Strain Fitness in Escherichia coli BW25113 around b2533

Experiment: Glycolic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfhQ and suhB are separated by 118 nucleotidessuhB and yfhR are separated by 144 nucleotides b2532: yfhQ - predicted methyltransferase (NCBI), at 2,660,605 to 2,661,345 yfhQ b2533: suhB - inositol monophosphatase (NCBI), at 2,661,464 to 2,662,267 suhB b2534: yfhR - predicted peptidase (RefSeq), at 2,662,412 to 2,663,266 yfhR Position (kb) 2661 2662 2663Strain fitness (log2 ratio) -1 0 1 2at 2660.475 kb on - strandat 2660.558 kb on + strandat 2661.004 kb on + strand, within yfhQat 2661.004 kb on + strand, within yfhQat 2661.012 kb on - strand, within yfhQat 2661.023 kb on - strand, within yfhQat 2661.088 kb on - strand, within yfhQat 2661.196 kb on + strand, within yfhQat 2661.215 kb on + strand, within yfhQat 2661.242 kb on + strand, within yfhQat 2661.242 kb on + strand, within yfhQat 2661.287 kb on - strandat 2661.394 kb on + strandat 2662.457 kb on + strandat 2662.590 kb on - strand, within yfhRat 2662.595 kb on - strand, within yfhRat 2662.595 kb on - strand, within yfhRat 2662.650 kb on + strand, within yfhRat 2662.788 kb on - strand, within yfhRat 2662.823 kb on - strand, within yfhRat 2662.857 kb on + strand, within yfhRat 2662.870 kb on - strand, within yfhRat 2662.905 kb on + strand, within yfhRat 2662.991 kb on + strand, within yfhRat 2662.999 kb on - strand, within yfhRat 2663.113 kb on - strand, within yfhRat 2663.120 kb on + strand, within yfhRat 2663.157 kb on + strand, within yfhR

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycolic Acid (C)
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2,660,475 - -0.4
2,660,558 + +0.9
2,661,004 + yfhQ b2532 0.54 +0.7
2,661,004 + yfhQ b2532 0.54 -0.2
2,661,012 - yfhQ b2532 0.55 -1.2
2,661,023 - yfhQ b2532 0.56 +2.1
2,661,088 - yfhQ b2532 0.65 +1.7
2,661,196 + yfhQ b2532 0.80 -0.4
2,661,215 + yfhQ b2532 0.82 +0.0
2,661,242 + yfhQ b2532 0.86 -1.4
2,661,242 + yfhQ b2532 0.86 -1.6
2,661,287 - -0.2
2,661,394 + -0.7
2,662,457 + +0.3
2,662,590 - yfhR b2534 0.21 -0.0
2,662,595 - yfhR b2534 0.21 -0.0
2,662,595 - yfhR b2534 0.21 +0.1
2,662,650 + yfhR b2534 0.28 +0.3
2,662,788 - yfhR b2534 0.44 +0.6
2,662,823 - yfhR b2534 0.48 +0.4
2,662,857 + yfhR b2534 0.52 +0.0
2,662,870 - yfhR b2534 0.54 -0.6
2,662,905 + yfhR b2534 0.58 -0.4
2,662,991 + yfhR b2534 0.68 -0.5
2,662,999 - yfhR b2534 0.69 +0.4
2,663,113 - yfhR b2534 0.82 -0.0
2,663,120 + yfhR b2534 0.83 +0.4
2,663,157 + yfhR b2534 0.87 +0.1

Or see this region's nucleotide sequence