986.311 kb on - strand at 3986.311 kb on - strand at 3986.320 kb on + strand at 3986.321 kb on - strand at 3986.351 kb on + strand at 3986.351 kb on + strand at 3986.352 kb on - strand at 3986.427 kb on + strand at 3986.482 kb on - strand at 3986.509 kb on - strand at 3986.539 kb on + strand at 3986.578 kb on - strand at 3986.578 kb on - strand at 3986.622 kb on - strand at 3986.623 kb on + strand at 3986.624 kb on - strand at 3986.624 kb on - strand at 3986.740 kb on + strand at 3986.741 kb on - strand at 3986.741 kb on - strand at 3986.741 kb on - strand at 3986.756 kb on - strand at 3986.795 kb on + strand at 3986.797 kb on + strand at 3986.797 kb on + strand at 3986.798 kb on - strand, within CA264_17130 at 3986.824 kb on + strand, within CA264_17130 at 3986.824 kb on + strand, within CA264_17130 at 3986.825 kb on - strand, within CA264_17130 at 3986.825 kb on - strand, within CA264_17130 at 3986.828 kb on + strand, within CA264_17130 at 3986.862 kb on - strand, within CA264_17130 at 3986.930 kb on + strand, within CA264_17130 at 3987.030 kb on + strand, within CA264_17130 at 3987.180 kb on - strand, within CA264_17130 at 3987.180 kb on - strand, within CA264_17130 at 3987.264 kb on + strand, within CA264_17130 at 3987.264 kb on + strand, within CA264_17130 at 3987.264 kb on + strand, within CA264_17130
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM remove 3,984,092 - CA264_17120 0.54 +0.6 3,984,095 + CA264_17120 0.54 -0.1 3,984,095 + CA264_17120 0.54 +0.9 3,984,096 - CA264_17120 0.55 -0.7 3,984,097 + CA264_17120 0.55 -0.1 3,984,097 + CA264_17120 0.55 +0.9 3,984,098 - CA264_17120 0.55 -0.4 3,984,179 - CA264_17120 0.60 +0.9 3,984,182 + CA264_17120 0.61 -0.1 3,984,183 - CA264_17120 0.61 +1.0 3,984,244 + CA264_17120 0.65 +1.3 3,984,244 + CA264_17120 0.65 +0.1 3,984,245 - CA264_17120 0.65 +0.4 3,984,245 - CA264_17120 0.65 -0.5 3,984,245 - CA264_17120 0.65 -0.2 3,984,333 + CA264_17120 0.71 -0.2 3,984,333 + CA264_17120 0.71 +0.3 3,984,371 - CA264_17120 0.74 +0.2 3,984,412 + CA264_17120 0.77 +0.8 3,984,412 + CA264_17120 0.77 -0.2 3,984,413 - CA264_17120 0.77 -0.5 3,984,538 - CA264_17120 0.86 +1.5 3,984,571 - CA264_17120 0.88 -1.8 3,984,571 - CA264_17120 0.88 +0.7 3,984,610 + +1.5 3,984,611 - -0.2 3,984,752 - +1.0 3,984,782 + +0.1 3,984,782 + +0.4 3,984,856 + -0.9 3,984,882 + -0.3 3,984,971 - -0.4 3,985,021 + +0.1 3,985,021 + -0.4 3,985,022 - +0.0 3,985,034 - -0.3 3,985,034 - -0.6 3,985,349 - CA264_17125 0.30 +0.6 3,985,353 - CA264_17125 0.31 +0.6 3,985,384 - CA264_17125 0.33 -1.2 3,985,430 + CA264_17125 0.36 -0.2 3,985,565 - CA264_17125 0.46 -1.2 3,985,620 + CA264_17125 0.50 -0.1 3,985,818 + CA264_17125 0.64 -0.9 3,985,905 - CA264_17125 0.71 -0.2 3,985,937 - CA264_17125 0.73 -0.8 3,985,937 - CA264_17125 0.73 -0.1 3,986,174 + -0.4 3,986,175 - +0.5 3,986,208 + -1.7 3,986,208 + -0.4 3,986,208 + +0.5 3,986,209 - +1.3 3,986,213 - +0.3 3,986,213 - -0.9 3,986,213 - -0.2 3,986,287 + +1.8 3,986,287 + -0.4 3,986,299 - -0.1 3,986,311 - -0.4 3,986,311 - +0.0 3,986,320 + -0.3 3,986,321 - -0.8 3,986,351 + -0.1 3,986,351 + -0.9 3,986,352 - -0.2 3,986,427 + -0.6 3,986,482 - -0.3 3,986,509 - -0.1 3,986,539 + -0.1 3,986,578 - +0.4 3,986,578 - +0.2 3,986,622 - -0.3 3,986,623 + -0.4 3,986,624 - -1.4 3,986,624 - -0.2 3,986,740 + -0.1 3,986,741 - +0.3 3,986,741 - +0.3 3,986,741 - -0.7 3,986,756 - +0.3 3,986,795 + -0.8 3,986,797 + +1.1 3,986,797 + -0.5 3,986,798 - CA264_17130 0.10 +1.4 3,986,824 + CA264_17130 0.11 +0.5 3,986,824 + CA264_17130 0.11 +0.1 3,986,825 - CA264_17130 0.11 -0.3 3,986,825 - CA264_17130 0.11 +0.3 3,986,828 + CA264_17130 0.11 +0.1 3,986,862 - CA264_17130 0.12 -0.7 3,986,930 + CA264_17130 0.15 -1.0 3,987,030 + CA264_17130 0.18 -0.3 3,987,180 - CA264_17130 0.23 +0.3 3,987,180 - CA264_17130 0.23 +0.6 3,987,264 + CA264_17130 0.26 -1.9 3,987,264 + CA264_17130 0.26 +0.9 3,987,264 + CA264_17130 0.26 -0.1
Or see this region's nucleotide sequence