Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06030

Experiment: m.b. perchlorate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06025 and CA264_06030 are separated by 157 nucleotidesCA264_06030 and CA264_06035 are separated by 82 nucleotidesCA264_06035 and CA264_06040 are separated by 437 nucleotides CA264_06025: CA264_06025 - cysteine methyltransferase, at 1,406,177 to 1,407,049 _06025 CA264_06030: CA264_06030 - cell envelope biogenesis protein OmpA, at 1,407,207 to 1,408,085 _06030 CA264_06035: CA264_06035 - hypothetical protein, at 1,408,168 to 1,408,626 _06035 CA264_06040: CA264_06040 - hypothetical protein, at 1,409,064 to 1,411,847 _06040 Position (kb) 1407 1408 1409Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1406.213 kb on + strandat 1406.214 kb on - strandat 1406.342 kb on + strand, within CA264_06025at 1406.342 kb on + strand, within CA264_06025at 1406.513 kb on + strand, within CA264_06025at 1406.513 kb on + strand, within CA264_06025at 1406.514 kb on - strand, within CA264_06025at 1406.514 kb on - strand, within CA264_06025at 1406.515 kb on + strand, within CA264_06025at 1406.515 kb on + strand, within CA264_06025at 1406.515 kb on + strand, within CA264_06025at 1406.516 kb on - strand, within CA264_06025at 1406.543 kb on + strand, within CA264_06025at 1406.543 kb on + strand, within CA264_06025at 1406.543 kb on + strand, within CA264_06025at 1406.544 kb on - strand, within CA264_06025at 1406.544 kb on - strand, within CA264_06025at 1406.619 kb on + strand, within CA264_06025at 1406.783 kb on - strand, within CA264_06025at 1406.807 kb on + strand, within CA264_06025at 1406.808 kb on - strand, within CA264_06025at 1406.911 kb on + strand, within CA264_06025at 1406.914 kb on - strand, within CA264_06025at 1407.047 kb on + strandat 1407.054 kb on + strandat 1407.055 kb on - strandat 1407.055 kb on - strandat 1407.091 kb on + strandat 1407.113 kb on - strandat 1407.117 kb on - strandat 1407.200 kb on + strandat 1407.201 kb on - strandat 1407.206 kb on + strandat 1407.206 kb on + strandat 1407.207 kb on - strandat 1407.224 kb on - strandat 1407.291 kb on + strandat 1407.291 kb on + strandat 1407.353 kb on + strand, within CA264_06030at 1407.353 kb on + strand, within CA264_06030at 1407.354 kb on - strand, within CA264_06030at 1407.691 kb on + strand, within CA264_06030at 1407.691 kb on + strand, within CA264_06030at 1407.691 kb on + strand, within CA264_06030at 1407.692 kb on - strand, within CA264_06030at 1407.693 kb on + strand, within CA264_06030at 1407.693 kb on + strand, within CA264_06030at 1407.694 kb on - strand, within CA264_06030at 1407.694 kb on - strand, within CA264_06030at 1407.935 kb on - strand, within CA264_06030at 1407.972 kb on + strand, within CA264_06030at 1407.972 kb on + strand, within CA264_06030at 1408.094 kb on + strandat 1408.095 kb on - strandat 1408.104 kb on - strandat 1408.169 kb on + strandat 1408.186 kb on + strandat 1408.192 kb on + strandat 1408.223 kb on - strand, within CA264_06035at 1408.271 kb on + strand, within CA264_06035at 1408.271 kb