Experiment: L-tyrosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02115 and ABID97_RS02120 overlap by 4 nucleotides ABID97_RS02120 and ABID97_RS02125 are separated by 13 nucleotides ABID97_RS02125 and ABID97_RS02130 overlap by 4 nucleotides ABID97_RS02130 and ABID97_RS02135 overlap by 4 nucleotides
ABID97_RS02115: ABID97_RS02115 - PilW family protein, at 424,395 to 425,426
_RS02115
ABID97_RS02120: ABID97_RS02120 - PilX N-terminal domain-containing pilus assembly protein, at 425,423 to 426,046
_RS02120
ABID97_RS02125: ABID97_RS02125 - PilC/PilY family type IV pilus protein, at 426,060 to 430,451
_RS02125
ABID97_RS02130: ABID97_RS02130 - type IV pilin protein, at 430,448 to 430,909
_RS02130
ABID97_RS02135: ABID97_RS02135 - GspH/FimT family pseudopilin, at 430,906 to 431,481
_RS02135
Position (kb) 426
427
428
429
430
431 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 425.081 kb on + strand, within ABID97_RS02115 at 425.127 kb on + strand, within ABID97_RS02115 at 425.127 kb on + strand, within ABID97_RS02115 at 425.127 kb on + strand, within ABID97_RS02115 at 425.127 kb on + strand, within ABID97_RS02115 at 425.128 kb on - strand, within ABID97_RS02115 at 425.128 kb on - strand, within ABID97_RS02115 at 425.422 kb on + strand at 425.422 kb on + strand at 425.423 kb on - strand at 425.423 kb on - strand at 425.423 kb on - strand at 425.429 kb on + strand at 425.429 kb on + strand at 425.429 kb on + strand at 425.430 kb on - strand at 425.430 kb on - strand at 425.430 kb on - strand at 425.430 kb on - strand at 425.430 kb on - strand at 425.903 kb on + strand, within ABID97_RS02120 at 425.904 kb on - strand, within ABID97_RS02120 at 425.904 kb on - strand, within ABID97_RS02120 at 425.966 kb on + strand, within ABID97_RS02120 at 425.966 kb on + strand, within ABID97_RS02120 at 425.966 kb on + strand, within ABID97_RS02120 at 425.966 kb on + strand, within ABID97_RS02120 at 425.966 kb on + strand, within ABID97_RS02120 at 425.967 kb on - strand, within ABID97_RS02120 at 425.967 kb on - strand, within ABID97_RS02120 at 425.967 kb on - strand, within ABID97_RS02120 at 425.967 kb on - strand, within ABID97_RS02120 at 425.967 kb on - strand, within ABID97_RS02120 at 425.967 kb on - strand, within ABID97_RS02120 at 425.967 kb on - strand, within ABID97_RS02120 at 425.967 kb on - strand, within ABID97_RS02120 at 425.967 kb on - strand, within ABID97_RS02120 at 426.273 kb on + strand at 426.348 kb on + strand at 426.348 kb on + strand at 426.349 kb on - strand at 426.349 kb on - strand at 426.378 kb on + strand at 426.379 kb on - strand at 426.397 kb on - strand at 426.406 kb on - strand at 426.406 kb on - strand at 426.409 kb on - strand at 426.433 kb on - strand at 426.433 kb on - strand at 426.433 kb on - strand at 426.484 