Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS23185

Experiment: Glycolic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS23180 and ABIE40_RS23185 are separated by 9 nucleotidesABIE40_RS23185 and ABIE40_RS23190 are separated by 100 nucleotidesABIE40_RS23190 and ABIE40_RS23195 are separated by 98 nucleotides ABIE40_RS23180: ABIE40_RS23180 - acetyl-CoA C-acyltransferase, at 784,785 to 785,972 _RS23180 ABIE40_RS23185: ABIE40_RS23185 - acyl-CoA dehydrogenase family protein, at 785,982 to 787,109 _RS23185 ABIE40_RS23190: ABIE40_RS23190 - FCD domain-containing protein, at 787,210 to 787,899 _RS23190 ABIE40_RS23195: ABIE40_RS23195 - isocitrate/isopropylmalate family dehydrogenase, at 787,998 to 789,068 _RS23195 Position (kb) 785 786 787 788Strain fitness (log2 ratio) -2 -1 0 1 2at 785.022 kb on + strand, within ABIE40_RS23180at 785.023 kb on - strand, within ABIE40_RS23180at 785.161 kb on - strand, within ABIE40_RS23180at 785.161 kb on - strand, within ABIE40_RS23180at 785.247 kb on + strand, within ABIE40_RS23180at 785.247 kb on + strand, within ABIE40_RS23180at 785.247 kb on + strand, within ABIE40_RS23180at 785.247 kb on + strand, within ABIE40_RS23180at 785.248 kb on - strand, within ABIE40_RS23180at 785.248 kb on - strand, within ABIE40_RS23180at 785.248 kb on - strand, within ABIE40_RS23180at 785.248 kb on - strand, within ABIE40_RS23180at 785.298 kb on + strand, within ABIE40_RS23180at 785.299 kb on - strand, within ABIE40_RS23180at 785.328 kb on + strand, within ABIE40_RS23180at 785.328 kb on + strand, within ABIE40_RS23180at 785.328 kb on + strand, within ABIE40_RS23180at 785.329 kb on - strand, within ABIE40_RS23180at 785.329 kb on - strand, within ABIE40_RS23180at 785.398 kb on + strand, within ABIE40_RS23180at 785.398 kb on + strand, within ABIE40_RS23180at 785.398 kb on + strand, within ABIE40_RS23180at 785.398 kb on + strand, within ABIE40_RS23180at 785.399 kb on - strand, within ABIE40_RS23180at 785.399 kb on - strand, within ABIE40_RS23180at 785.399 kb on - strand, within ABIE40_RS23180at 785.399 kb on - strand, within ABIE40_RS23180at 785.538 kb on - strand, within ABIE40_RS23180at 785.617 kb on + strand, within ABIE40_RS23180at 785.618 kb on - strand, within ABIE40_RS23180at 785.657 kb on + strand, within ABIE40_RS23180at 785.658 kb on - strand, within ABIE40_RS23180at 785.658 kb on - strand, within ABIE40_RS23180at 785.762 kb on + strand, within ABIE40_RS23180at 785.762 kb on + strand, within ABIE40_RS23180at 785.807 kb on + strand, within ABIE40_RS23180at 785.807 kb on + strand, within ABIE40_RS23180at 785.808 kb on - strand, within ABIE40_RS23180at 785.808 kb on - strand, within ABIE40_RS23180at 785.896 kb on - strandat 785.896 kb on - strandat 785.896 kb on - strandat 786.150 kb on + strand, within ABIE40_RS23185at 786.150 kb on + strand, within ABIE40_RS23185at 786.150 kb on + strand, within