Experiment: m.b. perchlorate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_16430 and CA264_16435 are separated by 64 nucleotides CA264_16435 and CA264_16440 are separated by 72 nucleotides CA264_16440 and CA264_16445 are separated by 456 nucleotides
CA264_16430: CA264_16430 - TonB dependent receptor, at 3,821,084 to 3,823,462
_16430
CA264_16435: CA264_16435 - hypothetical protein, at 3,823,527 to 3,824,096
_16435
CA264_16440: CA264_16440 - hypothetical protein, at 3,824,169 to 3,824,807
_16440
CA264_16445: CA264_16445 - hypothetical protein, at 3,825,264 to 3,825,827
_16445
Position (kb)
3824
3825 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3823.172 kb on + strand, within CA264_16430 at 3823.181 kb on + strand, within CA264_16430 at 3823.182 kb on - strand, within CA264_16430 at 3823.182 kb on - strand, within CA264_16430 at 3823.182 kb on - strand, within CA264_16430 at 3823.182 kb on - strand, within CA264_16430 at 3823.182 kb on - strand, within CA264_16430 at 3823.183 kb on + strand, within CA264_16430 at 3823.183 kb on + strand, within CA264_16430 at 3823.184 kb on - strand, within CA264_16430 at 3823.184 kb on - strand, within CA264_16430 at 3823.200 kb on + strand, within CA264_16430 at 3823.200 kb on + strand, within CA264_16430 at 3823.201 kb on - strand, within CA264_16430 at 3823.201 kb on - strand, within CA264_16430 at 3823.201 kb on - strand, within CA264_16430 at 3823.201 kb on - strand, within CA264_16430 at 3823.201 kb on - strand, within CA264_16430 at 3823.202 kb on + strand, within CA264_16430 at 3823.202 kb on + strand, within CA264_16430 at 3823.202 kb on + strand, within CA264_16430 at 3823.202 kb on + strand, within CA264_16430 at 3823.203 kb on - strand, within CA264_16430 at 3823.203 kb on - strand, within CA264_16430 at 3823.203 kb on - strand, within CA264_16430 at 3823.206 kb on + strand, within CA264_16430 at 3823.222 kb on + strand, within CA264_16430 at 3823.222 kb on + strand, within CA264_16430 at 3823.222 kb on + strand, within CA264_16430 at 3823.223 kb on - strand, within CA264_16430 at 3823.223 kb on - strand, within CA264_16430 at 3823.386 kb on + strand at 3823.386 kb on + strand at 3823.386 kb on + strand at 3823.392 kb on - strand at 3823.395 kb on - strand at 3823.473 kb on - strand at 3823.497 kb on + strand at 3823.506 kb on - strand at 3823.521 kb on + strand at 3823.521 kb on + strand at 3823.521 kb on + strand at 3823.521 kb on + strand at 3823.522 kb on - strand at 3823.522 kb on - strand at 3823.522 kb on - strand at 3823.522 kb on - strand at 3823.523 kb on + strand at 3823.523 kb on + strand at 3823.523 kb on + strand at 3823.548 kb on + strand at 3823.564 kb on + strand at 3823.640 kb on - strand, within CA264_16435 at 3823.640 kb on - strand, within CA264_16435 at 3823.644 kb on - strand, within CA264_16435 at 3823.710 kb on + strand, within CA264_16435 at 3823.751 kb on + strand, within CA264_16435 at 3823.751 kb on + strand, within CA264_16435 at 3823.778 kb on + strand, within CA264_16435 at 3823.779 kb on - strand, within CA264_16435 at 3823.779 kb on - strand, within CA264_16435 at 3823.779 kb on - strand, within CA264_16435 at 3823.784 kb on + strand, within CA264_16435 at 3823.785 kb on - strand, within CA264_16435 at 3823.812 kb on - strand, within CA264_16435 at 3823.820 kb on + strand, within CA264_16435 at 3823.910 kb on + strand, within CA264_16435 at 3823.940 kb on - strand, within CA264_16435 at 3823.992 kb on - strand, within CA264_16435 at 3823.992 kb on - strand, within CA264_16435 at 3823.998 kb on - strand, within CA264_16435 at 3824.022 kb on - strand, within CA264_16435 at 3824.084 kb on + strand at 3824.084 kb on + strand at 3824.085 kb on - strand at 3824.085 kb on - strand at 3824.107 kb on + strand at 3824.108 kb on - strand at 3824.113 kb on + strand at 3824.170 kb on + strand at 3824.171 kb on - strand at 3824.269 kb on + strand, within CA264_16440 at 3824.295 kb on - strand, within CA264_16440 at 3824.391 kb on - strand, within CA264_16440 at 3824.481 kb on + strand, within CA264_16440 at 3824.758 kb on - strand at 3824.778 kb on + strand at 3824.824 kb on + strand at 3824.843 kb on - strand