Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15995

Experiment: L-tyrosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15990 and ABID97_RS15995 overlap by 4 nucleotidesABID97_RS15995 and ABID97_RS16000 are separated by 118 nucleotidesABID97_RS16000 and ABID97_RS16005 overlap by 4 nucleotides ABID97_RS15990: ABID97_RS15990 - DNA polymerase III subunit delta', at 3,312,485 to 3,313,507 _RS15990 ABID97_RS15995: ABID97_RS15995 - PilZ domain-containing protein, at 3,313,504 to 3,313,881 _RS15995 ABID97_RS16000: ABID97_RS16000 - TatD family hydrolase, at 3,314,000 to 3,314,809 _RS16000 ABID97_RS16005: ABID97_RS16005 - ankyrin repeat domain-containing protein, at 3,314,806 to 3,315,483 _RS16005 Position (kb) 3313 3314Strain fitness (log2 ratio) -2 -1 0 1at 3313.600 kb on + strand, within ABID97_RS15995at 3313.601 kb on - strand, within ABID97_RS15995at 3313.672 kb on + strand, within ABID97_RS15995at 3313.672 kb on + strand, within ABID97_RS15995at 3313.672 kb on + strand, within ABID97_RS15995at 3313.673 kb on - strand, within ABID97_RS15995at 3313.673 kb on - strand, within ABID97_RS15995at 3313.673 kb on - strand, within ABID97_RS15995at 3313.673 kb on - strand, within ABID97_RS15995at 3313.879 kb on + strandat 3313.880 kb on - strandat 3313.880 kb on - strandat 3314.285 kb on + strand, within ABID97_RS16000at 3314.289 kb on - strand, within ABID97_RS16000at 3314.289 kb on - strand, within ABID97_RS16000at 3314.543 kb on + strand, within ABID97_RS16000at 3314.543 kb on + strand, within ABID97_RS16000at 3314.543 kb on + strand, within ABID97_RS16000at 3314.543 kb on + strand, within ABID97_RS16000at 3314.544 kb on - strand, within ABID97_RS16000at 3314.544 kb on - strand, within ABID97_RS16000at 3314.544 kb on - strand, within ABID97_RS16000at 3314.544 kb on - strand, within ABID97_RS16000at 3314.544 kb on - strand, within ABID97_RS16000at 3314.544 kb on - strand, within ABID97_RS16000at 3314.648 kb on + strand, within ABID97_RS16000at 3314.693 kb on + strand, within ABID97_RS16000

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (C)
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3,313,600 + ABID97_RS15995 0.25 +1.2
3,313,601 - ABID97_RS15995 0.26 -0.0
3,313,672 + ABID97_RS15995 0.44 +0.0
3,313,672 + ABID97_RS15995 0.44 +0.7
3,313,672 + ABID97_RS15995 0.44 -1.4
3,313,673 - ABID97_RS15995 0.45 +0.3
3,313,673 - ABID97_RS15995 0.45 +0.2
3,313,673 - ABID97_RS15995 0.45 +0.2
3,313,673 - ABID97_RS15995 0.45 +0.5
3,313,879 + +0.4
3,313,880 - -0.5
3,313,880 - +0.8
3,314,285 + ABID97_RS16000 0.35 +0.1
3,314,289 - ABID97_RS16000 0.36 -1.2
3,314,289 - ABID97_RS16000 0.36 -0.5
3,314,543 + ABID97_RS16000 0.67 -0.7
3,314,543 + ABID97_RS16000 0.67 -0.4
3,314,543 + ABID97_RS16000 0.67 +0.4
3,314,543 + ABID97_RS16000 0.67 -0.8
3,314,544 - ABID97_RS16000 0.67 -0.7
3,314,544 - ABID97_RS16000 0.67 -0.2
3,314,544 - ABID97_RS16000 0.67 -0.2
3,314,544 - ABID97_RS16000 0.67 -0.1
3,314,544 - ABID97_RS16000 0.67 +0.4
3,314,544 - ABID97_RS16000 0.67 -0.5
3,314,648 + ABID97_RS16000 0.80 -0.3
3,314,693 + ABID97_RS16000 0.86 -2.0

Or see this region's nucleotide sequence