Strain Fitness in Bosea sp. OAE506 around ABIE41_RS21195

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
4,356,168	+		ABIE41_RS21190	0.34	-0.4
4,356,168	+		ABIE41_RS21190	0.34	-0.7
4,356,169	-		ABIE41_RS21190	0.34	-0.2
4,356,186	+		ABIE41_RS21190	0.36	-0.7
4,356,186	+		ABIE41_RS21190	0.36	+0.7
4,356,187	-		ABIE41_RS21190	0.36	+0.3
4,356,372	+		ABIE41_RS21190	0.54	-1.8
4,356,376	-		ABIE41_RS21190	0.54	+0.4
4,356,376	-		ABIE41_RS21190	0.54	+0.7
4,356,478	-		ABIE41_RS21190	0.64	+1.9
4,356,478	-		ABIE41_RS21190	0.64	+0.4
4,356,700	-		ABIE41_RS21190	0.85	-0.1
4,356,799	+				-0.0
4,356,822	+				-0.0
4,356,823	-				-0.3
4,356,918	+				-0.1
4,356,918	+				+0.2
4,356,918	+				+0.3
4,357,015	+				-1.9
4,357,016	-				-0.1
4,357,016	-				-0.3
4,357,098	+				-0.1
4,357,237	+		ABIE41_RS21195	0.13	-0.4
4,357,237	+		ABIE41_RS21195	0.13	-0.8
4,357,238	-		ABIE41_RS21195	0.13	+1.5
4,357,238	-		ABIE41_RS21195	0.13	+0.9
4,357,390	+		ABIE41_RS21195	0.27	-0.1
4,357,391	-		ABIE41_RS21195	0.27	+0.2
4,357,391	-		ABIE41_RS21195	0.27	+0.1
4,357,393	+		ABIE41_RS21195	0.27	+0.1
4,357,393	+		ABIE41_RS21195	0.27	-0.4
4,357,393	+		ABIE41_RS21195	0.27	-0.0
4,357,393	+		ABIE41_RS21195	0.27	-1.2
4,357,394	-		ABIE41_RS21195	0.27	-1.6
4,357,394	-		ABIE41_RS21195	0.27	+0.9
4,357,394	-		ABIE41_RS21195	0.27	+0.9
4,357,394	-		ABIE41_RS21195	0.27	-0.2
4,357,394	-		ABIE41_RS21195	0.27	+0.5
4,357,396	+		ABIE41_RS21195	0.27	+0.8
4,357,396	+		ABIE41_RS21195	0.27	+0.1
4,357,396	+		ABIE41_RS21195	0.27	+0.3
4,357,396	+		ABIE41_RS21195	0.27	-2.0
4,357,396	+		ABIE41_RS21195	0.27	-0.8
4,357,397	-		ABIE41_RS21195	0.27	-0.2
4,357,397	-		ABIE41_RS21195	0.27	-0.1
4,357,397	-		ABIE41_RS21195	0.27	-0.0
4,357,397	-		ABIE41_RS21195	0.27	+0.8
4,357,397	-		ABIE41_RS21195	0.27	-1.1
4,357,397	-		ABIE41_RS21195	0.27	+0.7
4,357,397	-		ABIE41_RS21195	0.27	-0.7
4,357,477	+		ABIE41_RS21195	0.35	-0.7
4,357,531	+		ABIE41_RS21195	0.40	+1.2
4,357,531	+		ABIE41_RS21195	0.40	-0.8
4,357,531	+		ABIE41_RS21195	0.40	-0.1
4,357,531	+		ABIE41_RS21195	0.40	-1.4
4,357,531	+		ABIE41_RS21195	0.40	-0.3
4,357,532	-		ABIE41_RS21195	0.40	-0.7
4,357,699	+		ABIE41_RS21195	0.55	+0.1
4,357,699	+		ABIE41_RS21195	0.55	+0.0
4,357,699	+		ABIE41_RS21195	0.55	-1.7
4,357,700	-		ABIE41_RS21195	0.55	+0.4
4,357,700	-		ABIE41_RS21195	0.55	-0.3
4,357,792	+		ABIE41_RS21195	0.64	+0.3
4,357,793	-		ABIE41_RS21195	0.64	+0.7
4,357,795	+		ABIE41_RS21195	0.64	+0.1
4,357,795	+		ABIE41_RS21195	0.64	-0.7
4,357,796	-		ABIE41_RS21195	0.64	-0.3