at 3824.879 kb on + strand at 3824.879 kb on + strand at 3824.879 kb on + strand at 3824.880 kb on - strand at 3824.907 kb on + strand at 3824.908 kb on - strand at 3824.908 kb on - strand at 3824.955 kb on - strand at 3824.970 kb on - strand at 3825.026 kb on + strand at 3825.026 kb on + strand at 3825.028 kb on + strand at 3825.028 kb on + strand at 3825.028 kb on + strand at 3825.029 kb on - strand at 3825.032 kb on + strand at 3825.032 kb on + strand at 3825.033 kb on - strand at 3825.033 kb on - strand at 3825.152 kb on - strand at 3825.249 kb on + strand at 3825.263 kb on + strand at 3825.411 kb on - strand, within CA264_16445 at 3825.411 kb on - strand, within CA264_16445 at 3825.411 kb on - strand, within CA264_16445 at 3825.429 kb on - strand, within CA264_16445 at 3825.636 kb on + strand, within CA264_16445 at 3825.637 kb on - strand, within CA264_16445 at 3825.673 kb on + strand, within CA264_16445 at 3825.722 kb on - strand, within CA264_16445
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM remove 3,823,172 + CA264_16430 0.88 -0.1 3,823,181 + CA264_16430 0.88 +0.3 3,823,182 - CA264_16430 0.88 -0.2 3,823,182 - CA264_16430 0.88 +0.1 3,823,182 - CA264_16430 0.88 +1.2 3,823,182 - CA264_16430 0.88 +0.7 3,823,182 - CA264_16430 0.88 -0.5 3,823,183 + CA264_16430 0.88 +0.8 3,823,183 + CA264_16430 0.88 +0.3 3,823,184 - CA264_16430 0.88 +0.5 3,823,184 - CA264_16430 0.88 -0.5 3,823,200 + CA264_16430 0.89 +0.0 3,823,200 + CA264_16430 0.89 -0.1 3,823,201 - CA264_16430 0.89 -0.0 3,823,201 - CA264_16430 0.89 +0.2 3,823,201 - CA264_16430 0.89 -0.4 3,823,201 - CA264_16430 0.89 -1.5 3,823,201 - CA264_16430 0.89 +0.8 3,823,202 + CA264_16430 0.89 -0.3 3,823,202 + CA264_16430 0.89 -0.6 3,823,202 + CA264_16430 0.89 -0.2 3,823,202 + CA264_16430 0.89 -0.3 3,823,203 - CA264_16430 0.89 +0.1 3,823,203 - CA264_16430 0.89 +0.7 3,823,203 - CA264_16430 0.89 -0.2 3,823,206 + CA264_16430 0.89 +0.6 3,823,222 + CA264_16430 0.90 -0.1 3,823,222 + CA264_16430 0.90 -0.1 3,823,222 + CA264_16430 0.90 -0.0 3,823,223 - CA264_16430 0.90 -0.2 3,823,223 - CA264_16430 0.90 +0.1 3,823,386 + -0.2 3,823,386 + +0.1 3,823,386 + +0.3 3,823,392 - -0.1 3,823,395 - +0.3 3,823,473 - -0.5 3,823,497 + -0.3 3,823,506 - -0.1 3,823,521 + -0.3 3,823,521 + -0.5 3,823,521 + -0.3 3,823,521 + +0.1 3,823,522 - -1.2 3,823,522 - +1.3 3,823,522 - -1.0 3,823,522 - -0.5 3,823,523 + -0.1 3,823,523 + -0.4 3,823,523 + -1.4 3,823,548 + +0.2 3,823,564 + +0.4 3,823,640 - CA264_16435 0.20 -0.4 3,823,640 - CA264_16435 0.20 -1.6 3,823,644 - CA264_16435 0.21 -1.2 3,823,710 + CA264_16435 0.32 +0.3 3,823,751 + CA264_16435 0.39 -0.0 3,823,751 + CA264_16435 0.39 -0.6 3,823,778 + CA264_16435 0.44 -1.1 3,823,779 - CA264_16435 0.44 -0.9 3,823,779 - CA264_16435 0.44 -0.1 3,823,779 - CA264_16435 0.44 +0.0 3,823,784 + CA264_16435 0.45 -0.2 3,823,785 - CA264_16435 0.45 -0.0 3,823,812 - CA264_16435 0.50 +0.7 3,823,820 + CA264_16435 0.51 +0.3 3,823,910 + CA264_16435 0.67 +0.2 3,823,940 - CA264_16435 0.72 -0.6 3,823,992 - CA264_16435 0.82 -0.3 3,823,992 - CA264_16435 0.82 -0.1 3,823,998 - CA264_16435 0.83 -0.3 3,824,022 - CA264_16435 0.87 +1.0 3,824,084 + -0.8 3,824,084 + +0.1 3,824,085 - -0.3 3,824,085 - +1.0 3,824,107 + -0.5 3,824,108 - +0.4 3,824,113 + +0.7 3,824,170 + +0.5 3,824,171 - +1.7 3,824,269 + CA264_16440 0.16 +1.3 3,824,295 - CA264_16440 0.20 +0.2 3,824,391 - CA264_16440 0.35 +2.8 3,824,481 + CA264_16440 0.49 -0.6 3,824,758 - +1.3 3,824,778 + -0.4 3,824,824 + +0.0 3,824,843 - +1.2 3,824,879 + -0.3 3,824,879 + -0.2 3,824,879 + -0.2 3,824,880 - -0.4 3,824,907 + +1.1 3,824,908 - +1.5 3,824,908 - -0.1 3,824,955 - -1.0 3,824,970 - -0.8 3,825,026 + -0.6 3,825,026 + -0.0 3,825,028 + +0.3 3,825,028 + -0.3 3,825,028 + +1.0 3,825,029 - +0.1 3,825,032 + -0.4 3,825,032 + -0.0 3,825,033 - +0.7 3,825,033 - -0.0 3,825,152 - -2.7 3,825,249 + +0.0 3,825,263 + -0.1 3,825,411 - CA264_16445 0.26 +0.4 3,825,411 - CA264_16445 0.26 -0.2 3,825,411 - CA264_16445 0.26 +1.5 3,825,429 - CA264_16445 0.29 -0.2 3,825,636 + CA264_16445 0.66 -0.9 3,825,637 - CA264_16445 0.66 -0.7 3,825,673 + CA264_16445 0.73 +0.2 3,825,722 - CA264_16445 0.81 +0.6
Or see this region's nucleotide sequence