Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04320

Experiment: m.b. perchlorate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04315 and CA264_04320 are separated by 73 nucleotidesCA264_04320 and CA264_04325 are separated by 98 nucleotides CA264_04315: CA264_04315 - hypothetical protein, at 997,602 to 998,885 _04315 CA264_04320: CA264_04320 - MFS transporter, at 998,959 to 1,000,287 _04320 CA264_04325: CA264_04325 - amidohydrolase, at 1,000,386 to 1,002,047 _04325 Position (kb) 998 999 1000 1001Strain fitness (log2 ratio) -3 -2 -1 0 1at 997.962 kb on - strand, within CA264_04315at 998.092 kb on + strand, within CA264_04315at 998.092 kb on + strand, within CA264_04315at 998.093 kb on - strand, within CA264_04315at 998.093 kb on - strand, within CA264_04315at 998.135 kb on - strand, within CA264_04315at 998.167 kb on + strand, within CA264_04315at 998.196 kb on + strand, within CA264_04315at 998.197 kb on - strand, within CA264_04315at 998.198 kb on + strand, within CA264_04315at 998.198 kb on + strand, within CA264_04315at 998.198 kb on + strand, within CA264_04315at 998.208 kb on + strand, within CA264_04315at 998.209 kb on - strand, within CA264_04315at 998.227 kb on + strand, within CA264_04315at 998.228 kb on - strand, within CA264_04315at 998.228 kb on - strand, within CA264_04315at 998.229 kb on + strand, within CA264_04315at 998.253 kb on + strand, within CA264_04315at 998.254 kb on - strand, within CA264_04315at 998.255 kb on + strand, within CA264_04315at 998.256 kb on - strand, within CA264_04315at 998.260 kb on + strand, within CA264_04315at 998.266 kb on + strand, within CA264_04315at 998.267 kb on - strand, within CA264_04315at 998.273 kb on - strand, within CA264_04315at 998.283 kb on + strand, within CA264_04315at 998.284 kb on - strand, within CA264_04315at 998.338 kb on - strand, within CA264_04315at 998.357 kb on + strand, within CA264_04315at 998.358 kb on - strand, within CA264_04315at 998.367 kb on + strand, within CA264_04315at 998.367 kb on + strand, within CA264_04315at 998.471 kb on + strand, within CA264_04315at 998.830 kb on - strandat 998.884 kb on - strandat 998.951 kb on - strandat 998.951 kb on - strandat 999.042 kb on + strandat 999.042 kb on + strandat 999.043 kb on - strandat 999.043 kb on - strandat 999.141 kb on + strand, within CA264_04320at 999.146 kb on - strand, within CA264_04320at 999.146 kb on - strand, within CA264_04320at 999.211 kb on + strand, within CA264_04320at 999.212 kb on - strand, within CA264_04320at 999.212 kb on - strand, within CA264_04320at 999.280 kb on + strand, within CA264_04320at 999.281 kb on - strand, within CA264_04320at 999.352 kb on - strand, within CA264_04320at 999.364 kb on + strand, within CA264_04320at 999.373 kb on + strand, within CA264_04320at 999.374 kb on - strand, within CA264_04320at 999.404 kb on - strand, within CA264_04320at 999.440 kb on - strand, within CA264_04320at 999.454 kb on - strand, within CA264_04320at 999.519 kb on + strand, within