Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03905

Experiment: m.b. perchlorate 100 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_03900 and CA264_03905 are separated by 146 nucleotidesCA264_03905 and CA264_03910 overlap by 4 nucleotides CA264_03900: CA264_03900 - serine/threonine protein phosphatase, at 907,863 to 909,086 _03900 CA264_03905: CA264_03905 - polysaccharide deacetylase family protein, at 909,233 to 909,823 _03905 CA264_03910: CA264_03910 - family 2 glycosyl transferase, at 909,820 to 910,911 _03910 Position (kb) 909 910Strain fitness (log2 ratio) -2 -1 0 1 2at 908.256 kb on + strand, within CA264_03900at 908.256 kb on + strand, within CA264_03900at 908.360 kb on + strand, within CA264_03900at 908.400 kb on - strand, within CA264_03900at 908.400 kb on - strand, within CA264_03900at 908.400 kb on - strand, within CA264_03900at 908.444 kb on - strand, within CA264_03900at 908.454 kb on + strand, within CA264_03900at 908.454 kb on + strand, within CA264_03900at 908.454 kb on + strand, within CA264_03900at 908.455 kb on - strand, within CA264_03900at 908.455 kb on - strand, within CA264_03900at 908.648 kb on + strand, within CA264_03900at 908.706 kb on + strand, within CA264_03900at 908.706 kb on + strand, within CA264_03900at 908.707 kb on - strand, within CA264_03900at 908.707 kb on - strand, within CA264_03900at 908.733 kb on + strand, within CA264_03900at 908.734 kb on - strand, within CA264_03900at 908.777 kb on + strand, within CA264_03900at 908.780 kb on + strand, within CA264_03900at 908.780 kb on + strand, within CA264_03900at 908.794 kb on + strand, within CA264_03900at 909.027 kb on + strandat 909.081 kb on - strandat 909.085 kb on - strandat 909.090 kb on + strandat 909.091 kb on - strandat 909.106 kb on - strandat 909.106 kb on - strandat 909.174 kb on + strandat 909.174 kb on + strandat 909.175 kb on - strandat 909.246 kb on - strandat 909.281 kb on + strandat 909.281 kb on + strandat 909.282 kb on - strandat 909.282 kb on - strandat 909.286 kb on + strandat 909.287 kb on - strandat 909.347 kb on + strand, within CA264_03905at 909.347 kb on + strand, within CA264_03905at 909.348 kb on - strand, within CA264_03905at 909.454 kb on + strand, within CA264_03905at 909.454 kb on + strand, within CA264_03905at 909.491 kb on + strand, within CA264_03905at 909.650 kb on + strand, within CA264_03905at 909.762 kb on - strand, within CA264_03905at 909.819 kb on + strandat 909.828 kb on - strandat 909.838 kb on + strandat 909.861 kb on - strandat 909.912 kb on + strandat 909.913 kb on - strandat 909.936 kb on + strand, within CA264_03910at 910.105 kb on + strand, within CA264_03910at 910.106 kb on - strand, within CA264_03910at 910.106 kb on - strand, within CA264_03910at 910.107 kb on + strand, within CA264_03910at 910.107 kb on + strand, within CA264_03910at 910.108 kb on - strand, within CA264_03910at 910.108 kb on - strand, within CA264_03910at 910.108 kb on - strand, within CA264_03910at 910.348 kb on + strand, within CA264_03910at 910.348 kb on + strand, within CA264_03910at 910.353 kb on - strand, within CA264_03910at 910.436 kb on - strand, within CA264_03910at 910.436 kb on - strand, within CA264_03910at 910.463 kb on + strand, within CA264_03910at 910.470 kb