Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS08805 and ABIE41_RS08810 are separated by 208 nucleotides ABIE41_RS08810 and ABIE41_RS08815 are separated by 87 nucleotides ABIE41_RS08815 and ABIE41_RS08820 are separated by 31 nucleotides
ABIE41_RS08805: ABIE41_RS08805 - hypothetical protein, at 1,824,109 to 1,824,342
_RS08805
ABIE41_RS08810: ABIE41_RS08810 - hypothetical protein, at 1,824,551 to 1,824,814
_RS08810
ABIE41_RS08815: ABIE41_RS08815 - RbsD/FucU domain-containing protein, at 1,824,902 to 1,825,357
_RS08815
ABIE41_RS08820: ABIE41_RS08820 - amidohydrolase family protein, at 1,825,389 to 1,826,237
_RS08820
Position (kb)
1824
1825 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1823.665 kb on - strand at 1824.498 kb on - strand at 1824.514 kb on + strand at 1824.515 kb on - strand at 1824.951 kb on + strand, within ABIE41_RS08815 at 1824.952 kb on - strand, within ABIE41_RS08815 at 1824.952 kb on - strand, within ABIE41_RS08815 at 1825.005 kb on + strand, within ABIE41_RS08815 at 1825.005 kb on + strand, within ABIE41_RS08815 at 1825.005 kb on + strand, within ABIE41_RS08815 at 1825.005 kb on + strand, within ABIE41_RS08815 at 1825.006 kb on - strand, within ABIE41_RS08815 at 1825.006 kb on - strand, within ABIE41_RS08815 at 1825.006 kb on - strand, within ABIE41_RS08815 at 1825.414 kb on + strand at 1825.415 kb on - strand at 1825.415 kb on - strand at 1825.415 kb on - strand at 1825.415 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 1,823,665 - +2.4 1,824,498 - -0.4 1,824,514 + -0.8 1,824,515 - +0.3 1,824,951 + ABIE41_RS08815 0.11 -0.9 1,824,952 - ABIE41_RS08815 0.11 +3.4 1,824,952 - ABIE41_RS08815 0.11 -0.3 1,825,005 + ABIE41_RS08815 0.23 -0.7 1,825,005 + ABIE41_RS08815 0.23 +0.5 1,825,005 + ABIE41_RS08815 0.23 -0.9 1,825,005 + ABIE41_RS08815 0.23 -1.3 1,825,006 - ABIE41_RS08815 0.23 +0.3 1,825,006 - ABIE41_RS08815 0.23 -0.4 1,825,006 - ABIE41_RS08815 0.23 +0.8 1,825,414 + -0.2 1,825,415 - -0.1 1,825,415 - +0.3 1,825,415 - +1.4 1,825,415 - -0.5
Or see this region's nucleotide sequence