CA264_04320at 999.592 kb on + strand, within CA264_04320at 999.613 kb on + strand, within CA264_04320at 999.622 kb on - strand, within CA264_04320at 999.664 kb on - strand, within CA264_04320at 999.664 kb on - strand, within CA264_04320at 999.683 kb on + strand, within CA264_04320at 999.758 kb on - strand, within CA264_04320at 999.758 kb on - strand, within CA264_04320at 999.770 kb on + strand, within CA264_04320at 999.856 kb on + strand, within CA264_04320at 999.883 kb on + strand, within CA264_04320at 999.893 kb on + strand, within CA264_04320at 999.893 kb on + strand, within CA264_04320at 999.904 kb on - strand, within CA264_04320at 999.946 kb on + strand, within CA264_04320at 1000.014 kb on - strand, within CA264_04320at 1000.014 kb on - strand, within CA264_04320at 1000.036 kb on + strand, within CA264_04320at 1000.037 kb on - strand, within CA264_04320at 1000.056 kb on + strand, within CA264_04320at 1000.078 kb on + strand, within CA264_04320at 1000.079 kb on - strand, within CA264_04320at 1000.084 kb on - strand, within CA264_04320at 1000.084 kb on - strand, within CA264_04320at 1000.090 kb on + strand, within CA264_04320at 1000.090 kb on + strand, within CA264_04320at 1000.091 kb on - strand, within CA264_04320at 1000.091 kb on - strand, within CA264_04320at 1000.091 kb on - strand, within CA264_04320at 1000.135 kb on + strand, within CA264_04320at 1000.136 kb on - strand, within CA264_04320at 1000.156 kb on - strandat 1000.276 kb on - strandat 1000.296 kb on + strandat 1000.297 kb on - strandat 1000.297 kb on - strandat 1000.306 kb on - strandat 1000.306 kb on - strandat 1000.413 kb on + strandat 1000.459 kb on - strandat 1000.464 kb on + strandat 1000.486 kb on - strandat 1000.487 kb on + strandat 1000.514 kb on + strandat 1000.715 kb on - strand, within CA264_04325at 1000.792 kb on + strand, within CA264_04325at 1000.793 kb on - strand, within CA264_04325at 1000.796 kb on + strand, within CA264_04325at 1000.797 kb on - strand, within CA264_04325at 1000.841 kb on - strand, within CA264_04325at 1000.937 kb on + strand, within CA264_04325at 1000.938 kb on - strand, within CA264_04325at 1001.125 kb on + strand, within CA264_04325at 1001.125 kb on + strand, within CA264_04325at 1001.182 kb on + strand, within CA264_04325at 1001.271 kb on + strand, within CA264_04325at 1001.276 kb on + strand, within CA264_04325at 1001.283 kb on - strand, within CA264_04325

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM
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997,962 - CA264_04315 0.28 -0.1
998,092 + CA264_04315 0.38 +0.4
998,092 + CA264_04315 0.38 -0.4
998,093 - CA264_04315 0.38 +0.9
998,093 - CA264_04315 0.38 -1.0
998,135 - CA264_04315 0.42 -0.4
998,167 + CA264_04315 0.44 +0.1
998,196 + CA264_04315 0.46 +0.5
998,197 - CA264_04315 0.46 +0.7
998,198 + CA264_04315 0.46 -0.4
998,198 + CA264_04315 0.46 -0.1
998,198 + CA264_04315 0.46 -0.8
998,208 + CA264_04315 0.47 -0.2
998,209 - CA264_04315 0.47 -1.7
998,227 + CA264_04315 0.49 +0.0