ABIE40_RS23185at 786.151 kb on - strand, within ABIE40_RS23185at 786.180 kb on + strand, within ABIE40_RS23185at 786.181 kb on - strand, within ABIE40_RS23185at 786.417 kb on + strand, within ABIE40_RS23185at 786.417 kb on + strand, within ABIE40_RS23185at 786.417 kb on + strand, within ABIE40_RS23185at 786.417 kb on + strand, within ABIE40_RS23185at 786.417 kb on + strand, within ABIE40_RS23185at 786.418 kb on - strand, within ABIE40_RS23185at 786.418 kb on - strand, within ABIE40_RS23185at 786.418 kb on - strand, within ABIE40_RS23185at 786.418 kb on - strand, within ABIE40_RS23185at 786.418 kb on - strand, within ABIE40_RS23185at 786.599 kb on + strand, within ABIE40_RS23185at 786.599 kb on + strand, within ABIE40_RS23185at 786.600 kb on - strand, within ABIE40_RS23185at 786.766 kb on - strand, within ABIE40_RS23185at 786.996 kb on + strand, within ABIE40_RS23185at 786.996 kb on + strand, within ABIE40_RS23185at 787.002 kb on + strandat 787.002 kb on + strandat 787.002 kb on + strandat 787.002 kb on + strandat 787.002 kb on + strandat 787.002 kb on + strandat 787.002 kb on + strandat 787.002 kb on + strandat 787.002 kb on + strandat 787.003 kb on - strandat 787.003 kb on - strandat 787.003 kb on - strandat 787.003 kb on - strandat 787.003 kb on - strandat 787.033 kb on - strandat 787.059 kb on + strandat 787.059 kb on + strandat 787.059 kb on + strandat 787.059 kb on + strandat 787.060 kb on - strandat 787.060 kb on - strandat 787.060 kb on - strandat 787.060 kb on - strandat 787.060 kb on - strandat 787.060 kb on - strandat 787.078 kb on + strandat 787.078 kb on + strandat 787.079 kb on - strandat 787.167 kb on + strandat 787.168 kb on - strandat 787.168 kb on - strandat 787.170 kb on + strandat 787.170 kb on + strandat 787.170 kb on + strandat 787.170 kb on + strandat 787.170 kb on + strandat 787.171 kb on - strandat 787.171 kb on - strandat 787.171 kb on - strandat 787.171 kb on - strandat 787.171 kb on - strandat 787.617 kb on + strand, within ABIE40_RS23190at 787.617 kb on + strand, within ABIE40_RS23190at 787.617 kb on + strand, within ABIE40_RS23190at 787.617 kb on + strand, within ABIE40_RS23190at 787.617 kb on + strand, within ABIE40_RS23190at 787.617 kb on + strand, within ABIE40_RS23190at 787.618 kb on - strand, within ABIE40_RS23190at 787.618 kb on - strand, within ABIE40_RS23190at 787.618 kb on - strand, within ABIE40_RS23190at 787.618 kb on - strand, within ABIE40_RS23190at 787.618 kb on - strand, within ABIE40_RS23190at 787.618 kb on - strand, within ABIE40_RS23190at 787.618 kb on - strand, within ABIE40_RS23190at 787.618 kb on - strand, within ABIE40_RS23190at 787.618 kb on - strand, within ABIE40_RS23190at 787.618 kb on - strand, within ABIE40_RS23190at 787.621 kb on + strand, within ABIE40_RS23190at 787.621 kb on + strand, within ABIE40_RS23190at 787.621 kb on + strand, within ABIE40_RS23190at 787.621 