Experiment: L-tyrosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS29375 and ABID97_RS29380 are separated by 47 nucleotides ABID97_RS29380 and ABID97_RS29385 are separated by 67 nucleotides ABID97_RS29385 and ABID97_RS29390 are separated by 10 nucleotides ABID97_RS29390 and ABID97_RS29395 overlap by 1 nucleotides
ABID97_RS29375: ABID97_RS29375 - VOC family protein, at 800,503 to 801,063
_RS29375
ABID97_RS29380: ABID97_RS29380 - fumarylacetoacetate hydrolase family protein, at 801,111 to 801,974
_RS29380
ABID97_RS29385: ABID97_RS29385 - tripartite tricarboxylate transporter substrate binding protein, at 802,042 to 803,013
_RS29385
ABID97_RS29390: ABID97_RS29390 - amino acid synthesis family protein, at 803,024 to 803,602
_RS29390
ABID97_RS29395: ABID97_RS29395 - zinc-dependent alcohol dehydrogenase family protein, at 803,602 to 804,624
_RS29395
Position (kb) 802
803
804 Strain fitness (log2 ratio) -1
0
1
2 at 801.127 kb on - strand at 801.241 kb on - strand, within ABID97_RS29380 at 801.354 kb on + strand, within ABID97_RS29380 at 801.580 kb on - strand, within ABID97_RS29380 at 801.589 kb on - strand, within ABID97_RS29380 at 802.100 kb on + strand at 802.409 kb on - strand, within ABID97_RS29385 at 802.409 kb on - strand, within ABID97_RS29385 at 803.258 kb on + strand, within ABID97_RS29390 at 803.259 kb on - strand, within ABID97_RS29390 at 803.427 kb on - strand, within ABID97_RS29390 at 803.427 kb on - strand, within ABID97_RS29390 at 803.441 kb on + strand, within ABID97_RS29390 at 803.768 kb on - strand, within ABID97_RS29395 at 803.768 kb on - strand, within ABID97_RS29395
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (C) remove 801,127 - -0.2 801,241 - ABID97_RS29380 0.15 -1.3 801,354 + ABID97_RS29380 0.28 +1.8 801,580 - ABID97_RS29380 0.54 +0.1 801,589 - ABID97_RS29380 0.55 +0.1 802,100 + -0.1 802,409 - ABID97_RS29385 0.38 -1.3 802,409 - ABID97_RS29385 0.38 +0.2 803,258 + ABID97_RS29390 0.40 +0.5 803,259 - ABID97_RS29390 0.41 +0.1 803,427 - ABID97_RS29390 0.70 -0.1 803,427 - ABID97_RS29390 0.70 +0.3 803,441 + ABID97_RS29390 0.72 +0.6 803,768 - ABID97_RS29395 0.16 +0.5 803,768 - ABID97_RS29395 0.16 -1.0
Or see this region's nucleotide sequence