Experiment: m.b. perchlorate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_06025 and CA264_06030 are separated by 157 nucleotides CA264_06030 and CA264_06035 are separated by 82 nucleotides CA264_06035 and CA264_06040 are separated by 437 nucleotides
CA264_06025: CA264_06025 - cysteine methyltransferase, at 1,406,177 to 1,407,049
_06025
CA264_06030: CA264_06030 - cell envelope biogenesis protein OmpA, at 1,407,207 to 1,408,085
_06030
CA264_06035: CA264_06035 - hypothetical protein, at 1,408,168 to 1,408,626
_06035
CA264_06040: CA264_06040 - hypothetical protein, at 1,409,064 to 1,411,847
_06040
Position (kb)
1407
1408
1409 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1406.213 kb on + strand at 1406.214 kb on - strand at 1406.342 kb on + strand, within CA264_06025 at 1406.342 kb on + strand, within CA264_06025 at 1406.513 kb on + strand, within CA264_06025 at 1406.513 kb on + strand, within CA264_06025 at 1406.514 kb on - strand, within CA264_06025 at 1406.514 kb on - strand, within CA264_06025 at 1406.515 kb on + strand, within CA264_06025 at 1406.515 kb on + strand, within CA264_06025 at 1406.515 kb on + strand, within CA264_06025 at 1406.516 kb on - strand, within CA264_06025 at 1406.543 kb on + strand, within CA264_06025 at 1406.543 kb on + strand, within CA264_06025 at 1406.543 kb on + strand, within CA264_06025 at 1406.544 kb on - strand, within CA264_06025 at 1406.544 kb on - strand, within CA264_06025 at 1406.619 kb on + strand, within CA264_06025 at 1406.783 kb on - strand, within CA264_06025 at 1406.807 kb on + strand, within CA264_06025 at 1406.808 kb on - strand, within CA264_06025 at 1406.911 kb on + strand, within CA264_06025 at 1406.914 kb on - strand, within CA264_06025 at 1407.047 kb on + strand at 1407.054 kb on + strand at 1407.055 kb on - strand at 1407.055 kb on - strand at 1407.091 kb on + strand at 1407.113 kb on - strand at 1407.117 kb on - strand at 1407.200 kb on + strand at 1407.201 kb on - strand at 1407.206 kb on + strand at 1407.206 kb on + strand at 1407.207 kb on - strand at 1407.224 kb on - strand at 1407.291 kb on + strand at 1407.291 kb on + strand at 1407.353 kb on + strand, within CA264_06030 at 1407.353 kb on + strand, within CA264_06030 at 1407.354 kb on - strand, within CA264_06030 at 1407.691 kb on + strand, within CA264_06030 at 1407.691 kb on + strand, within CA264_06030 at 1407.691 kb on + strand, within CA264_06030 at 1407.692 kb on - strand, within CA264_06030 at 1407.693 kb on + strand, within CA264_06030 at 1407.693 kb on + strand, within CA264_06030 at 1407.694 kb on - strand, within CA264_06030 at 1407.694 kb on - strand, within CA264_06030 at 1407.935 kb on - strand, within CA264_06030 at 1407.972 kb on + strand, within CA264_06030 at 1407.972 kb on + strand, within CA264_06030 at 1408.094 kb on + strand at 1408.095 kb on - strand at 1408.104 kb on - strand at 1408.169 kb on + strand at 1408.186 kb on + strand at 1408.192 kb on + strand at 1408.223 kb on - strand, within CA264_06035 at 1408.271 kb on + strand, within CA264_06035 