kb on + strand, within ABIE40_RS23190at 787.621 kb on + strand, within ABIE40_RS23190at 787.622 kb on - strand, within ABIE40_RS23190at 787.622 kb on - strand, within ABIE40_RS23190at 787.622 kb on - strand, within ABIE40_RS23190at 787.622 kb on - strand, within ABIE40_RS23190at 787.622 kb on - strand, within ABIE40_RS23190at 787.622 kb on - strand, within ABIE40_RS23190at 787.622 kb on - strand, within ABIE40_RS23190at 787.622 kb on - strand, within ABIE40_RS23190at 787.622 kb on - strand, within ABIE40_RS23190at 787.622 kb on - strand, within ABIE40_RS23190at 787.693 kb on + strand, within ABIE40_RS23190at 787.693 kb on + strand, within ABIE40_RS23190at 787.693 kb on + strand, within ABIE40_RS23190at 787.694 kb on - strand, within ABIE40_RS23190at 787.694 kb on - strand, within ABIE40_RS23190at 787.694 kb on - strand, within ABIE40_RS23190at 787.694 kb on - strand, within ABIE40_RS23190at 787.719 kb on + strand, within ABIE40_RS23190at 787.719 kb on + strand, within ABIE40_RS23190at 787.720 kb on - strand, within ABIE40_RS23190at 787.845 kb on + strandat 787.857 kb on + strandat 787.858 kb on - strandat 787.901 kb on + strandat 787.902 kb on - strandat 787.902 kb on - strandat 787.952 kb on + strandat 788.047 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycolic Acid (C)
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785,022 + ABIE40_RS23180 0.20 +0.5
785,023 - ABIE40_RS23180 0.20 -0.6
785,161 - ABIE40_RS23180 0.32 -0.5
785,161 - ABIE40_RS23180 0.32 -0.9
785,247 + ABIE40_RS23180 0.39 +0.3
785,247 + ABIE40_RS23180 0.39 -1.3
785,247 + ABIE40_RS23180 0.39 -1.2
785,247 + ABIE40_RS23180 0.39 -0.3
785,248 - ABIE40_RS23180 0.39 +1.3
785,248 - ABIE40_RS23180 0.39 +0.6
785,248 - ABIE40_RS23180 0.39 -0.7
785,248 - ABIE40_RS23180 0.39 +0.1
785,298 + ABIE40_RS23180 0.43 +1.6
785,299 - ABIE40_RS23180 0.43 -0.9
785,328 + ABIE40_RS23180 0.46 +0.4
785,328 + ABIE40_RS23180 0.46 +1.1
785,328 + ABIE40_RS23180 0.46 -1.1
785,329 - ABIE40_RS23180 0.46 +0.1
785,329 - ABIE40_RS23180 0.46 +0.2
785,398 + ABIE40_RS23180 0.52 -0.4
785,398 + ABIE40_RS23180 0.52 -0.4
785,398 + ABIE40_RS23180 0.52 -0.5
785,398 + ABIE40_RS23180 0.52 +0.5
785,399 - ABIE40_RS23180 0.52 +1.0
785,399 - ABIE40_RS23180 0.52 -0.7
785,399 - ABIE40_RS23180 0.52 -0.9
785,399 - ABIE40_RS23180 0.52 -0.3
785,538 - ABIE40_RS23180 0.63 +0.3
785,617 + ABIE40_RS23180 0.70 -0.3
785,618 - ABIE40_RS23180 0.70 +1.5
785,657 + ABIE40_RS23180 0.73 +0.1
785,658 - ABIE40_RS23180 0.73 -0.7
785,658 - ABIE40_RS23180 0.73 -1.4
785,762 + ABIE40_RS23180 0.82 -1.2
785,762 + ABIE40_RS23180 0.82 +1.6
785,807 + ABIE40_RS23180 0.86 -1.5
785,807 + ABIE40_RS23180 0.86 +0.8
785,808 - ABIE40_RS23180 0.86 -0.3
785,808 - ABIE40_RS23180 0.86 -1.3
785,896 - +1.2
785,896 - +0.1
785,896 - -0.4
786,150 + ABIE40_RS23185 0.15 -1.1
786,150 + ABIE40_RS23185 0.15 -2.2
786,150 + ABIE40_RS23185 0.15 -0.4