on + strand, within CA264_03910at 910.471 kb on - strand, within CA264_03910at 910.538 kb on - strand, within CA264_03910at 910.575 kb on + strand, within CA264_03910at 910.582 kb on - strand, within CA264_03910at 910.582 kb on - strand, within CA264_03910at 910.640 kb on - strand, within CA264_03910at 910.640 kb on - strand, within CA264_03910at 910.672 kb on + strand, within CA264_03910at 910.704 kb on + strand, within CA264_03910at 910.705 kb on - strand, within CA264_03910at 910.740 kb on + strand, within CA264_03910at 910.741 kb on - strandat 910.763 kb on - strand, within CA264_03910at 910.807 kb on + strandat 910.807 kb on + strandat 910.808 kb on - strandat 910.813 kb on + strandat 910.814 kb on - strandat 910.814 kb on - strandat 910.814 kb on - strandat 910.814 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM
remove
908,256 + CA264_03900 0.32 -0.3
908,256 + CA264_03900 0.32 -0.5
908,360 + CA264_03900 0.41 -0.3
908,400 - CA264_03900 0.44 -0.1
908,400 - CA264_03900 0.44 -0.1
908,400 - CA264_03900 0.44 -0.2
908,444 - CA264_03900 0.47 +0.9
908,454 + CA264_03900 0.48 -1.1
908,454 + CA264_03900 0.48 +0.6
908,454 + CA264_03900 0.48 -0.4
908,455 - CA264_03900 0.48 +0.1
908,455 - CA264_03900 0.48 +0.1
908,648 + CA264_03900 0.64 -0.4
908,706 + CA264_03900 0.69 +0.3
908,706 + CA264_03900 0.69 +0.0
908,707 - CA264_03900 0.69 -0.2
908,707 - CA264_03900 0.69 +0.3
908,733 + CA264_03900 0.71 -0.2
908,734 - CA264_03900 0.71 -1.7
908,777 + CA264_03900 0.75 +1.8
908,780 + CA264_03900 0.75 -0.8
908,780 + CA264_03900 0.75 +0.4
908,794 + CA264_03900 0.76 -1.3
909,027 + -1.2
909,081 - -0.5
909,085 - -0.1
909,090 + +0.0
909,091 - +0.8
909,106 - +1.9
909,106 - +2.0
909,174 + +0.5
909,174 + -1.3
909,175 - -0.8
909,246 - -0.8
909,281 + -0.1
909,281 + -1.4
909,282 - -1.8
909,282 - -0.4
909,286 + -0.4
909,287 - -0.5
909,347 + CA264_03905 0.19 -0.5
909,347 + CA264_03905 0.19 -0.9
909,348 - CA264_03905 0.19 -0.5
909,454 + CA264_03905 0.37 -0.3
909,454 + CA264_03905 0.37 -0.1
909,491 + CA264_03905 0.44 -0.6
909,650 + CA264_03905 0.71 -0.8
909,762 - CA264_03905 0.90 -0.5
909,819 + +0.7
909,828 - -0.3
909,838 + +1.2
909,861 - +0.6
909,912 + +2.3
909,913 - -0.1
909,936 + CA264_03910 0.11 +0.8
910,105 + CA264_03910 0.26 -0.2
910,106 - CA264_03910 0.26 +0.8
910,106 - CA264_03910 0.26 +0.4
910,107 + CA264_03910 0.26 -0.6
910,107 + CA264_03910 0.26 -1.1
910,108 - CA264_03910 0.26 -0.2
910,108 - CA264_03910 0.26 -0.8
910,108 - CA264_03910 0.26 -0.8
910,348 + CA264_03910 0.48 +0.3
910,348 + CA264_03910 0.48 -0.6
910,353 - CA264_03910 0.49 -0.6
910,436 - CA264_03910 0.56 +0.3
910,436 - CA264_03910 0.56 -1.4
910,463 + CA264_03910 0.59 -0.3
910,470 + CA264_03910 0.60 -0.6
910,471 - CA264_03910 0.60 -0.4
910,538 - CA264_03910 0.66 +0.5
910,575 + CA264_03910 0.69 +0.5
910,582 - CA264_03910 0.70 -1.5
910,582 - CA264_03910 0.70 -1.3
910,640 - CA264_03910 0.75 -1.1
910,640 - CA264_03910 0.75 -2.4
910,672 + CA264_03910 0.78 -0.3
910,704 + CA264_03910 0.81 +0.6
910,705 - CA264_03910 0.81 -1.2
910,740 + CA264_03910 0.84 -0.7
910,741 - +1.3
910,763 - CA264_03910 0.86 -0.7
910,807 + +1.7
910,807 + -0.7
910,808 - -0.1
910,813 + +0.3
910,814 - +0.3
910,814 - -0.9
910,814 - -1.0
910,814 - +0.2

Or see this region's nucleotide sequence