Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02215

Experiment: m.b. perchlorate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02210 and CA264_02215 are separated by 146 nucleotidesCA264_02215 and CA264_02220 are separated by 345 nucleotides CA264_02210: CA264_02210 - AI-2E family transporter, at 508,310 to 509,464 _02210 CA264_02215: CA264_02215 - AAA family ATPase, at 509,611 to 510,879 _02215 CA264_02220: CA264_02220 - signal peptide peptidase SppA, at 511,225 to 512,988 _02220 Position (kb) 509 510 511Strain fitness (log2 ratio) -2 -1 0 1 2at 508.748 kb on - strand, within CA264_02210at 508.748 kb on - strand, within CA264_02210at 508.780 kb on + strand, within CA264_02210at 508.781 kb on - strand, within CA264_02210at 508.784 kb on + strand, within CA264_02210at 508.784 kb on + strand, within CA264_02210at 508.798 kb on + strand, within CA264_02210at 508.856 kb on + strand, within CA264_02210at 508.856 kb on + strand, within CA264_02210at 508.857 kb on - strand, within CA264_02210at 508.937 kb on + strand, within CA264_02210at 508.938 kb on - strand, within CA264_02210at 508.940 kb on - strand, within CA264_02210at 509.033 kb on + strand, within CA264_02210at 509.034 kb on - strand, within CA264_02210at 509.108 kb on - strand, within CA264_02210at 509.172 kb on + strand, within CA264_02210at 509.173 kb on - strand, within CA264_02210at 509.175 kb on + strand, within CA264_02210at 509.176 kb on - strand, within CA264_02210at 509.176 kb on - strand, within CA264_02210at 509.176 kb on - strand, within CA264_02210at 509.214 kb on + strand, within CA264_02210at 509.317 kb on + strand, within CA264_02210at 509.373 kb on - strandat 509.509 kb on - strandat 509.601 kb on + strandat 509.602 kb on - strandat 509.604 kb on - strandat 509.627 kb on + strandat 509.669 kb on - strandat 509.691 kb on - strandat 509.691 kb on - strandat 509.830 kb on - strand, within CA264_02215at 509.867 kb on + strand, within CA264_02215at 509.867 kb on + strand, within CA264_02215at 509.868 kb on - strand, within CA264_02215at 509.870 kb on + strand, within CA264_02215at 509.871 kb on - strand, within CA264_02215at 510.052 kb on + strand, within CA264_02215at 510.052 kb on + strand, within CA264_02215at 510.052 kb on + strand, within CA264_02215at 510.053 kb on - strand, within CA264_02215at 510.086 kb on + strand, within CA264_02215at 510.087 kb on - strand, within CA264_02215at 510.154 kb on + strand, within CA264_02215at 510.154 kb on + strand, within CA264_02215at 510.245 kb on + strand, within CA264_02215at 510.245 kb on + strand, within CA264_02215at 510.246 kb on - strand, within CA264_02215at 510.298 kb on + strand, within CA264_02215at 510.299 kb on - strand, within CA264_02215at 510.322 kb on + strand, within CA264_02215at 510.322 kb on + strand, within CA264_02215at 510.420 kb on + strand, within CA264_02215at 510.427 kb on - strand, within CA264_02215at 510.498 kb on + strand, within CA264_02215at 510.499 kb on - strand, within CA264_02215at 510.571 kb on + strand, within CA264_02215at 510.571 kb on + strand, within CA264_02215at 510.604 kb on + strand, within CA264_02215at 510.604 kb on + strand, within CA264_02215at 510.605 kb on - strand, within CA264_02215at 510.721 kb on + strand, within CA264_02215at 510.722 kb on - strand, within CA264_02215at 510.727 kb on + strand, within CA264_02215at 510.728 kb on - strand, within CA264_02215at 510.740 kb on - strand, within CA264_02215at 510.768 kb on + strandat 510.782 kb on + strandat 510.783 kb on - strandat 510.868 kb on + strandat 510.869 kb on - strandat 510.869 kb on - strandat 510.869 kb on - strandat 510.869 kb on - strandat 510.869 kb on - strandat 510.870 kb on + strandat 510.870 kb on + strandat 510.874 kb on + strandat 510.877 kb on + strandat 510.878 kb on - strandat 510.903 kb on + strandat 510.903 kb on + strandat 510.973 kb on + strandat 510.973 kb on + strandat 510.974 kb on - strandat 510.974 kb on - strandat 510.974 kb on - strandat 510.979 kb on + strandat 510.979 kb on + strandat 510.980 kb on - strandat 510.980 kb on - strandat 511.076 kb on - strandat 511.082 kb on + strandat 511.099 kb on + strandat 511.107 kb on + strandat 511.108 kb on - strandat 511.108 kb on - strandat 511.120 kb on + strandat 511.205 kb on - strandat 511.209 kb on + strandat 511.217 kb on + strandat 511.217 kb on + strandat 511.221 kb on + strandat 511.229 kb on + strandat 511.230 kb on - strandat 511.262 kb on + strandat 511.262 kb on + strandat 511.386 kb on + strandat 511.510 kb on - strand, within CA264_02220at 511.622 kb on - strand, within CA264_02220at 511.652 kb on - strand, within CA264_02220at 511.784 kb on + strand, within CA264_02220at 511.784 kb on + strand, within CA264_02220at 511.785 kb on - strand, within CA264_02220at 511.785 kb on - strand, within CA264_02220at 511.788 kb on + strand, within CA264_02220at 511.793 kb on - strand, within CA264_02220at 511.794 kb on + strand, within CA264_02220at 511.795 kb on - strand, within CA264_02220at 511.795 kb on - strand, within CA264_02220at 511.795 kb on - strand, within CA264_02220