786,151 - ABIE40_RS23185 0.15 +0.6
786,180 + ABIE40_RS23185 0.18 +1.0
786,181 - ABIE40_RS23185 0.18 -0.7
786,417 + ABIE40_RS23185 0.39 -1.6
786,417 + ABIE40_RS23185 0.39 -0.3
786,417 + ABIE40_RS23185 0.39 +0.2
786,417 + ABIE40_RS23185 0.39 +1.7
786,417 + ABIE40_RS23185 0.39 -0.4
786,418 - ABIE40_RS23185 0.39 +0.1
786,418 - ABIE40_RS23185 0.39 -0.5
786,418 - ABIE40_RS23185 0.39 +0.7
786,418 - ABIE40_RS23185 0.39 -1.4
786,418 - ABIE40_RS23185 0.39 +1.1
786,599 + ABIE40_RS23185 0.55 -0.5
786,599 + ABIE40_RS23185 0.55 -0.1
786,600 - ABIE40_RS23185 0.55 +0.1
786,766 - ABIE40_RS23185 0.70 +0.6
786,996 + ABIE40_RS23185 0.90 -1.2
786,996 + ABIE40_RS23185 0.90 -0.5
787,002 + -1.1
787,002 + -0.4
787,002 + +0.4
787,002 + -0.3
787,002 + -0.5
787,002 + +0.8
787,002 + -1.3
787,002 + -1.4
787,002 + +0.5
787,003 - -0.3
787,003 - -1.4
787,003 - +0.3
787,003 - +0.4
787,003 - +1.6
787,033 - +1.3
787,059 + +0.3
787,059 + -1.4
787,059 + -0.1
787,059 + +0.1
787,060 - +0.7
787,060 - -0.5
787,060 - +0.1
787,060 - -0.7
787,060 - -2.2
787,060 - +0.2
787,078 + -0.4
787,078 + -0.1
787,079 - +0.1
787,167 + +2.6
787,168 - -0.1
787,168 - +0.1
787,170 + -0.7
787,170 + -0.5
787,170 + +0.1
787,170 + -0.7
787,170 + +1.0
787,171 - -0.8
787,171 - +2.0
787,171 - +0.0
787,171 - +1.5
787,171 - -0.5
787,617 + ABIE40_RS23190 0.59 -0.0
787,617 + ABIE40_RS23190 0.59 +0.5
787,617 + ABIE40_RS23190 0.59 -0.7
787,617 + ABIE40_RS23190 0.59 +1.3
787,617 + ABIE40_RS23190 0.59 +0.5
787,617 + ABIE40_RS23190 0.59 +0.4
787,618 - ABIE40_RS23190 0.59 -0.3
787,618 - ABIE40_RS23190 0.59 -1.1
787,618 - ABIE40_RS23190 0.59 -0.4
787,618 - ABIE40_RS23190 0.59 +0.8
787,618 - ABIE40_RS23190 0.59 +0.4
787,618 - ABIE40_RS23190 0.59 -1.0
787,618 - ABIE40_RS23190 0.59 -0.1
787,618 - ABIE40_RS23190 0.59 -0.1
787,618 - ABIE40_RS23190 0.59 +0.9
787,618 - ABIE40_RS23190 0.59 +1.5
787,621 + ABIE40_RS23190 0.60 -0.5
787,621 + ABIE40_RS23190 0.60 +0.2
787,621 + ABIE40_RS23190 0.60 -0.9
787,621 + ABIE40_RS23190 0.60 +0.4
787,621 + ABIE40_RS23190 0.60 +2.1
787,622 - ABIE40_RS23190 0.60 +0.0
787,622 - ABIE40_RS23190 0.60 -2.7
787,622 - ABIE40_RS23190 0.60 -0.4
787,622 - ABIE40_RS23190 0.60 -2.3
787,622 - ABIE40_RS23190 0.60 -0.1
787,622 - ABIE40_RS23190 0.60 +0.8
787,622 - ABIE40_RS23190 0.60 +1.7
787,622 - ABIE40_RS23190 0.60 +0.2
787,622 - ABIE40_RS23190 0.60 -1.2
787,622 - ABIE40_RS23190 0.60 -1.1
787,693 + ABIE40_RS23190 0.70 -0.5
787,693 + ABIE40_RS23190 0.70 +1.3
787,693 + ABIE40_RS23190 0.70 +0.5
787,694 - ABIE40_RS23190 0.70 +0.2
787,694 - ABIE40_RS23190 0.70 +1.0
787,694 - ABIE40_RS23190 0.70 -0.6
787,694 - ABIE40_RS23190 0.70 -0.9
787,719 + ABIE40_RS23190 0.74 -0.6
787,719 + ABIE40_RS23190 0.74 +0.5
787,720 - ABIE40_RS23190 0.74 +0.4
787,845 + +2.1
787,857 + +1.5
787,858 - +0.4
787,901 + +0.1
787,902 - +0.3
787,902 - -0.6
787,952 + +0.3
788,047 + -0.1

Or see this region's nucleotide sequence