on + strand, within CA264_06035at 1408.277 kb on - strand, within CA264_06035at 1408.462 kb on + strand, within CA264_06035at 1408.462 kb on + strand, within CA264_06035at 1408.543 kb on + strand, within CA264_06035at 1408.543 kb on + strand, within CA264_06035at 1408.544 kb on - strand, within CA264_06035at 1408.684 kb on + strandat 1408.722 kb on + strandat 1408.722 kb on + strandat 1408.723 kb on - strandat 1408.723 kb on - strandat 1408.800 kb on - strandat 1408.805 kb on + strandat 1408.829 kb on - strandat 1408.853 kb on + strandat 1408.853 kb on + strandat 1408.880 kb on - strandat 1408.939 kb on - strandat 1408.995 kb on - strandat 1409.041 kb on + strandat 1409.046 kb on + strandat 1409.046 kb on + strandat 1409.048 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM
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1,406,213 + -0.6
1,406,214 - +1.3
1,406,342 + CA264_06025 0.19 -1.1
1,406,342 + CA264_06025 0.19 +0.7
1,406,513 + CA264_06025 0.38 +0.7
1,406,513 + CA264_06025 0.38 -0.2
1,406,514 - CA264_06025 0.39 +0.3
1,406,514 - CA264_06025 0.39 +0.2
1,406,515 + CA264_06025 0.39 +1.5
1,406,515 + CA264_06025 0.39 +0.6
1,406,515 + CA264_06025 0.39 -0.4
1,406,516 - CA264_06025 0.39 +1.6
1,406,543 + CA264_06025 0.42 -0.6
1,406,543 + CA264_06025 0.42 -0.0
1,406,543 + CA264_06025 0.42 -1.0
1,406,544 - CA264_06025 0.42 +2.2
1,406,544 - CA264_06025 0.42 +0.2
1,406,619 + CA264_06025 0.51 -1.0
1,406,783 - CA264_06025 0.69 -0.5
1,406,807 + CA264_06025 0.72 +0.2
1,406,808 - CA264_06025 0.72 -0.1
1,406,911 + CA264_06025 0.84 +0.3
1,406,914 - CA264_06025 0.84 +0.3
1,407,047 + +1.2
1,407,054 + -0.0
1,407,055 - +0.7
1,407,055 - -1.2
1,407,091 + +0.6
1,407,113 - +1.2
1,407,117 - -1.2
1,407,200 + -0.4
1,407,201 - -0.2
1,407,206 + +0.5
1,407,206 + +0.1
1,407,207 - +0.1
1,407,224 - -0.7
1,407,291 + +0.1
1,407,291 + -0.3
1,407,353 + CA264_06030 0.17 -1.7
1,407,353 + CA264_06030 0.17 -0.4
1,407,354 - CA264_06030 0.17 +0.3
1,407,691 + CA264_06030 0.55 -0.1
1,407,691 + CA264_06030 0.55 -0.7
1,407,691 + CA264_06030 0.55 -0.9
1,407,692 - CA264_06030 0.55 -0.7
1,407,693 + CA264_06030 0.55 +0.3
1,407,693 + CA264_06030 0.55 +0.0
1,407,694 - CA264_06030 0.55 -0.1
1,407,694 - CA264_06030 0.55 +0.2
1,407,935 - CA264_06030 0.83 -0.1
1,407,972 + CA264_06030 0.87 +0.4
1,407,972 + CA264_06030 0.87 -0.8
1,408,094 + -0.2
1,408,095 - -0.7
1,408,104 - +0.0
1,408,169 + +1.5
1,408,186 + +0.5
1,408,192 + -0.2
1,408,223 - CA264_06035 0.12 +0.2
1,408,271 + CA264_06035 0.22 -0.4
1,408,271 + CA264_06035 0.22 -0.9
1,408,277 - CA264_06035 0.24 +1.6
1,408,462 + CA264_06035 0.64 +0.3
1,408,462 + CA264_06035 0.64 -3.0
1,408,543 + CA264_06035 0.82 +1.0
1,408,543 + CA264_06035 0.82 -0.3
1,408,544 - CA264_06035 0.82 +0.4
1,408,684 + +0.9
1,408,722 + -1.0
1,408,722 + +0.0
1,408,723 - -0.3
1,408,723 - +0.6
1,408,800 - +0.7
1,408,805 + +0.3
1,408,829 - +0.5
1,408,853 + +1.0
1,408,853 + +0.2
1,408,880 - -1.0
1,408,939 - +0.7
1,408,995 - +0.0
1,409,041 + -1.0
1,409,046 + -0.9
1,409,046 + +0.5
1,409,048 + -0.1

Or see this region's nucleotide sequence