998,228 - CA264_04315 0.49 -0.3
998,228 - CA264_04315 0.49 +0.0
998,229 + CA264_04315 0.49 -0.1
998,253 + CA264_04315 0.51 -0.1
998,254 - CA264_04315 0.51 +0.2
998,255 + CA264_04315 0.51 +0.7
998,256 - CA264_04315 0.51 +0.6
998,260 + CA264_04315 0.51 +0.6
998,266 + CA264_04315 0.52 -0.4
998,267 - CA264_04315 0.52 +0.2
998,273 - CA264_04315 0.52 -0.9
998,283 + CA264_04315 0.53 -0.0
998,284 - CA264_04315 0.53 +0.3
998,338 - CA264_04315 0.57 -0.3
998,357 + CA264_04315 0.59 -0.4
998,358 - CA264_04315 0.59 +0.5
998,367 + CA264_04315 0.60 +0.2
998,367 + CA264_04315 0.60 -0.2
998,471 + CA264_04315 0.68 -0.4
998,830 - -0.1
998,884 - -0.3
998,951 - +0.3
998,951 - +0.2
999,042 + +1.3
999,042 + +0.6
999,043 - -0.1
999,043 - -0.2
999,141 + CA264_04320 0.14 +1.4
999,146 - CA264_04320 0.14 +0.9
999,146 - CA264_04320 0.14 -0.3
999,211 + CA264_04320 0.19 -0.0
999,212 - CA264_04320 0.19 +1.1
999,212 - CA264_04320 0.19 -0.6
999,280 + CA264_04320 0.24 +0.0
999,281 - CA264_04320 0.24 +0.2
999,352 - CA264_04320 0.30 -0.0
999,364 + CA264_04320 0.30 +1.2
999,373 + CA264_04320 0.31 +0.5
999,374 - CA264_04320 0.31 -0.1
999,404 - CA264_04320 0.33 +1.5
999,440 - CA264_04320 0.36 -0.5
999,454 - CA264_04320 0.37 +1.3
999,519 + CA264_04320 0.42 -0.0
999,592 + CA264_04320 0.48 +0.2
999,613 + CA264_04320 0.49 -0.0
999,622 - CA264_04320 0.50 -0.5
999,664 - CA264_04320 0.53 -0.2
999,664 - CA264_04320 0.53 +0.3
999,683 + CA264_04320 0.54 -0.1
999,758 - CA264_04320 0.60 +0.0
999,758 - CA264_04320 0.60 +0.3
999,770 + CA264_04320 0.61 +1.7
999,856 + CA264_04320 0.67 -0.1
999,883 + CA264_04320 0.70 +0.2
999,893 + CA264_04320 0.70 -0.7
999,893 + CA264_04320 0.70 -0.0
999,904 - CA264_04320 0.71 -0.1
999,946 + CA264_04320 0.74 +0.5
1,000,014 - CA264_04320 0.79 +0.3
1,000,014 - CA264_04320 0.79 +0.4
1,000,036 + CA264_04320 0.81 +0.6
1,000,037 - CA264_04320 0.81 +0.1
1,000,056 + CA264_04320 0.83 +0.9
1,000,078 + CA264_04320 0.84 +0.4
1,000,079 - CA264_04320 0.84 -1.2
1,000,084 - CA264_04320 0.85 -0.3
1,000,084 - CA264_04320 0.85 -0.5
1,000,090 + CA264_04320 0.85 -0.0
1,000,090 + CA264_04320 0.85 +0.2
1,000,091 - CA264_04320 0.85 -0.3
1,000,091 - CA264_04320 0.85 -1.1
1,000,091 - CA264_04320 0.85 -2.0
1,000,135 + CA264_04320 0.88 -1.4
1,000,136 - CA264_04320 0.89 -0.5
1,000,156 - +0.2
1,000,276 - -1.3
1,000,296 + +0.6
1,000,297 - -0.1
1,000,297 - -0.7
1,000,306 - -0.3
1,000,306 - -0.4
1,000,413 + -0.4
1,000,459 - -2.8
1,000,464 + +0.4
1,000,486 - -0.5
1,000,487 + +0.1
1,000,514 + -0.1
1,000,715 - CA264_04325 0.20 +1.0
1,000,792 + CA264_04325 0.24 -0.5
1,000,793 - CA264_04325 0.24 -0.0
1,000,796 + CA264_04325 0.25 -0.7
1,000,797 - CA264_04325 0.25 -2.0
1,000,841 - CA264_04325 0.27 +0.0
1,000,937 + CA264_04325 0.33 -0.4
1,000,938 - CA264_04325 0.33 +0.2
1,001,125 + CA264_04325 0.44 -0.2
1,001,125 + CA264_04325 0.44 +0.3
1,001,182 + CA264_04325 0.48 -1.0
1,001,271 + CA264_04325 0.53 -1.3
1,001,276 + CA264_04325 0.54 -0.3
1,001,283 - CA264_04325 0.54 -0.2

Or see this region's nucleotide sequence