4,357,796	-		ABIE41_RS21195	0.64	-0.7
4,357,798	+		ABIE41_RS21195	0.64	-0.1
4,357,799	-		ABIE41_RS21195	0.64	+0.1
4,357,799	-		ABIE41_RS21195	0.64	+0.4
4,357,799	-		ABIE41_RS21195	0.64	+0.3
4,357,876	+		ABIE41_RS21195	0.72	+0.2
4,357,876	+		ABIE41_RS21195	0.72	-0.4
4,357,876	+		ABIE41_RS21195	0.72	-0.3
4,357,876	+		ABIE41_RS21195	0.72	-0.1
4,357,877	-		ABIE41_RS21195	0.72	+0.3
4,357,906	+		ABIE41_RS21195	0.74	+0.1
4,357,906	+		ABIE41_RS21195	0.74	-0.1
4,357,933	+		ABIE41_RS21195	0.77	-0.4
4,357,934	-		ABIE41_RS21195	0.77	-0.4
4,358,044	+		ABIE41_RS21195	0.87	+0.6
4,358,045	-		ABIE41_RS21195	0.87	-0.1
4,358,119	+				+0.9
4,358,120	-				-0.1
4,358,120	-				-0.0
4,358,120	-				+0.3
4,358,120	-				-0.8
4,358,595	+		ABIE41_RS21200	0.13	-0.8
4,358,596	-		ABIE41_RS21200	0.13	+0.5
4,358,596	-		ABIE41_RS21200	0.13	+1.0
4,358,596	-		ABIE41_RS21200	0.13	+0.7
4,358,596	-		ABIE41_RS21200	0.13	-0.2
4,358,596	-		ABIE41_RS21200	0.13	+0.1
4,358,748	+		ABIE41_RS21200	0.27	-2.1
4,358,751	+		ABIE41_RS21200	0.27	-1.2
4,358,751	+		ABIE41_RS21200	0.27	-0.2
4,358,751	+		ABIE41_RS21200	0.27	-0.2
4,358,751	+		ABIE41_RS21200	0.27	+0.7
4,358,751	+		ABIE41_RS21200	0.27	+1.6
4,358,752	-		ABIE41_RS21200	0.27	-0.1
4,358,754	+		ABIE41_RS21200	0.27	+0.1
4,358,754	+		ABIE41_RS21200	0.27	+0.1
4,358,755	-		ABIE41_RS21200	0.27	-0.0
4,358,755	-		ABIE41_RS21200	0.27	-0.0
4,358,755	-		ABIE41_RS21200	0.27	-1.6
4,358,755	-		ABIE41_RS21200	0.27	-0.4
4,358,835	+		ABIE41_RS21200	0.35	+0.2
4,358,835	+		ABIE41_RS21200	0.35	-0.5
4,358,835	+		ABIE41_RS21200	0.35	+0.4
4,358,836	-		ABIE41_RS21200	0.35	+0.7
4,358,836	-		ABIE41_RS21200	0.35	+1.4
4,358,837	-		ABIE41_RS21200	0.35	+0.3
4,358,889	+		ABIE41_RS21200	0.39	-1.2
4,358,889	+		ABIE41_RS21200	0.39	-0.1
4,358,889	+		ABIE41_RS21200	0.39	-0.9
4,358,890	-		ABIE41_RS21200	0.40	+0.6
4,358,890	-		ABIE41_RS21200	0.40	+0.2
4,359,057	+		ABIE41_RS21200	0.55	+0.7
4,359,057	+		ABIE41_RS21200	0.55	+0.8
4,359,057	+		ABIE41_RS21200	0.55	+0.4
4,359,058	-		ABIE41_RS21200	0.55	-0.7
4,359,058	-		ABIE41_RS21200	0.55	+0.3
4,359,058	-		ABIE41_RS21200	0.55	-0.1
4,359,058	-		ABIE41_RS21200	0.55	-0.4
4,359,150	+		ABIE41_RS21200	0.63	-0.3
4,359,150	+		ABIE41_RS21200	0.63	+0.3
4,359,151	-		ABIE41_RS21200	0.63	-0.7
4,359,151	-		ABIE41_RS21200	0.63	-0.8
4,359,151	-		ABIE41_RS21200	0.63	-0.7
4,359,151	-		ABIE41_RS21200	0.63	+0.1
4,359,151	-		ABIE41_RS21200	0.63	-0.3
4,359,151	-		ABIE41_RS21200	0.63	-0.3
4,359,151	-		ABIE41_RS21200	0.63	+0.5
4,359,153	+		ABIE41_RS21200	0.64	+0.7