Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03335

Experiment: m.b. perchlorate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03325 and CA264_03330 are separated by 147 nucleotidesCA264_03330 and CA264_03335 are separated by 106 nucleotidesCA264_03335 and CA264_03340 are separated by 1 nucleotidesCA264_03340 and CA264_03345 are separated by 545 nucleotides CA264_03325: CA264_03325 - hypothetical protein, at 780,388 to 780,597 _03325 CA264_03330: CA264_03330 - peptide-methionine (R)-S-oxide reductase, at 780,745 to 781,200 _03330 CA264_03335: CA264_03335 - glyoxylate/hydroxypyruvate reductase A, at 781,307 to 782,236 _03335 CA264_03340: CA264_03340 - dioxygenase, at 782,238 to 782,651 _03340 CA264_03345: CA264_03345 - hypothetical protein, at 783,197 to 784,594 _03345 Position (kb) 781 782 783Strain fitness (log2 ratio) -2 -1 0 1 2at 780.323 kb on + strandat 780.324 kb on - strandat 780.338 kb on + strandat 780.339 kb on - strandat 780.339 kb on - strandat 780.342 kb on + strandat 780.354 kb on - strandat 780.358 kb on + strandat 780.358 kb on + strandat 780.358 kb on + strandat 780.358 kb on + strandat 780.358 kb on + strandat 780.362 kb on + strandat 780.362 kb on + strandat 780.362 kb on + strandat 780.362 kb on + strandat 780.363 kb on - strandat 780.363 kb on - strandat 780.363 kb on - strandat 780.363 kb on - strandat 780.364 kb on + strandat 780.364 kb on + strandat 780.365 kb on - strandat 780.365 kb on - strandat 780.365 kb on - strandat 780.372 kb on - strandat 780.377 kb on + strandat 780.377 kb on + strandat 780.377 kb on + strandat 780.378 kb on - strandat 780.379 kb on + strandat 780.384 kb on + strandat 780.384 kb on + strandat 780.384 kb on + strandat 780.384 kb on + strandat 780.387 kb on - strandat 780.472 kb on + strand, within CA264_03325at 780.473 kb on - strand, within CA264_03325at 780.566 kb on - strand, within CA264_03325at 780.586 kb on + strandat 780.634 kb on - strandat 780.643 kb on - strandat 780.647 kb on + strandat 780.647 kb on + strandat 780.647 kb on + strandat 780.647 kb on + strandat 780.647 kb on + strandat 780.647 kb on + strandat 780.648 kb on - strandat 780.648 kb on - strandat 780.648 kb on - strandat 780.657 kb on + strandat 780.657 kb on + strandat 780.658 kb on - strandat 780.658 kb on - strandat 780.668 kb on + strandat 780.668 kb on + strandat 780.677 kb on + strandat 780.685 kb on - strandat 780.700 kb on + strandat 780.702 kb on + strandat 780.702 kb on + strandat 780.702 kb on + strandat 780.713 kb on + strandat 780.713 kb on + strandat 780.714 kb on - strandat 780.792 kb on - strand, within CA264_03330at 780.903 kb on - strand, within CA264_03330at 781.040 kb on + strand, within CA264_03330at 781.050 kb on + strand, within CA264_03330at 781.163 kb on + strandat 781.177 kb on + strandat 781.269 kb on + strandat 781.304 kb on + strandat 781.304 kb on + strandat 781.304 kb on + strandat 781.305 kb on - strandat 781.305 kb on - strandat 781.317 kb on + strandat 781.318 kb on - strandat 781.318 kb on - strandat 781.318 kb on - strandat 781.318 kb on - strandat 781.320 kb on + strandat 781.321 kb on - strandat 781.323 kb on + strandat 781.324 kb on - strandat 781.327 kb on + strandat 781.328 kb on - strandat 781.472 kb on + strand, within CA264_03335at 781.570 kb on - strand, within CA264_03335at 781.646 kb on + strand, within CA264_03335at 781.647 kb on - strand, within CA264_03335at 781.688 kb on + strand, within CA264_03335at 781.689 kb on - strand, within CA264_03335at 781.689 kb on - strand, within CA264_03335at 781.782 kb on + strand, within CA264_03335at 781.827 kb on + strand, within CA264_03335at 781.830 kb on - strand, within CA264_03335at 781.918 kb on - strand, within CA264_03335at 781.959 kb on - strand, within CA264_03335at 781.963 kb on + strand, within CA264_03335at 781.964 kb on - strand, within CA264_03335at 782.166 kb on + strandat 782.174 kb on + strandat 782.234 kb on + strandat 782.235 kb on - strandat 782.235 kb on - strandat 782.296 kb on - strand, within CA264_03340at 782.303 kb on + strand, within CA264_03340at 782.304 kb on - strand, within CA264_03340at 782.306 kb on - strand, within CA264_03340at 782.409 kb on + strand, within CA264_03340at 782.410 kb on - strand, within CA264_03340at 