kb on - strand at 426.484 kb on - strand at 426.628 kb on - strand, within ABID97_RS02125 at 426.840 kb on + strand, within ABID97_RS02125 at 426.840 kb on + strand, within ABID97_RS02125 at 426.840 kb on + strand, within ABID97_RS02125 at 426.840 kb on + strand, within ABID97_RS02125 at 426.840 kb on + strand, within ABID97_RS02125 at 426.841 kb on - strand, within ABID97_RS02125 at 426.841 kb on - strand, within ABID97_RS02125 at 426.886 kb on - strand, within ABID97_RS02125 at 427.119 kb on + strand, within ABID97_RS02125 at 427.176 kb on + strand, within ABID97_RS02125 at 427.177 kb on - strand, within ABID97_RS02125 at 427.296 kb on + strand, within ABID97_RS02125 at 427.297 kb on - strand, within ABID97_RS02125 at 427.353 kb on + strand, within ABID97_RS02125 at 427.399 kb on - strand, within ABID97_RS02125 at 427.421 kb on + strand, within ABID97_RS02125 at 427.421 kb on + strand, within ABID97_RS02125 at 427.422 kb on - strand, within ABID97_RS02125 at 427.425 kb on + strand, within ABID97_RS02125 at 427.425 kb on + strand, within ABID97_RS02125 at 427.425 kb on + strand, within ABID97_RS02125 at 427.425 kb on + strand, within ABID97_RS02125 at 427.426 kb on - strand, within ABID97_RS02125 at 427.542 kb on + strand, within ABID97_RS02125 at 427.581 kb on + strand, within ABID97_RS02125 at 427.582 kb on - strand, within ABID97_RS02125 at 427.582 kb on - strand, within ABID97_RS02125 at 427.612 kb on - strand, within ABID97_RS02125 at 427.614 kb on + strand, within ABID97_RS02125 at 427.629 kb on + strand, within ABID97_RS02125 at 427.629 kb on + strand, within ABID97_RS02125 at 427.629 kb on + strand, within ABID97_RS02125 at 427.629 kb on + strand, within ABID97_RS02125 at 427.630 kb on - strand, within ABID97_RS02125 at 427.630 kb on - strand, within ABID97_RS02125 at 427.630 kb on - strand, within ABID97_RS02125 at 427.705 kb on - strand, within ABID97_RS02125 at 427.705 kb on - strand, within ABID97_RS02125 at 427.761 kb on + strand, within ABID97_RS02125 at 427.761 kb on + strand, within ABID97_RS02125 at 427.761 kb on + strand, within ABID97_RS02125 at 427.762 kb on - strand, within ABID97_RS02125 at 427.861 kb on + strand, within ABID97_RS02125 at 427.914 kb on + strand, within ABID97_RS02125 at 427.914 kb on + strand, within ABID97_RS02125 at 427.914 kb on + strand, within ABID97_RS02125 at 427.914 kb on + strand, within ABID97_RS02125 at 427.915 kb on - strand, within ABID97_RS02125 at 427.916 kb on + strand, within ABID97_RS02125 at 427.916 kb on + strand, within ABID97_RS02125 at 428.004 kb on + strand, within ABID97_RS02125 at 428.005 kb on - strand, within ABID97_RS02125 at 428.172 kb on + strand, within ABID97_RS02125 at 428.222 kb on + strand, within ABID97_RS02125 at 428.223 kb on - strand, within ABID97_RS02125 