Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12640

Experiment: L-tyrosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12635 and ABID97_RS12640 overlap by 14 nucleotidesABID97_RS12640 and ABID97_RS12645 are separated by 29 nucleotidesABID97_RS12645 and ABID97_RS12650 are separated by 231 nucleotides ABID97_RS12635: ABID97_RS12635 - hydantoinase/oxoprolinase family protein, at 2,622,571 to 2,623,671 _RS12635 ABID97_RS12640: ABID97_RS12640 - ATP-grasp domain-containing protein, at 2,623,658 to 2,624,647 _RS12640 ABID97_RS12645: ABID97_RS12645 - HisA/HisF-related TIM barrel protein, at 2,624,677 to 2,625,393 _RS12645 ABID97_RS12650: ABID97_RS12650 - formylmethanofuran dehydrogenase, at 2,625,625 to 2,626,857 _RS12650 Position (kb) 2623 2624 2625Strain fitness (log2 ratio) -1 0 1 2at 2624.620 kb on - strandat 2624.620 kb on - strandat 2624.851 kb on + strand, within ABID97_RS12645at 2624.851 kb on + strand, within ABID97_RS12645at 2624.852 kb on - strand, within ABID97_RS12645at 2624.852 kb on - strand, within ABID97_RS12645at 2625.029 kb on - strand, within ABID97_RS12645at 2625.534 kb on + strandat 2625.535 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (C)
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2,624,620 - -1.1
2,624,620 - -0.1
2,624,851 + ABID97_RS12645 0.24 -0.9
2,624,851 + ABID97_RS12645 0.24 +0.4
2,624,852 - ABID97_RS12645 0.24 +0.1
2,624,852 - ABID97_RS12645 0.24 +1.9
2,625,029 - ABID97_RS12645 0.49 +1.5
2,625,534 + -0.1
2,625,535 - +0.9

Or see this region's nucleotide sequence