782.422 kb on + strand, within CA264_03340at 782.460 kb on - strand, within CA264_03340at 782.480 kb on + strand, within CA264_03340at 782.481 kb on - strand, within CA264_03340at 782.513 kb on + strand, within CA264_03340at 782.514 kb on - strand, within CA264_03340at 782.536 kb on - strand, within CA264_03340at 782.666 kb on + strandat 782.932 kb on - strandat 782.946 kb on + strandat 782.964 kb on + strandat 782.973 kb on + strandat 782.977 kb on + strandat 782.977 kb on + strandat 782.978 kb on - strandat 782.990 kb on + strandat 782.997 kb on + strandat 782.998 kb on - strandat 783.005 kb on - strandat 783.012 kb on + strandat 783.012 kb on + strandat 783.012 kb on + strandat 783.012 kb on + strandat 783.014 kb on + strandat 783.014 kb on + strandat 783.015 kb on - strandat 783.015 kb on - strandat 783.021 kb on - strandat 783.028 kb on - strandat 783.136 kb on + strandat 783.137 kb on - strandat 783.137 kb on - strandat 783.137 kb on - strandat 783.137 kb on - strandat 783.137 kb on - strandat 783.140 kb on - strandat 783.140 kb on - strandat 783.199 kb on - strandat 783.199 kb on - strandat 783.203 kb on - strandat 783.214 kb on + strandat 783.214 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM
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780,323 + -0.1
780,324 - -1.4
780,338 + -0.1
780,339 - -0.3
780,339 - -0.8
780,342 + +0.0
780,354 - -0.1
780,358 + -0.3
780,358 + -1.6
780,358 + -0.3
780,358 + -0.3
780,358 + -0.6
780,362 + -0.9
780,362 + +0.5
780,362 + -0.3
780,362 + -0.2
780,363 - -0.1
780,363 - -0.2
780,363 - -0.3
780,363 - +0.1
780,364 + +0.0
780,364 + -0.0
780,365 - -0.8
780,365 - -1.1
780,365 - -0.6
780,372 - +0.4
780,377 + -0.9
780,377 + +0.0
780,377 + -0.0
780,378 - -1.1
780,379 + -0.8
780,384 + -0.3
780,384 + -0.2
780,384 + -0.1
780,384 + +1.9
780,387 - +0.8
780,472 + CA264_03325 0.40 -1.3
780,473 - CA264_03325 0.40 -0.1
780,566 - CA264_03325 0.85 +0.8
780,586 + +0.2
780,634 - +0.6
780,643 - +0.7
780,647 + -0.8
780,647 + +0.8
780,647 + -0.2
780,647 + -0.1
780,647 + +0.6
780,647 + -2.5
780,648 - +0.1
780,648 - -0.1
780,648 - +0.6
780,657 + +0.1
780,657 + -0.1
780,658 - -0.8
780,658 - +0.2
780,668 + -1.3
780,668 + +0.2
780,677 + +0.2
780,685 - +0.4
780,700 + +0.0
780,702 + -0.2
780,702 + -0.1
780,702 + +0.8
780,713 + +0.2
780,713 + -0.3
780,714 - +0.4
780,792 - CA264_03330 0.10 -0.6
780,903 - CA264_03330 0.35 +1.0
781,040 + CA264_03330 0.65 +0.8
781,050 + CA264_03330 0.67 +0.7
781,163 + +0.9
781,177 + +0.2
781,269 + +1.5
781,304 + +0.3
781,304 + +0.5
781,304 + +0.1
781,305 - +0.7
781,305 - +1.5
781,317 + +2.4
781,318 - -0.5
781,318 - +1.4
781,318 - +0.2
781,318 - +0.5
781,320 + -0.4
781,321 - -0.9
781,323 + -0.3
781,324 - +0.1
781,327 + -0.2
781,328 - +0.5
781,472 + CA264_03335 0.18 -0.3
781,570 - CA264_03335 0.28 -0.6
781,646 + CA264_03335 0.36 +1.6
781,647 - CA264_03335 0.37 -0.0
781,688 + CA264_03335 0.41 -0.2
781,689 - CA264_03335 0.41 +0.5
781,689 - CA264_03335 0.41 -0.2
781,782 + CA264_03335 0.51 -0.1
781,827 + CA264_03335 0.56 -0.1
781,830 - CA264_03335 0.56 +0.1
781,918 - CA264_03335 0.66 -0.1
781,959 - CA264_03335 0.70 +0.9
781,963 + CA264_03335 0.71 +0.0
781,964 - CA264_03335 0.71 +0.2
782,166 + +0.9
782,174 + +0.1
782,234 + +0.4
782,235 - -0.3
782,235 - -0.5
782,296 - CA264_03340 0.14 -0.4
782,303 + CA264_03340 0.16 +0.2
782,304 - CA264_03340 0.16 -0.8
782,306 - CA264_03340 0.16 -0.2
782,409 + CA264_03340 0.41 +0.1
782,410 - CA264_03340 0.42 +0.6
782,422 + CA264_03340 0.44 +0.4
782,460 - CA264_03340 0.54 +0.3
782,480 + CA264_03340 0.58 -0.6
782,481 - CA264_03340 0.59 -0.0
782,513 + CA264_03340 0.66 +0.0
782,514 - CA264_03340 0.67 +0.4
782,536 - CA264_03340 0.72 +0.7
782,666 + -0.1
782,932 - -1.5
782,946 + -0.3
782,964 + +1.3
782,973 + +0.3
782,977 + +0.4
782,977 + -0.4
782,978 - -1.2
782,990 + -0.6
782,997 + -0.3
782,998 - +0.4
783,005 - -0.7
783,012 + -0.8
783,012 + +0.3
783,012 + -0.3
783,012 + +0.7
783,014 + +0.0
783,014 + -1.1
783,015 - +0.0
783,015 - +0.2
783,021 - -0.2
783,028 - +1.5
783,136 + -0.2
783,137 - -0.3
783,137 - +0.3
783,137 - +0.4
783,137 - -0.2
783,137 - -0.1
783,140 - -0.4
783,140 - -2.1
783,199 - +0.9
783,199 - -0.2
783,203 - +1.2
783,214 + -0.5
783,214 + +0.0

Or see this region's nucleotide sequence