Experiment: m.b. perchlorate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08315 and CA264_08320 are separated by 412 nucleotides CA264_08320 and CA264_08325 are separated by 74 nucleotides CA264_08325 and CA264_08330 are separated by 158 nucleotides
CA264_08315: CA264_08315 - PAS sensor protein, at 1,922,114 to 1,923,667
_08315
CA264_08320: CA264_08320 - hypothetical protein, at 1,924,080 to 1,925,078
_08320
CA264_08325: CA264_08325 - SIMPL domain-containing protein, at 1,925,153 to 1,925,869
_08325
CA264_08330: CA264_08330 - hypothetical protein, at 1,926,028 to 1,926,360
_08330
Position (kb)
1924
1925
1926 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1923.227 kb on - strand, within CA264_08315 at 1923.227 kb on - strand, within CA264_08315 at 1923.232 kb on - strand, within CA264_08315 at 1923.414 kb on + strand, within CA264_08315 at 1923.488 kb on - strand, within CA264_08315 at 1923.491 kb on + strand, within CA264_08315 at 1923.572 kb on + strand at 1923.573 kb on - strand at 1923.622 kb on - strand at 1923.625 kb on + strand at 1923.625 kb on + strand at 1923.626 kb on - strand at 1923.626 kb on - strand at 1923.633 kb on - strand at 1923.764 kb on + strand at 1923.835 kb on - strand at 1923.913 kb on - strand at 1924.047 kb on + strand at 1924.047 kb on + strand at 1924.047 kb on + strand at 1924.047 kb on + strand at 1924.048 kb on - strand at 1924.048 kb on - strand at 1924.048 kb on - strand at 1924.048 kb on - strand at 1924.063 kb on + strand at 1924.064 kb on - strand at 1924.091 kb on + strand at 1924.097 kb on - strand at 1924.099 kb on - strand at 1924.160 kb on + strand at 1924.161 kb on - strand at 1924.210 kb on - strand, within CA264_08320 at 1924.212 kb on - strand, within CA264_08320 at 1924.519 kb on - strand, within CA264_08320 at 1924.586 kb on - strand, within CA264_08320 at 1924.833 kb on + strand, within CA264_08320 at 1924.838 kb on + strand, within CA264_08320 at 1924.935 kb on + strand, within CA264_08320 at 1925.116 kb on + strand at 1925.120 kb on + strand at 1925.121 kb on - strand at 1925.145 kb on + strand at 1925.145 kb on + strand at 1925.236 kb on - strand, within CA264_08325 at 1925.254 kb on + strand, within CA264_08325 at 1925.255 kb on - strand, within CA264_08325 at 1925.263 kb on + strand, within CA264_08325 at 1925.266 kb on - strand, within CA264_08325 at 1925.310 kb on + strand, within CA264_08325 at 1925.311 kb on - strand, within CA264_08325 at 1925.327 kb on - strand, within CA264_08325 at 1925.403 kb on + strand, within CA264_08325 at 1925.404 kb on - strand, within CA264_08325 at 1925.404 kb on - strand, within CA264_08325 at 1925.536 kb on - strand, within CA264_08325 at 1925.575 kb on - strand, within CA264_08325 at 1925.724 kb on - strand, within CA264_08325 at 1925.840 kb on - strand at 1925.840 kb on - strand at 1925.876 kb on - strand at 1925.887 kb on + strand at 1925.888 kb on - strand at 1925.889 kb on + strand at 1925.889 kb on + strand at 1925.895 kb on - strand at 1925.910 kb on + strand at 1925.910 kb on + strand at 1925.910 kb on + strand at 1925.923 kb on + strand at 1925.923 kb on + strand at 1925.925 kb on + strand at 1925.926 kb on - strand at 1925.927 kb on + strand at 1925.963 kb on - strand at 1926.008 kb on + strand at 1926.008 kb on + strand at 1926.008 kb on + strand at 1926.009 kb on - strand at 1926.009 kb on - strand at 1926.009 kb on - strand at 1926.030 kb on - strand at 1926.041 kb on + strand at 1926.042 kb on - strand at 1926.063 kb on - strand, within CA264_08330
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM remove 1,923,227 - CA264_08315 0.72 +0.3 1,923,227 - CA264_08315 0.72 -0.2 1,923,232 - CA264_08315 0.72 -0.8 1,923,414 + CA264_08315 0.84 +0.3 1,923,488 - CA264_08315 0.88 -0.5 1,923,491 + CA264_08315 0.89 -2.3 1,923,572 + -1.1 1,923,573 - -0.8 1,923,622 - -0.8 1,923,625 + -1.1 1,923,625 + -2.1 1,923,626 - -0.3 1,923,626 - +0.0 1,923,633 - +0.3 1,923,764 + -2.6 1,923,835 - -1.5 1,923,913 - -0.9 1,924,047 + -2.0 1,924,047 + +0.6 1,924,047 + -0.7 1,924,047 + -2.3 1,924,048 - -1.2 1,924,048 - -0.6 1,924,048 - +1.1 1,924,048 - -0.9 1,924,063 + -2.0 1,924,064 - +0.7 1,924,091 + -2.1 1,924,097 - +0.7 1,924,099 - -1.6 1,924,160 + -3.9 1,924,161 - -1.4 1,924,210 - CA264_08320 0.13 -2.8 1,924,212 - CA264_08320 0.13 -0.7 1,924,519 - CA264_08320 0.44 -0.8 1,924,586 - CA264_08320 0.51 -0.3 1,924,833 + CA264_08320 0.75 -0.2 1,924,838 + CA264_08320 0.76 -3.7 1,924,935 + CA264_08320 0.86 -3.6 1,925,116 + -0.5 1,925,120 + +0.2 1,925,121 - +0.3 1,925,145 + -0.2 1,925,145 + -0.8 1,925,236 - CA264_08325 0.12 -0.5 1,925,254 + CA264_08325 0.14 +0.2 1,925,255 - CA264_08325 0.14 +0.0 1,925,263 + CA264_08325 0.15 +0.1 1,925,266 - CA264_08325 0.16 -0.1 1,925,310 + CA264_08325 0.22 +0.7 1,925,311 - CA264_08325 0.22 +0.6 1,925,327 - CA264_08325 0.24 +0.4 1,925,403 + CA264_08325 0.35 +0.4 1,925,404 - CA264_08325 0.35 -0.7 1,925,404 - CA264_08325 0.35 +0.1 1,925,536 - CA264_08325 0.53 -0.9 1,925,575 - CA264_08325 0.59 +0.3 1,925,724 - CA264_08325 0.80 +0.2 1,925,840 - +0.4 1,925,840 - +0.0 1,925,876 - -1.0 1,925,887 + -0.5 1,925,888 - -0.3 1,925,889 + -0.2 1,925,889 + -0.2 1,925,895 - +0.0 1,925,910 + -0.1 1,925,910 + +0.0 1,925,910 + +0.9 1,925,923 + +0.0 1,925,923 + +0.5 1,925,925 + -0.8 1,925,926 - -0.7 1,925,927 + +0.0 1,925,963 - +0.6 1,926,008 + +0.1 1,926,008 + -0.2 1,926,008 + -1.0 1,926,009 - -1.3 1,926,009 - -0.8 1,926,009 - -0.2 1,926,030 - -0.4 1,926,041 + -0.9 1,926,042 - +0.6 1,926,063 - CA264_08330 0.11 +0.5
Or see this region's nucleotide sequence