Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13765

Experiment: m.b. perchlorate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13760 and CA264_13765 are separated by 366 nucleotidesCA264_13765 and CA264_13770 are separated by 172 nucleotides CA264_13760: CA264_13760 - succinate--CoA ligase subunit alpha, at 3,215,093 to 3,215,983 _13760 CA264_13765: CA264_13765 - DNA-binding transcriptional regulator OxyR, at 3,216,350 to 3,217,294 _13765 CA264_13770: CA264_13770 - DNA starvation/stationary phase protection protein, at 3,217,467 to 3,217,940 _13770 Position (kb) 3216 3217 3218Strain fitness (log2 ratio) -2 -1 0 1 2at 3215.972 kb on - strandat 3215.982 kb on - strandat 3215.982 kb on - strandat 3215.982 kb on - strandat 3215.995 kb on - strandat 3215.995 kb on - strandat 3216.001 kb on + strandat 3216.053 kb on - strandat 3216.053 kb on - strandat 3216.131 kb on - strandat 3216.131 kb on - strandat 3216.131 kb on - strandat 3216.131 kb on - strandat 3216.131 kb on - strandat 3216.131 kb on - strandat 3216.134 kb on + strandat 3216.192 kb on - strandat 3216.203 kb on - strandat 3216.206 kb on + strandat 3216.272 kb on + strandat 3216.272 kb on + strandat 3216.272 kb on + strandat 3216.281 kb on + strandat 3216.281 kb on + strandat 3216.288 kb on + strandat 3216.411 kb on - strandat 3216.412 kb on + strandat 3216.622 kb on + strand, within CA264_13765at 3216.622 kb on + strand, within CA264_13765at 3216.752 kb on + strand, within CA264_13765at 3216.792 kb on + strand, within CA264_13765at 3216.792 kb on + strand, within CA264_13765at 3216.792 kb on + strand, within CA264_13765at 3216.810 kb on + strand, within CA264_13765at 3216.896 kb on + strand, within CA264_13765at 3217.100 kb on + strand, within CA264_13765at 3217.102 kb on + strand, within CA264_13765at 3217.102 kb on + strand, within CA264_13765at 3217.102 kb on + strand, within CA264_13765at 3217.102 kb on + strand, within CA264_13765at 3217.103 kb on - strand, within CA264_13765at 3217.103 kb on - strand, within CA264_13765at 3217.160 kb on + strand, within CA264_13765at 3217.161 kb on - strand, within CA264_13765at 3217.268 kb on + strandat 3217.272 kb on + strandat 3217.272 kb on + strandat 3217.277 kb on + strandat 3217.277 kb on + strandat 3217.284 kb on - strandat 3217.303 kb on - strandat 3217.306 kb on - strandat 3217.309 kb on + strandat 3217.349 kb on - strandat 3217.349 kb on - strandat 3217.455 kb on - strandat 3217.493 kb on - strandat 3217.549 kb on - strand, within CA264_13770at 3217.558 kb on - strand, within CA264_13770at 3217.561 kb on - strand, within CA264_13770at 3217.622 kb on + strand, within CA264_13770at 3217.722 kb on + strand, within CA264_13770at 3217.725 kb on - strand, within CA264_13770at 3217.725 kb on - strand, within CA264_13770at 3217.933 kb on + strandat 3217.934 kb on - strandat 3217.938 kb on + strandat 3217.938 kb on + strandat 3217.939 kb on - strandat 3218.032 kb on - strandat 3218.057 kb on - strandat 3218.057 kb on - strandat 3218.057 kb on - strandat 3218.060 kb on + strandat 3218.060 kb on + strandat 3218.061 kb on - strandat 3218.061 kb on - strandat 3218.062 kb on + strandat 3218.067 kb on + strandat 3218.068 kb on - strandat 3218.078 kb on + strandat 3218.078 kb on + strandat 3218.082 kb on + strandat 3218.102 kb on + strandat 3218.136 kb on + strandat 3218.189 kb on - strandat 3218.197 kb on - strandat 3218.248 kb on - strandat 3218.293 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM
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3,215,972 - -0.5
3,215,982 - -0.5
3,215,982 - -1.1
3,215,982 - -0.2
3,215,995 - -0.5
3,215,995 - -0.4
3,216,001 + +0.1
3,216,053 - +0.7
3,216,053 - +0.2
3,216,131 - +1.4
3,216,131 - +0.4
3,216,131 - +0.1
3,216,131 - -0.3
3,216,131 - -0.2
3,216,131 - +0.4
3,216,134 + +0.1
3,216,192 - -1.1
3,216,203 - +0.2
3,216,206 + -1.0
3,216,272 + +0.2
3,216,272 + +0.7
3,216,272 + -0.1
3,216,281 + -0.2
3,216,281 + +0.9
3,216,288 + -0.8
3,216,411 - -0.5
3,216,412 + -0.4
3,216,622 + CA264_13765 0.29 -1.1
3,216,622 + CA264_13765 0.29 +1.4
3,216,752 + CA264_13765 0.43 +0.5
3,216,792 + CA264_13765 0.47 +0.4
3,216,792 + CA264_13765 0.47 -1.1
3,216,792 + CA264_13765 0.47 -0.1
3,216,810 + CA264_13765 0.49 -0.0
3,216,896 + CA264_13765 0.58 +0.2
3,217,100 + CA264_13765 0.79 +1.2
3,217,102 + CA264_13765 0.80 +0.4
3,217,102 + CA264_13765 0.80 +0.1
3,217,102 + CA264_13765 0.80 -0.5
3,217,102 + CA264_13765 0.80 -0.0
3,217,103 - CA264_13765 0.80 +0.3
3,217,103 - CA264_13765 0.80 +0.3
3,217,160 + CA264_13765 0.86 -0.7
3,217,161 - CA264_13765 0.86 -0.0
3,217,268 + +1.1
3,217,272 + -0.2
3,217,272 + +0.7
3,217,277 + +2.4
3,217,277 + +0.1
3,217,284 - -2.0
3,217,303 - +0.2
3,217,306 - +0.0
3,217,309 + -0.4
3,217,349 - +0.3
3,217,349 - -0.4
3,217,455 - +0.2
3,217,493 - +0.3
3,217,549 - CA264_13770 0.17 -1.5
3,217,558 - CA264_13770 0.19 +0.7
3,217,561 - CA264_13770 0.20 +0.4
3,217,622 + CA264_13770 0.33 +0.4
3,217,722 + CA264_13770 0.54 +0.3
3,217,725 - CA264_13770 0.54 -1.2
3,217,725 - CA264_13770 0.54 +0.3
3,217,933 + +0.4
3,217,934 - +0.4
3,217,938 + +0.6
3,217,938 + -1.2
3,217,939 - -0.5
3,218,032 - +0.0
3,218,057 - -0.4
3,218,057 - -0.2
3,218,057 - -0.2
3,218,060 + +0.4
3,218,060 + +1.7
3,218,061 - -0.4
3,218,061 - +0.1
3,218,062 + -1.2
3,218,067 + +0.6
3,218,068 - -0.2
3,218,078 + +1.1
3,218,078 + -1.4
3,218,082 + +0.4
3,218,102 + +0.8
3,218,136 + -0.9
3,218,189 - -0.8
3,218,197 - +0.5
3,218,248 - -0.7
3,218,293 - +0.9

Or see this region's nucleotide sequence