Strain Fitness in Bosea sp. OAE506 around ABIE41_RS20470

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS20465 and ABIE41_RS20470 are separated by 296 nucleotidesABIE41_RS20470 and ABIE41_RS20475 are separated by 76 nucleotides ABIE41_RS20465: ABIE41_RS20465 - phosphotransferase, at 4,206,273 to 4,207,301 _RS20465 ABIE41_RS20470: ABIE41_RS20470 - MFS transporter, at 4,207,598 to 4,208,944 _RS20470 ABIE41_RS20475: ABIE41_RS20475 - ROK family protein, at 4,209,021 to 4,210,241 _RS20475 Position (kb) 4207 4208 4209Strain fitness (log2 ratio) -1 0 1 2at 4207.198 kb on + strand, within ABIE41_RS20465at 4207.198 kb on + strand, within ABIE41_RS20465at 4207.198 kb on + strand, within ABIE41_RS20465at 4207.198 kb on + strand, within ABIE41_RS20465at 4207.198 kb on + strand, within ABIE41_RS20465at 4207.199 kb on - strandat 4207.199 kb on - strandat 4207.199 kb on - strandat 4207.199 kb on - strandat 4207.282 kb on + strandat 4207.282 kb on + strandat 4207.476 kb on + strandat 4207.626 kb on - strandat 4207.626 kb on - strandat 4207.667 kb on - strandat 4207.769 kb on + strand, within ABIE41_RS20470at 4207.769 kb on + strand, within ABIE41_RS20470at 4207.770 kb on - strand, within ABIE41_RS20470at 4207.770 kb on - strand, within ABIE41_RS20470at 4207.770 kb on - strand, within ABIE41_RS20470at 4207.770 kb on - strand, within ABIE41_RS20470at 4207.901 kb on + strand, within ABIE41_RS20470at 4207.901 kb on + strand, within ABIE41_RS20470at 4207.901 kb on + strand, within ABIE41_RS20470at 4207.901 kb on + strand, within ABIE41_RS20470at 4207.901 kb on + strand, within ABIE41_RS20470at 4207.901 kb on + strand, within ABIE41_RS20470at 4207.902 kb on - strand, within ABIE41_RS20470at 4207.902 kb on - strand, within ABIE41_RS20470at 4207.902 kb on - strand, within ABIE41_RS20470at 4207.902 kb on - strand, within ABIE41_RS20470at 4207.994 kb on + strand, within ABIE41_RS20470at 4207.996 kb on + strand, within ABIE41_RS20470at 4207.996 kb on + strand, within ABIE41_RS20470at 4207.996 kb on + strand, within ABIE41_RS20470at 4207.996 kb on + strand, within ABIE41_RS20470at 4207.997 kb on - strand, within ABIE41_RS20470at 4207.997 kb on - strand, within ABIE41_RS20470at 4207.997 kb on - strand, within ABIE41_RS20470at 4208.028 kb on - strand, within ABIE41_RS20470at 4208.087 kb on + strand, within ABIE41_RS20470at 4208.087 kb on + strand, within ABIE41_RS20470at 4208.088 kb on - strand, within ABIE41_RS20470at 4208.088 kb on - strand, within ABIE41_RS20470at 4208.088 kb on - strand, within ABIE41_RS20470at 4208.088 kb on - strand, within ABIE41_RS20470at 4208.088 kb on - strand, within ABIE41_RS20470at 4208.195 kb on + strand, within ABIE41_RS20470at 4208.225 kb on + strand, within