Experiment: Glycolic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03355 and ABIE40_RS03360 are separated by 1 nucleotides ABIE40_RS03360 and ABIE40_RS03365 overlap by 4 nucleotides ABIE40_RS03365 and ABIE40_RS03370 are separated by 30 nucleotides ABIE40_RS03370 and ABIE40_RS03375 overlap by 4 nucleotides
ABIE40_RS03355: ABIE40_RS03355 - ABC transporter permease subunit, at 669,234 to 670,124
_RS03355
ABIE40_RS03360: ABIE40_RS03360 - ABC transporter ATP-binding protein, at 670,126 to 670,965
_RS03360
ABIE40_RS03365: ABIE40_RS03365 - dipeptide ABC transporter ATP-binding protein, at 670,962 to 671,795
_RS03365
ABIE40_RS03370: ABIE40_RS03370 - gluconokinase, at 671,826 to 672,359
_RS03370
ABIE40_RS03375: ABIE40_RS03375 - YeeE/YedE family protein, at 672,356 to 673,576
_RS03375
Position (kb) 670
671
672 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 670.295 kb on + strand, within ABIE40_RS03360 at 670.295 kb on + strand, within ABIE40_RS03360 at 670.543 kb on - strand, within ABIE40_RS03360 at 670.807 kb on + strand, within ABIE40_RS03360 at 670.807 kb on + strand, within ABIE40_RS03360 at 670.807 kb on + strand, within ABIE40_RS03360 at 670.807 kb on + strand, within ABIE40_RS03360 at 670.808 kb on - strand, within ABIE40_RS03360 at 670.808 kb on - strand, within ABIE40_RS03360 at 670.808 kb on - strand, within ABIE40_RS03360 at 670.808 kb on - strand, within ABIE40_RS03360 at 670.808 kb on - strand, within ABIE40_RS03360 at 670.870 kb on + strand, within ABIE40_RS03360 at 670.870 kb on + strand, within ABIE40_RS03360 at 670.870 kb on + strand, within ABIE40_RS03360 at 670.870 kb on + strand, within ABIE40_RS03360 at 670.870 kb on + strand, within ABIE40_RS03360 at 670.870 kb on + strand, within ABIE40_RS03360 at 670.872 kb on + strand, within ABIE40_RS03360 at 670.872 kb on + strand, within ABIE40_RS03360 at 670.872 kb on + strand, within ABIE40_RS03360 at 670.872 kb on + strand, within ABIE40_RS03360 at 670.872 kb on + strand, within ABIE40_RS03360 at 670.873 kb on - strand, within ABIE40_RS03360 at 670.873 kb on - strand, within ABIE40_RS03360 at 670.873 kb on - strand, within ABIE40_RS03360 at 670.873 kb on - strand, within ABIE40_RS03360 at 670.873 kb on - strand, within ABIE40_RS03360 at 670.989 kb on - strand at 670.989 kb on - strand at 670.989 kb on - strand at 671.001 kb on + strand at 671.002 kb on - strand at 671.002 kb on - strand at 671.004 kb on + strand at 671.004 kb on + strand at 671.004 kb on + strand at 671.004 kb on + strand at 671.004 kb on + strand at 671.004 kb on + strand at 671.005 kb on - strand at 671.005 kb on - strand at 671.005 kb on - strand at 671.005 kb on - strand at 671.005 kb on - strand at 671.005 kb on - strand at 671.239 kb on + strand, within ABIE40_RS03365 at 671.239 kb on + strand, within ABIE40_RS03365 at 671.239 kb on + strand, within ABIE40_RS03365 at 671.239 kb on + strand, within ABIE40_RS03365 at 671.239 kb on + strand, within ABIE40_RS03365 at 671.262 kb on + strand, within ABIE40_RS03365 at 671.262 kb on + strand, within ABIE40_RS03365 at 671.262 kb on + strand, within ABIE40_RS03365 at 671.263 kb on - strand, within ABIE40_RS03365 at 671.330 kb on + strand, within ABIE40_RS03365 at 671.330 kb on + strand, within ABIE40_RS03365 at 671.409 kb on + strand, within ABIE40_RS03365 at 671.580 kb on + strand, within ABIE40_RS03365 at 671.580 kb on + strand, within ABIE40_RS03365 at 671.580 kb on + strand, within ABIE40_RS03365 at 671.580 kb on + strand, within ABIE40_RS03365 at 671.581 kb on - strand, within ABIE40_RS03365 at 671.581 kb on - strand, within ABIE40_RS03365 at 671.581 kb on - strand, within ABIE40_RS03365 at 671.581 kb on - strand, within ABIE40_RS03365 at 671.581 kb on - strand, within ABIE40_RS03365 at 671.581 kb on - strand, within ABIE40_RS03365 at 671.581 kb on - strand, within ABIE40_RS03365 at 671.616 kb on + strand, within ABIE40_RS03365 at 671.617 kb on - strand, within ABIE40_RS03365 at 671.617 kb on - strand, within ABIE40_RS03365 at 671.617 kb on - strand, within ABIE40_RS03365 at 671.643 kb on + strand, within ABIE40_RS03365 at 671.643 kb on + strand, within ABIE40_RS03365 at 671.643 kb on + strand, within ABIE40_RS03365 at 671.643 kb on + strand, within ABIE40_RS03365 at 671.644 kb on - strand, within ABIE40_RS03365 at 671.644 kb on - strand, within ABIE40_RS03365 at 671.644 kb on - strand, within ABIE40_RS03365 at 671.644 kb on - strand, within ABIE40_RS03365 at 671.664 kb on + strand, within ABIE40_RS03365 at 671.706 kb on + strand, within ABIE40_RS03365 at 671.706 kb on + strand, within ABIE40_RS03365 at 671.706 kb on + strand, within ABIE40_RS03365 at 671.706 kb on + strand, within ABIE40_RS03365 at 671.706 kb on + strand, within ABIE40_RS03365 at 671.706 kb on + strand, within ABIE40_RS03365 at 671.706 kb on + strand, within ABIE40_RS03365 at 671.706 kb on + strand, within ABIE40_RS03365 at 671.706 kb on + strand, within ABIE40_RS03365 at 671.706 kb on + strand, within ABIE40_RS03365 at 671.707 kb on - strand, within ABIE40_RS03365 at 671.707 kb on - strand, within ABIE40_RS03365 at 671.707 kb on - strand, within ABIE40_RS03365 at 671.707 kb on - strand, within ABIE40_RS03365 at 671.707 kb on - strand, within ABIE40_RS03365 at 671.707 kb on - strand, within ABIE40_RS03365 at 671.707 kb on - strand, within ABIE40_RS03365 at 671.707 kb on - strand, within ABIE40_RS03365 at 671.708 kb on + strand, within ABIE40_RS03365 at 671.708 kb on + strand, within ABIE40_RS03365 at 671.708 kb on + strand, within ABIE40_RS03365 at 671.709 kb on - strand, within ABIE40_RS03365 at 671.709 kb on - strand, within ABIE40_RS03365 at 671.709 kb on - strand, within ABIE40_RS03365 at 671.709 kb on - strand, within ABIE40_RS03365 at 671.750 kb on + strand at 671.793 kb on + strand at 672.153 kb on + strand, within ABIE40_RS03370 at 672.153 kb on + strand, within ABIE40_RS03370 at 672.154 kb on - strand, within ABIE40_RS03370 at 672.154 kb on - strand, within ABIE40_RS03370 at 672.154 kb on - strand, within ABIE40_RS03370 at 672.300 kb on - strand, within ABIE40_RS03370 at 672.358 kb on - strand at 672.425 kb on - strand at 672.456 kb on + strand at 672.456 kb on + strand at 672.456 kb on + strand at 672.456 kb on + strand at 672.457 kb on - strand at 672.457 kb on - strand at 672.492 kb on + strand, within ABIE40_RS03375 at 672.503 kb on - strand, within ABIE40_RS03375 at 672.668 kb on - strand, within ABIE40_RS03375 at 672.720 kb on + strand, within ABIE40_RS03375 at 672.721 kb on - strand, within ABIE40_RS03375
Per-strain Table