at 1408.271 kb on + strand, within CA264_06035 at 1408.277 kb on - strand, within CA264_06035 at 1408.462 kb on + strand, within CA264_06035 at 1408.462 kb on + strand, within CA264_06035 at 1408.543 kb on + strand, within CA264_06035 at 1408.543 kb on + strand, within CA264_06035 at 1408.544 kb on - strand, within CA264_06035 at 1408.684 kb on + strand at 1408.722 kb on + strand at 1408.722 kb on + strand at 1408.723 kb on - strand at 1408.723 kb on - strand at 1408.800 kb on - strand at 1408.805 kb on + strand at 1408.829 kb on - strand at 1408.853 kb on + strand at 1408.853 kb on + strand at 1408.880 kb on - strand at 1408.939 kb on - strand at 1408.995 kb on - strand at 1409.041 kb on + strand at 1409.046 kb on + strand at 1409.046 kb on + strand at 1409.048 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM remove 1,406,213 + -0.6 1,406,214 - +1.3 1,406,342 + CA264_06025 0.19 -1.1 1,406,342 + CA264_06025 0.19 +0.7 1,406,513 + CA264_06025 0.38 +0.7 1,406,513 + CA264_06025 0.38 -0.2 1,406,514 - CA264_06025 0.39 +0.3 1,406,514 - CA264_06025 0.39 +0.2 1,406,515 + CA264_06025 0.39 +1.5 1,406,515 + CA264_06025 0.39 +0.6 1,406,515 + CA264_06025 0.39 -0.4 1,406,516 - CA264_06025 0.39 +1.6 1,406,543 + CA264_06025 0.42 -0.6 1,406,543 + CA264_06025 0.42 -0.0 1,406,543 + CA264_06025 0.42 -1.0 1,406,544 - CA264_06025 0.42 +2.2 1,406,544 - CA264_06025 0.42 +0.2 1,406,619 + CA264_06025 0.51 -1.0 1,406,783 - CA264_06025 0.69 -0.5 1,406,807 + CA264_06025 0.72 +0.2 1,406,808 - CA264_06025 0.72 -0.1 1,406,911 + CA264_06025 0.84 +0.3 1,406,914 - CA264_06025 0.84 +0.3 1,407,047 + +1.2 1,407,054 + -0.0 1,407,055 - +0.7 1,407,055 - -1.2 1,407,091 + +0.6 1,407,113 - +1.2 1,407,117 - -1.2 1,407,200 + -0.4 1,407,201 - -0.2 1,407,206 + +0.5 1,407,206 + +0.1 1,407,207 - +0.1 1,407,224 - -0.7 1,407,291 + +0.1 1,407,291 + -0.3 1,407,353 + CA264_06030 0.17 -1.7 1,407,353 + CA264_06030 0.17 -0.4 1,407,354 - CA264_06030 0.17 +0.3 1,407,691 + CA264_06030 0.55 -0.1 1,407,691 + CA264_06030 0.55 -0.7 1,407,691 + CA264_06030 0.55 -0.9 1,407,692 - CA264_06030 0.55 -0.7 1,407,693 + CA264_06030 0.55 +0.3 1,407,693 + CA264_06030 0.55 +0.0 1,407,694 - CA264_06030 0.55 -0.1 1,407,694 - CA264_06030 0.55 +0.2 1,407,935 - CA264_06030 0.83 -0.1 1,407,972 + CA264_06030 0.87 +0.4 1,407,972 + CA264_06030 0.87 -0.8 1,408,094 + -0.2 1,408,095 - -0.7 1,408,104 - +0.0 1,408,169 + +1.5 1,408,186 + +0.5 1,408,192 + -0.2 1,408,223 - CA264_06035 0.12 +0.2 1,408,271 + CA264_06035 0.22 -0.4 1,408,271 + CA264_06035 0.22 -0.9 1,408,277 - CA264_06035 0.24 +1.6 1,408,462 + CA264_06035 0.64 +0.3 1,408,462 + CA264_06035 0.64 -3.0 1,408,543 + CA264_06035 0.82 +1.0 1,408,543 + CA264_06035 0.82 -0.3 1,408,544 - CA264_06035 0.82 +0.4 1,408,684 + +0.9 1,408,722 + -1.0 1,408,722 + +0.0 1,408,723 - -0.3 1,408,723 - +0.6 1,408,800 - +0.7 1,408,805 + +0.3 1,408,829 - +0.5 1,408,853 + +1.0 1,408,853 + +0.2 1,408,880 - -1.0 1,408,939 - +0.7 1,408,995 - +0.0 1,409,041 + -1.0 1,409,046 + -0.9 1,409,046 + +0.5 1,409,048 + -0.1
Or see this region's nucleotide sequence