at 428.223 kb on - strand, within ABID97_RS02125 at 428.223 kb on - strand, within ABID97_RS02125 at 428.310 kb on + strand, within ABID97_RS02125 at 428.310 kb on + strand, within ABID97_RS02125 at 428.311 kb on - strand, within ABID97_RS02125 at 428.311 kb on - strand, within ABID97_RS02125 at 428.311 kb on - strand, within ABID97_RS02125 at 428.311 kb on - strand, within ABID97_RS02125 at 428.311 kb on - strand, within ABID97_RS02125 at 428.313 kb on + strand, within ABID97_RS02125 at 428.313 kb on + strand, within ABID97_RS02125 at 428.314 kb on - strand, within ABID97_RS02125 at 428.442 kb on + strand, within ABID97_RS02125 at 428.443 kb on - strand, within ABID97_RS02125 at 428.649 kb on - strand, within ABID97_RS02125 at 428.649 kb on - strand, within ABID97_RS02125 at 428.742 kb on + strand, within ABID97_RS02125 at 428.742 kb on + strand, within ABID97_RS02125 at 428.742 kb on + strand, within ABID97_RS02125 at 428.743 kb on - strand, within ABID97_RS02125 at 428.871 kb on + strand, within ABID97_RS02125 at 428.871 kb on + strand, within ABID97_RS02125 at 428.872 kb on - strand, within ABID97_RS02125 at 428.982 kb on + strand, within ABID97_RS02125 at 428.982 kb on + strand, within ABID97_RS02125 at 428.983 kb on - strand, within ABID97_RS02125 at 428.983 kb on - strand, within ABID97_RS02125 at 429.034 kb on - strand, within ABID97_RS02125 at 429.034 kb on - strand, within ABID97_RS02125 at 429.034 kb on - strand, within ABID97_RS02125 at 429.034 kb on - strand, within ABID97_RS02125 at 429.034 kb on - strand, within ABID97_RS02125 at 429.034 kb on - strand, within ABID97_RS02125 at 429.054 kb on + strand, within ABID97_RS02125 at 429.054 kb on + strand, within ABID97_RS02125 at 429.054 kb on + strand, within ABID97_RS02125 at 429.055 kb on - strand, within ABID97_RS02125 at 429.055 kb on - strand, within ABID97_RS02125 at 429.055 kb on - strand, within ABID97_RS02125 at 429.055 kb on - strand, within ABID97_RS02125 at 429.315 kb on + strand, within ABID97_RS02125 at 429.315 kb on + strand, within ABID97_RS02125 at 429.316 kb on - strand, within ABID97_RS02125 at 429.316 kb on - strand, within ABID97_RS02125 at 429.316 kb on - strand, within ABID97_RS02125 at 429.354 kb on + strand, within ABID97_RS02125 at 429.354 kb on + strand, within ABID97_RS02125 at 429.355 kb on - strand, within ABID97_RS02125 at 429.355 kb on - strand, within ABID97_RS02125 at 429.462 kb on + strand, within ABID97_RS02125 at 429.731 kb on + strand, within ABID97_RS02125 at 429.731 kb on + strand, within ABID97_RS02125 at 429.780 kb on + strand, within ABID97_RS02125 at 429.781 kb on - strand, within ABID97_RS02125 at 429.781 kb on - strand, within ABID97_RS02125 at 429.804 kb on + strand, within ABID97_RS02125 at 429.849 kb on + strand, within