Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22305

Experiment: L-tyrosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS22300 and ABID97_RS22305 are separated by 72 nucleotidesABID97_RS22305 and ABID97_RS22310 overlap by 1 nucleotides ABID97_RS22300: ABID97_RS22300 - carotenoid oxygenase family protein, at 4,620,226 to 4,621,722 _RS22300 ABID97_RS22305: ABID97_RS22305 - AzlD domain-containing protein, at 4,621,795 to 4,622,124 _RS22305 ABID97_RS22310: ABID97_RS22310 - AzlC family ABC transporter permease, at 4,622,124 to 4,622,819 _RS22310 Position (kb) 4621 4622 4623Strain fitness (log2 ratio) -2 -1 0 1at 4621.513 kb on + strand, within ABID97_RS22300at 4621.513 kb on + strand, within ABID97_RS22300at 4621.678 kb on + strandat 4621.806 kb on - strandat 4621.874 kb on + strand, within ABID97_RS22305at 4621.874 kb on + strand, within ABID97_RS22305at 4621.874 kb on + strand, within ABID97_RS22305at 4621.875 kb on - strand, within ABID97_RS22305at 4621.875 kb on - strand, within ABID97_RS22305at 4622.202 kb on + strand, within ABID97_RS22310at 4622.265 kb on + strand, within ABID97_RS22310at 4622.266 kb on - strand, within ABID97_RS22310at 4622.481 kb on + strand, within ABID97_RS22310at 4622.503 kb on - strand, within ABID97_RS22310at 4622.518 kb on + strand, within ABID97_RS22310at 4622.518 kb on + strand, within ABID97_RS22310at 4622.518 kb on + strand, within ABID97_RS22310at 4622.519 kb on - strand, within ABID97_RS22310at 4622.519 kb on - strand, within ABID97_RS22310at 4622.570 kb on - strand, within ABID97_RS22310at 4622.762 kb on - strandat 4622.851 kb on + strandat 4622.852 kb on - strandat 4622.857 kb on + strandat 4622.886 kb on - strandat 4622.906 kb on + strandat 4622.907 kb on - strandat 4622.908 kb on + strandat 4622.908 kb on + strandat 4622.908 kb on + strandat 4622.908 kb on + strandat 4622.909 kb on - strandat 4622.909 kb on - strandat 4622.909 kb on - strandat 4622.909 kb on - strandat 4622.909 kb on - strandat 4623.107 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (C)
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4,621,513 + ABID97_RS22300 0.86 +1.6
4,621,513 + ABID97_RS22300 0.86 +0.0
4,621,678 + +0.2
4,621,806 - +0.5
4,621,874 + ABID97_RS22305 0.24 +0.0
4,621,874 + ABID97_RS22305 0.24 +1.3
4,621,874 + ABID97_RS22305 0.24 +0.2
4,621,875 - ABID97_RS22305 0.24 -1.3
4,621,875 - ABID97_RS22305 0.24 +0.3
4,622,202 + ABID97_RS22310 0.11 -0.0
4,622,265 + ABID97_RS22310 0.20 -1.9
4,622,266 - ABID97_RS22310 0.20 -0.1
4,622,481 + ABID97_RS22310 0.51 +0.8
4,622,503 - ABID97_RS22310 0.54 +0.2
4,622,518 + ABID97_RS22310 0.57 +0.1
4,622,518 + ABID97_RS22310 0.57 +0.7
4,622,518 + ABID97_RS22310 0.57 +0.2
4,622,519 - ABID97_RS22310 0.57 +0.3
4,622,519 - ABID97_RS22310 0.57 -0.5
4,622,570 - ABID97_RS22310 0.64 +0.1
4,622,762 - -0.2
4,622,851 + -0.4
4,622,852 - +0.2
4,622,857 + -0.3
4,622,886 - +0.6
4,622,906 + +0.7
4,622,907 - +1.1
4,622,908 + -0.1
4,622,908 + +0.4
4,622,908 + -0.3
4,622,908 + -0.5
4,622,909 - -0.1
4,622,909 - +0.0
4,622,909 - -0.2
4,622,909 - -1.0
4,622,909 - -0.2
4,623,107 - +1.4

Or see this region's nucleotide sequence