Experiment: L-tyrosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01120 and ABID97_RS01125 are separated by 24 nucleotides ABID97_RS01125 and ABID97_RS01130 are separated by 290 nucleotides ABID97_RS01130 and ABID97_RS01135 are separated by 80 nucleotides
ABID97_RS01120: ABID97_RS01120 - citrate synthase, at 225,945 to 227,111
_RS01120
ABID97_RS01125: ABID97_RS01125 - type 1 glutamine amidotransferase domain-containing protein, at 227,136 to 227,708
_RS01125
ABID97_RS01130: ABID97_RS01130 - tripartite tricarboxylate transporter substrate-binding protein, at 227,999 to 228,973
_RS01130
ABID97_RS01135: ABID97_RS01135 - carboxypeptidase regulatory-like domain-containing protein, at 229,054 to 231,153
_RS01135
Position (kb) 227
228
229 Strain fitness (log2 ratio) -1
0
1
2 at 227.749 kb on + strand at 227.750 kb on - strand at 227.750 kb on - strand at 227.827 kb on + strand at 227.828 kb on - strand at 227.847 kb on + strand at 228.335 kb on + strand, within ABID97_RS01130 at 228.336 kb on - strand, within ABID97_RS01130 at 228.402 kb on - strand, within ABID97_RS01130 at 228.647 kb on + strand, within ABID97_RS01130 at 228.756 kb on - strand, within ABID97_RS01130 at 228.756 kb on - strand, within ABID97_RS01130 at 228.962 kb on + strand at 228.962 kb on + strand at 228.962 kb on + strand at 228.963 kb on - strand at 228.963 kb on - strand at 229.138 kb on - strand at 229.157 kb on + strand at 229.158 kb on - strand at 229.632 kb on - strand, within ABID97_RS01135 at 229.632 kb on - strand, within ABID97_RS01135 at 229.700 kb on + strand, within ABID97_RS01135 at 229.701 kb on - strand, within ABID97_RS01135
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (C) remove 227,749 + +0.3 227,750 - +0.1 227,750 - -0.0 227,827 + +2.4 227,828 - +1.5 227,847 + +2.4 228,335 + ABID97_RS01130 0.34 +0.3 228,336 - ABID97_RS01130 0.35 +0.9 228,402 - ABID97_RS01130 0.41 -0.5 228,647 + ABID97_RS01130 0.66 +0.8 228,756 - ABID97_RS01130 0.78 +2.1 228,756 - ABID97_RS01130 0.78 +2.4 228,962 + +0.2 228,962 + -1.6 228,962 + +0.0 228,963 - +0.3 228,963 - -0.7 229,138 - -0.3 229,157 + -0.6 229,158 - +0.9 229,632 - ABID97_RS01135 0.28 +1.3 229,632 - ABID97_RS01135 0.28 +0.7 229,700 + ABID97_RS01135 0.31 +0.3 229,701 - ABID97_RS01135 0.31 -0.1
Or see this region's nucleotide sequence