ABIE41_RS20470at 4208.226 kb on - strand, within ABIE41_RS20470at 4208.305 kb on + strand, within ABIE41_RS20470at 4208.418 kb on + strand, within ABIE41_RS20470at 4208.419 kb on - strand, within ABIE41_RS20470at 4208.576 kb on + strand, within ABIE41_RS20470at 4208.577 kb on - strand, within ABIE41_RS20470at 4208.577 kb on - strand, within ABIE41_RS20470at 4208.693 kb on + strand, within ABIE41_RS20470at 4208.693 kb on + strand, within ABIE41_RS20470at 4208.694 kb on - strand, within ABIE41_RS20470at 4208.964 kb on + strandat 4208.965 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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4,207,198 + ABIE41_RS20465 0.90 +0.7
4,207,198 + ABIE41_RS20465 0.90 +0.2
4,207,198 + ABIE41_RS20465 0.90 -0.6
4,207,198 + ABIE41_RS20465 0.90 +0.1
4,207,198 + ABIE41_RS20465 0.90 -0.6
4,207,199 - +0.8
4,207,199 - -0.6
4,207,199 - -0.6
4,207,199 - -0.4
4,207,282 + +1.6
4,207,282 + -0.0
4,207,476 + -0.1
4,207,626 - +0.2
4,207,626 - -1.5
4,207,667 - +0.2
4,207,769 + ABIE41_RS20470 0.13 -0.0
4,207,769 + ABIE41_RS20470 0.13 -0.5
4,207,770 - ABIE41_RS20470 0.13 -0.1
4,207,770 - ABIE41_RS20470 0.13 +0.2
4,207,770 - ABIE41_RS20470 0.13 -0.6
4,207,770 - ABIE41_RS20470 0.13 +0.1
4,207,901 + ABIE41_RS20470 0.22 -0.7
4,207,901 + ABIE41_RS20470 0.22 -0.3
4,207,901 + ABIE41_RS20470 0.22 -0.4
4,207,901 + ABIE41_RS20470 0.22 +0.1
4,207,901 + ABIE41_RS20470 0.22 +0.9
4,207,901 + ABIE41_RS20470 0.22 +0.9
4,207,902 - ABIE41_RS20470 0.23 +0.7
4,207,902 - ABIE41_RS20470 0.23 -0.2
4,207,902 - ABIE41_RS20470 0.23 +0.5
4,207,902 - ABIE41_RS20470 0.23 +0.4
4,207,994 + ABIE41_RS20470 0.29 +1.9
4,207,996 + ABIE41_RS20470 0.30 +0.1
4,207,996 + ABIE41_RS20470 0.30 +0.3
4,207,996 + ABIE41_RS20470 0.30 -0.5
4,207,996 + ABIE41_RS20470 0.30 +0.5
4,207,997 - ABIE41_RS20470 0.30 -1.4
4,207,997 - ABIE41_RS20470 0.30 +0.3
4,207,997 - ABIE41_RS20470 0.30 -0.3
4,208,028 - ABIE41_RS20470 0.32 -0.6
4,208,087 + ABIE41_RS20470 0.36 -0.2
4,208,087 + ABIE41_RS20470 0.36 -1.4
4,208,088 - ABIE41_RS20470 0.36 -0.3
4,208,088 - ABIE41_RS20470 0.36 +0.2
4,208,088 - ABIE41_RS20470 0.36 -0.2
4,208,088 - ABIE41_RS20470 0.36 +0.7
4,208,088 - ABIE41_RS20470 0.36 -0.4
4,208,195 + ABIE41_RS20470 0.44 -0.2
4,208,225 + ABIE41_RS20470 0.47 -0.6
4,208,226 - ABIE41_RS20470 0.47 +0.4
4,208,305 + ABIE41_RS20470 0.52 +0.7
4,208,418 + ABIE41_RS20470 0.61 +0.4
4,208,419 - ABIE41_RS20470 0.61 +0.5
4,208,576 + ABIE41_RS20470 0.73 +0.4
4,208,577 - ABIE41_RS20470 0.73 -0.6
4,208,577 - ABIE41_RS20470 0.73 -0.1
4,208,693 + ABIE41_RS20470 0.81 -0.1
4,208,693 + ABIE41_RS20470 0.81 -0.1
4,208,694 - ABIE41_RS20470 0.81 +0.9
4,208,964 + -0.1
4,208,965 - -1.4

Or see this region's nucleotide sequence