Position Strand Gene LocusTag Fraction Glycolic Acid (C) remove 670,295 + ABIE40_RS03360 0.20 -0.1 670,295 + ABIE40_RS03360 0.20 +0.6 670,543 - ABIE40_RS03360 0.50 +0.9 670,807 + ABIE40_RS03360 0.81 -1.1 670,807 + ABIE40_RS03360 0.81 +1.2 670,807 + ABIE40_RS03360 0.81 -0.0 670,807 + ABIE40_RS03360 0.81 +1.3 670,808 - ABIE40_RS03360 0.81 +0.2 670,808 - ABIE40_RS03360 0.81 +0.3 670,808 - ABIE40_RS03360 0.81 +0.2 670,808 - ABIE40_RS03360 0.81 +2.2 670,808 - ABIE40_RS03360 0.81 +1.2 670,870 + ABIE40_RS03360 0.89 +0.3 670,870 + ABIE40_RS03360 0.89 -0.8 670,870 + ABIE40_RS03360 0.89 +1.2 670,870 + ABIE40_RS03360 0.89 +0.0 670,870 + ABIE40_RS03360 0.89 -0.9 670,870 + ABIE40_RS03360 0.89 +0.6 670,872 + ABIE40_RS03360 0.89 +0.2 670,872 + ABIE40_RS03360 0.89 +1.6 670,872 + ABIE40_RS03360 0.89 +1.1 670,872 + ABIE40_RS03360 0.89 -1.2 670,872 + ABIE40_RS03360 0.89 -0.2 670,873 - ABIE40_RS03360 0.89 +0.6 670,873 - ABIE40_RS03360 0.89 -1.1 670,873 - ABIE40_RS03360 0.89 -1.4 670,873 - ABIE40_RS03360 0.89 -0.8 670,873 - ABIE40_RS03360 0.89 -0.8 670,989 - +0.3 670,989 - +0.4 670,989 - -0.1 671,001 + -0.3 671,002 - -2.1 671,002 - -1.4 671,004 + -0.5 671,004 + -0.4 671,004 + -0.0 671,004 + -0.8 671,004 + -2.8 671,004 + +0.6 671,005 - +1.4 671,005 - +0.8 671,005 - -0.1 671,005 - -0.6 671,005 - -0.3 671,005 - -2.0 671,239 + ABIE40_RS03365 0.33 +0.0 671,239 + ABIE40_RS03365 0.33 -0.3 671,239 + ABIE40_RS03365 0.33 +0.8 671,239 + ABIE40_RS03365 0.33 -1.5 671,239 + ABIE40_RS03365 0.33 -0.6 671,262 + ABIE40_RS03365 0.36 -1.3 671,262 + ABIE40_RS03365 0.36 -0.8 671,262 + ABIE40_RS03365 0.36 -0.6 671,263 - ABIE40_RS03365 0.36 +0.6 671,330 + ABIE40_RS03365 0.44 -0.5 671,330 + ABIE40_RS03365 0.44 +0.1 671,409 + ABIE40_RS03365 0.54 -1.3 671,580 + ABIE40_RS03365 0.74 -0.2 671,580 + ABIE40_RS03365 0.74 -0.4 671,580 + ABIE40_RS03365 0.74 -0.0 671,580 + ABIE40_RS03365 0.74 -0.3 671,581 - ABIE40_RS03365 0.74 -0.9 671,581 - ABIE40_RS03365 0.74 -0.1 671,581 - ABIE40_RS03365 0.74 +0.0 671,581 - ABIE40_RS03365 0.74 +0.1 671,581 - ABIE40_RS03365 0.74 -0.1 671,581 - ABIE40_RS03365 0.74 +0.2 671,581 - ABIE40_RS03365 0.74 +0.2 671,616 + ABIE40_RS03365 0.78 +0.8 671,617 - ABIE40_RS03365 0.79 +0.4 671,617 - ABIE40_RS03365 0.79 +0.5 671,617 - ABIE40_RS03365 0.79 +0.0 671,643 + ABIE40_RS03365 0.82 +0.3 671,643 + ABIE40_RS03365 0.82 +0.6 671,643 + ABIE40_RS03365 0.82 +0.7 671,643 + ABIE40_RS03365 0.82 -0.8 671,644 - ABIE40_RS03365 0.82 -1.3 671,644 - ABIE40_RS03365 0.82 -0.3 671,644 - ABIE40_RS03365 0.82 +1.2 671,644 - ABIE40_RS03365 0.82 -0.6 671,664 + ABIE40_RS03365 0.84 +2.9 671,706 + ABIE40_RS03365 0.89 -0.9 671,706 + ABIE40_RS03365 0.89 -2.7 671,706 + ABIE40_RS03365 0.89 -0.1 671,706 + ABIE40_RS03365 0.89 -1.4 671,706 + ABIE40_RS03365 0.89 -0.5 671,706 + ABIE40_RS03365 0.89 -0.3 671,706 + ABIE40_RS03365 0.89 +0.9 671,706 + ABIE40_RS03365 0.89 -0.0 671,706 + ABIE40_RS03365 0.89 -1.6 671,706 + ABIE40_RS03365 0.89 -0.2 671,707 - ABIE40_RS03365 0.89 +0.0 671,707 - ABIE40_RS03365 0.89 -1.0 671,707 - ABIE40_RS03365 0.89 +3.8 671,707 - ABIE40_RS03365 0.89 -0.4 671,707 - ABIE40_RS03365 0.89 +0.3 671,707 - ABIE40_RS03365 0.89 -0.2 671,707 - ABIE40_RS03365 0.89 -0.2 671,707 - ABIE40_RS03365 0.89 +0.7 671,708 + ABIE40_RS03365 0.89 +0.3 671,708 + ABIE40_RS03365 0.89 -0.4 671,708 + ABIE40_RS03365 0.89 -0.0 671,709 - ABIE40_RS03365 0.90 +0.5 671,709 - ABIE40_RS03365 0.90 -0.7 671,709 - ABIE40_RS03365 0.90 -0.1 671,709 - ABIE40_RS03365 0.90 +0.3 671,750 + +2.2 671,793 + +0.1 672,153 + ABIE40_RS03370 0.61 +0.4 672,153 + ABIE40_RS03370 0.61 +0.8 672,154 - ABIE40_RS03370 0.61 -0.0 672,154 - ABIE40_RS03370 0.61 -2.2 672,154 - ABIE40_RS03370 0.61 +1.0 672,300 - ABIE40_RS03370 0.89 -0.7 672,358 - -0.5 672,425 - -0.8 672,456 + +1.5 672,456 + -0.4 672,456 + -2.3 672,456 + +0.5 672,457 - -0.4 672,457 - -0.7 672,492 + ABIE40_RS03375 0.11 +0.4 672,503 - ABIE40_RS03375 0.12 +0.8 672,668 - ABIE40_RS03375 0.26 +2.2 672,720 + ABIE40_RS03375 0.30 +0.6 672,721 - ABIE40_RS03375 0.30 +0.2
Or see this region's nucleotide sequence