ABID97_RS02125 at 429.849 kb on + strand, within ABID97_RS02125 at 429.849 kb on + strand, within ABID97_RS02125 at 429.850 kb on - strand, within ABID97_RS02125 at 430.425 kb on + strand at 430.425 kb on + strand at 430.425 kb on + strand at 430.425 kb on + strand at 430.426 kb on - strand at 430.622 kb on + strand, within ABID97_RS02130 at 430.622 kb on + strand, within ABID97_RS02130 at 430.623 kb on - strand, within ABID97_RS02130 at 430.624 kb on + strand, within ABID97_RS02130 at 430.625 kb on - strand, within ABID97_RS02130 at 430.643 kb on + strand, within ABID97_RS02130 at 430.643 kb on + strand, within ABID97_RS02130 at 430.643 kb on + strand, within ABID97_RS02130 at 430.643 kb on + strand, within ABID97_RS02130 at 430.643 kb on + strand, within ABID97_RS02130 at 430.644 kb on - strand, within ABID97_RS02130 at 430.644 kb on - strand, within ABID97_RS02130 at 430.644 kb on - strand, within ABID97_RS02130 at 430.644 kb on - strand, within ABID97_RS02130 at 430.644 kb on - strand, within ABID97_RS02130 at 430.644 kb on - strand, within ABID97_RS02130 at 430.644 kb on - strand, within ABID97_RS02130 at 430.644 kb on - strand, within ABID97_RS02130 at 430.647 kb on + strand, within ABID97_RS02130 at 430.839 kb on + strand, within ABID97_RS02130 at 430.840 kb on - strand, within ABID97_RS02130 at 430.840 kb on - strand, within ABID97_RS02130 at 430.840 kb on - strand, within ABID97_RS02130 at 430.852 kb on + strand, within ABID97_RS02130 at 431.165 kb on + strand, within ABID97_RS02135 at 431.165 kb on + strand, within ABID97_RS02135 at 431.236 kb on + strand, within ABID97_RS02135 at 431.236 kb on + strand, within ABID97_RS02135 at 431.237 kb on - strand, within ABID97_RS02135 at 431.281 kb on + strand, within ABID97_RS02135
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (C) remove 425,081 + ABID97_RS02115 0.66 -0.0 425,127 + ABID97_RS02115 0.71 -0.9 425,127 + ABID97_RS02115 0.71 -0.4 425,127 + ABID97_RS02115 0.71 -0.3 425,127 + ABID97_RS02115 0.71 -0.0 425,128 - ABID97_RS02115 0.71 -1.0 425,128 - ABID97_RS02115 0.71 -0.4 425,422 + -0.9 425,422 + +1.3 425,423 - -0.3 425,423 - -0.5 425,423 - -0.5 425,429 + -1.8 425,429 + -0.8 425,429 + -0.5 425,430 - -0.7 425,430 - -0.7 425,430 - +0.7 425,430 - -0.5 425,430 - -1.1 425,903 + ABID97_RS02120 0.77 -1.1 425,904 - ABID97_RS02120 0.77 -0.6 425,904 - ABID97_RS02120 0.77 -0.1 425,966 + ABID97_RS02120 0.87 +0.5 425,966 + ABID97_RS02120 0.87 +0.4 425,966 + ABID97_RS02120 0.87 +0.7 425,966 + ABID97_RS02120 0.87 +0.7 425,966 + ABID97_RS02120 0.87 -0.9 425,967 - ABID97_RS02120 0.87 -0.8 425,967 - ABID97_RS02120 0.87 +0.0 425,967 - ABID97_RS02120 0.87 -0.3 425,967 - ABID97_RS02120 0.87 -0.1 425,967 - ABID97_RS02120 0.87 -0.3 425,967 - ABID97_RS02120 0.87 -1.5 425,967 - ABID97_RS02120 0.87 -0.7 425,967 - ABID97_RS02120 0.87 -0.2 425,967 - ABID97_RS02120 0.87 -0.3 426,273 + -0.6 426,348 + -0.0 426,348 + -1.2 426,349 - -0.3 426,349 - -0.8 426,378 + -2.0 426,379 - -0.3 426,397 - -0.5 426,406 - -1.4 426,406 - -0.7 426,409 - +0.9 426,433 - -0.3 426,433 - -0.9 426,433 - -0.6 426,484 - +3.5 426,484 - -0.8 426,628 - ABID97_RS02125 0.13 -0.5 426,840 + ABID97_RS02125 0.18 -0.4 426,840 + ABID97_RS02125 0.18 -0.5 426,840 + ABID97_RS02125 0.18 +1.5 426,840 + ABID97_RS02125 0.18 -0.4 426,840 + ABID97_RS02125 0.18 -0.6 426,841 - ABID97_RS02125 0.18 -0.1 426,841 - ABID97_RS02125 0.18 -0.7 426,886 - ABID97_RS02125 0.19 +0.3 427,119 + ABID97_RS02125 0.24 -0.3 427,176 + ABID97_RS02125 0.25 +1.0 427,177 - ABID97_RS02125 0.25 +0.4 427,296 + ABID97_RS02125 0.28 -0.7 427,297 - ABID97_RS02125 0.28 -1.6 427,353 + ABID97_RS02125 0.29 -0.7 427,399 - ABID97_RS02125 0.30 -0.4 427,421 + ABID97_RS02125 0.31 -0.0 427,421 + ABID97_RS02125 0.31 -0.1 427,422 - ABID97_RS02125 0.31 -0.8 427,425 + ABID97_RS02125 0.31 -0.8 427,425 + ABID97_RS02125 0.31 -1.3 427,425 + ABID97_RS02125 0.31 -1.1 427,425 + ABID97_RS02125 0.31 -0.7 427,426 - ABID97_RS02125 0.31 -0.3 427,542 + ABID97_RS02125 0.34 -0.4 427,581 + ABID97_RS02125 0.35 -0.9 427,582 - ABID97_RS02125 0.35 -1.5 427,582 - ABID97_RS02125 0.35 -0.1 427,612 - ABID97_RS02125 0.35 -0.0 427,614 + ABID97_RS02125 0.35 -0.7 427,629 + ABID97_RS02125 0.36 +0.4 427,629 + ABID97_RS02125 0.36 -1.0 427,629 + ABID97_RS02125 0.36 -0.1 427,629 + ABID97_RS02125 0.36 -0.1 427,630 - ABID97_RS02125 0.36 -0.9 427,630 - ABID97_RS02125 0.36 -0.8 427,630 - ABID97_RS02125 0.36 -0.8 427,705 - ABID97_RS02125 0.37 +0.3 427,705 - ABID97_RS02125 0.37 +0.4 427,761 + ABID97_RS02125 0.39 +0.0 427,761 + ABID97_RS02125 0.39 -0.2 427,761 + ABID97_RS02125 0.39 -0.1 427,762 - ABID97_RS02125 0.39 +0.3 427,861 + ABID97_RS02125 0.41 +0.5 427,914 + ABID97_RS02125 0.42 -0.7 427,914 + ABID97_RS02125 0.42 -0.7 427,914 + ABID97_RS02125 0.42 -0.9 427,914 + ABID97_RS02125 0.42 -0.5 427,915 - ABID97_RS02125 0.42 +0.1 427,916 + ABID97_RS02125 0.42 -0.3 427,916 + ABID97_RS02125 0.42 -0.7 428,004 + ABID97_RS02125 0.44 -0.8 428,005 - ABID97_RS02125 0.44 -1.1 428,172 + ABID97_RS02125 0.48 -0.7 428,222 + ABID97_RS02125 0.49 -0.5 428,223 - ABID97_RS02125 0.49 -0.3 428,223 - ABID97_RS02125 0.49 -0.2 428,223 - ABID97_RS02125 0.49 -0.5 428,310 + ABID97_RS02125 0.51 -0.9 428,310 + ABID97_RS02125 0.51 -0.9 428,311 - ABID97_RS02125 0.51 -0.2 428,311 - ABID97_RS02125 0.51 -0.2 428,311 - ABID97_RS02125 0.51 -0.2 428,311 - ABID97_RS02125 0.51 +0.2 428,311 - ABID97_RS02125 0.51 -0.1 428,313 + ABID97_RS02125 0.51 -0.2 428,313 + ABID97_RS02125 0.51 -0.3 428,314 - ABID97_RS02125 0.51 -1.0 428,442 + ABID97_RS02125 0.54 +0.5 428,443 - ABID97_RS02125 0.54 +3.5 428,649 - ABID97_RS02125 0.59 +0.0 428,649 - ABID97_RS02125 0.59 +1.9 428,742 + ABID97_RS02125 0.61 +1.5 428,742 + ABID97_RS02125 0.61 -1.0 428,742 + ABID97_RS02125 0.61 -0.6 428,743 - ABID97_RS02125 0.61 +0.8 428,871 + ABID97_RS02125 0.64 -1.3 428,871 + ABID97_RS02125 0.64 +0.0 428,872 - ABID97_RS02125 0.64 -0.7 428,982 + ABID97_RS02125 0.67 -1.4 428,982 + ABID97_RS02125 0.67 +0.0 428,983 - ABID97_RS02125 0.67 +0.4 428,983 - ABID97_RS02125 0.67 -0.1 429,034 - ABID97_RS02125 0.68 -0.7 429,034 - ABID97_RS02125 0.68 -0.3 429,034 - ABID97_RS02125 0.68 -0.8 429,034 - ABID97_RS02125 0.68 +0.1 429,034 - ABID97_RS02125 0.68 -2.1 429,034 - ABID97_RS02125 0.68 -0.2 429,054 + ABID97_RS02125 0.68 -0.0 429,054 + ABID97_RS02125 0.68 -1.4 429,054 + ABID97_RS02125 0.68 -1.3 429,055 - ABID97_RS02125 0.68 -0.2 429,055 - ABID97_RS02125 0.68 +2.1 429,055 - ABID97_RS02125 0.68 -1.8 429,055 - ABID97_RS02125 0.68 -1.2 429,315 + ABID97_RS02125 0.74 -0.4 429,315 + ABID97_RS02125 0.74 -0.5 429,316 - ABID97_RS02125 0.74 -0.2 429,316 - ABID97_RS02125 0.74 +0.0 429,316 - ABID97_RS02125 0.74 -0.1 429,354 + ABID97_RS02125 0.75 -0.7 429,354 + ABID97_RS02125 0.75 +0.6 429,355 - ABID97_RS02125 0.75 -0.9 429,355 - ABID97_RS02125 0.75 -2.2 429,462 + ABID97_RS02125 0.77 -0.2 429,731 + ABID97_RS02125 0.84 +0.2 429,731 + ABID97_RS02125 0.84 -0.5 429,780 + ABID97_RS02125 0.85 -1.0 429,781 - ABID97_RS02125 0.85 -0.4 429,781 - ABID97_RS02125 0.85 -0.3 429,804 + ABID97_RS02125 0.85 -0.2 429,849 + ABID97_RS02125 0.86 +0.3 429,849 + ABID97_RS02125 0.86 +0.0 429,849 + ABID97_RS02125 0.86 -0.5 429,850 - ABID97_RS02125 0.86 -1.2 430,425 + -1.2 430,425 + -1.2 430,425 + -0.7 430,425 + -1.3 430,426 - +0.7 430,622 + ABID97_RS02130 0.38 -0.1 430,622 + ABID97_RS02130 0.38 -0.1 430,623 - ABID97_RS02130 0.38 -0.6 430,624 + ABID97_RS02130 0.38 -1.5 430,625 - ABID97_RS02130 0.38 -0.2 430,643 + ABID97_RS02130 0.42 +0.2 430,643 + ABID97_RS02130 0.42 -0.2 430,643 + ABID97_RS02130 0.42 +0.9 430,643 + ABID97_RS02130 0.42 -0.5 430,643 + ABID97_RS02130 0.42 +0.2 430,644 - ABID97_RS02130 0.42 +0.1 430,644 - ABID97_RS02130 0.42 -0.5 430,644 - ABID97_RS02130 0.42 -0.3 430,644 - ABID97_RS02130 0.42 -0.1 430,644 - ABID97_RS02130 0.42 +0.0 430,644 - ABID97_RS02130 0.42 -0.4 430,644 - ABID97_RS02130 0.42 -0.9 430,644 - ABID97_RS02130 0.42 -0.2 430,647 + ABID97_RS02130 0.43 -0.7 430,839 + ABID97_RS02130 0.85 +0.5 430,840 - ABID97_RS02130 0.85 -0.7 430,840 - ABID97_RS02130 0.85 -0.5 430,840 - ABID97_RS02130 0.85 +0.7 430,852 + ABID97_RS02130 0.87 -0.1 431,165 + ABID97_RS02135 0.45 -0.6 431,165 + ABID97_RS02135 0.45 +0.4 431,236 + ABID97_RS02135 0.57 -1.9 431,236 + ABID97_RS02135 0.57 -0.8 431,237 - ABID97_RS02135 0.57 +1.0 431,281 + ABID97_RS02135 0.65 -0.6
Or see this region's nucleotide sequence