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM
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508,748 - CA264_02210 0.38 -2.2
508,748 - CA264_02210 0.38 -0.8
508,780 + CA264_02210 0.41 +0.2
508,781 - CA264_02210 0.41 -1.6
508,784 + CA264_02210 0.41 +1.2
508,784 + CA264_02210 0.41 -0.3
508,798 + CA264_02210 0.42 +1.6
508,856 + CA264_02210 0.47 -1.0
508,856 + CA264_02210 0.47 +0.4
508,857 - CA264_02210 0.47 +0.8
508,937 + CA264_02210 0.54 +0.3
508,938 - CA264_02210 0.54 +1.0
508,940 - CA264_02210 0.55 -0.1
509,033 + CA264_02210 0.63 +0.2
509,034 - CA264_02210 0.63 -1.2
509,108 - CA264_02210 0.69 -0.6
509,172 + CA264_02210 0.75 -0.1
509,173 - CA264_02210 0.75 -0.1
509,175 + CA264_02210 0.75 +0.6
509,176 - CA264_02210 0.75 +0.2
509,176 - CA264_02210 0.75 -1.0
509,176 - CA264_02210 0.75 +0.5
509,214 + CA264_02210 0.78 -0.2
509,317 + CA264_02210 0.87 +0.9
509,373 - -0.5
509,509 - -0.3
509,601 + +0.2
509,602 - +0.3
509,604 - -0.9
509,627 + +0.3
509,669 - +0.3
509,691 - +0.4
509,691 - +0.3
509,830 - CA264_02215 0.17 +0.1
509,867 + CA264_02215 0.20 -0.6
509,867 + CA264_02215 0.20 +0.1
509,868 - CA264_02215 0.20 +0.1
509,870 + CA264_02215 0.20 -0.3
509,871 - CA264_02215 0.20 +0.8
510,052 + CA264_02215 0.35 +0.4
510,052 + CA264_02215 0.35 +0.6
510,052 + CA264_02215 0.35 -0.2
510,053 - CA264_02215 0.35 -0.5
510,086 + CA264_02215 0.37 +0.2
510,087 - CA264_02215 0.38 -0.2
510,154 + CA264_02215 0.43 +0.0
510,154 + CA264_02215 0.43 +0.5
510,245 + CA264_02215 0.50 +0.8
510,245 + CA264_02215 0.50 -0.0
510,246 - CA264_02215 0.50 +0.0
510,298 + CA264_02215 0.54 +0.2
510,299 - CA264_02215 0.54 +0.1
510,322 + CA264_02215 0.56 -0.1
510,322 + CA264_02215 0.56 +1.0
510,420 + CA264_02215 0.64 +0.5
510,427 - CA264_02215 0.64 +0.3
510,498 + CA264_02215 0.70 +0.7
510,499 - CA264_02215 0.70 +0.2
510,571 + CA264_02215 0.76 -0.1
510,571 + CA264_02215 0.76 +0.2
510,604 + CA264_02215 0.78 -0.2
510,604 + CA264_02215 0.78 +1.1
510,605 - CA264_02215 0.78 +0.3
510,721 + CA264_02215 0.87 -0.6
510,722 - CA264_02215 0.88 -1.2
510,727 + CA264_02215 0.88 +0.2
510,728 - CA264_02215 0.88 +2.2
510,740 - CA264_02215 0.89 +0.1
510,768 + -1.1
510,782 + +1.0
510,783 - -0.5
510,868 + -0.3
510,869 - -0.0
510,869 - +0.4
510,869 - -0.3
510,869 - +0.2
510,869 - +0.2
510,870 + +0.6
510,870 + -0.5
510,874 + +0.2
510,877 + +1.1
510,878 - -0.7
510,903 + +0.5
510,903 + -0.2
510,973 + -0.0
510,973 + -0.3
510,974 - +1.3
510,974 - +0.4
510,974 - +0.3
510,979 + +0.2
510,979 + +0.7
510,980 - -0.2
510,980 - +0.4
511,076 - -0.0
511,082 + +0.1
511,099 + +0.3
511,107 + -0.5
511,108 - +0.2
511,108 - +0.2
511,120 + -0.2
511,205 - +0.3
511,209 + +0.0
511,217 + +0.5
511,217 + +1.4
511,221 + -0.3
511,229 + -0.5
511,230 - -0.1
511,262 + -0.4
511,262 + -0.6
511,386 + -0.8
511,510 - CA264_02220 0.16 -1.3
511,622 - CA264_02220 0.23 -0.6
511,652 - CA264_02220 0.24 -1.3
511,784 + CA264_02220 0.32 +0.0
511,784 + CA264_02220 0.32 +0.7
511,785 - CA264_02220 0.32 -0.1
511,785 - CA264_02220 0.32 -0.6
511,788 + CA264_02220 0.32 +0.6
511,793 - CA264_02220 0.32 -0.9
511,794 + CA264_02220 0.32 +0.1
511,795 - CA264_02220 0.32 -0.4
511,795 - CA264_02220 0.32 -0.3
511,795 - CA264_02220 0.32 -1.1

Or see this region's nucleotide sequence