Experiment: KB with Piperacillin 0.775 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_5036 and Psyr_5037 are separated by 204 nucleotides Psyr_5037 and Psyr_5038 are separated by 70 nucleotides Psyr_5038 and Psyr_5039 are separated by 66 nucleotides
Psyr_5036: Psyr_5036 - Response regulator receiver, at 5,975,798 to 5,976,682
_5036
Psyr_5037: Psyr_5037 - phosphate uptake regulator, PhoU, at 5,976,887 to 5,977,648
_5037
Psyr_5038: Psyr_5038 - phosphate ABC transporter ATP-binding protein, PhoT family, at 5,977,719 to 5,978,552
_5038
Psyr_5039: Psyr_5039 - Binding-protein-dependent transport systems inner membrane component, at 5,978,619 to 5,980,289
_5039
Position (kb) 5976
5977
5978 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5975.952 kb on + strand, within Psyr_5036 at 5976.018 kb on - strand, within Psyr_5036 at 5976.453 kb on + strand, within Psyr_5036 at 5976.665 kb on + strand at 5976.665 kb on + strand at 5976.665 kb on + strand at 5976.665 kb on + strand at 5976.666 kb on - strand at 5976.666 kb on - strand at 5976.666 kb on - strand at 5976.666 kb on - strand at 5976.666 kb on - strand at 5976.676 kb on + strand at 5976.676 kb on + strand at 5976.677 kb on - strand at 5976.755 kb on + strand at 5976.756 kb on - strand at 5976.756 kb on - strand at 5976.756 kb on - strand at 5976.806 kb on + strand at 5976.806 kb on + strand at 5976.807 kb on - strand at 5976.807 kb on - strand at 5976.807 kb on - strand at 5976.827 kb on + strand at 5976.827 kb on + strand at 5976.827 kb on + strand at 5976.827 kb on + strand at 5976.828 kb on - strand at 5976.828 kb on - strand at 5976.888 kb on + strand at 5976.888 kb on + strand at 5976.888 kb on + strand at 5976.888 kb on + strand at 5976.888 kb on + strand at 5976.888 kb on + strand at 5976.888 kb on + strand at 5976.889 kb on - strand at 5976.889 kb on - strand at 5976.889 kb on - strand at 5976.889 kb on - strand at 5976.889 kb on - strand at 5976.889 kb on - strand at 5976.889 kb on - strand at 5976.889 kb on - strand at 5976.889 kb on - strand at 5976.892 kb on + strand at 5976.892 kb on + strand at 5976.893 kb on - strand at 5976.893 kb on - strand at 5976.917 kb on - strand at 5976.932 kb on + strand at 5976.932 kb on + strand at 5976.934 kb on + strand at 5976.934 kb on + strand at 5976.934 kb on + strand at 5976.934 kb on + strand at 5976.935 kb on - strand at 5976.935 kb on - strand at 5976.935 kb on - strand at 5976.935 kb on - strand at 5976.935 kb on - strand at 5976.935 kb on - strand at 5976.935 kb on - strand at 5976.935 kb on - strand at 5976.935 kb on - strand at 5977.000 kb on - strand, within Psyr_5037 at 5977.717 kb on + strand at 5977.718 kb on - strand at 5977.718 kb on - strand at 5977.718 kb on - strand at 5977.718 kb on - strand at 5977.718 kb on - strand at 5977.718 kb on - strand at 5977.718 kb on - strand at 5977.718 kb on - strand at 5977.741 kb on + strand at 5977.741 kb on + strand at 5977.741 kb on + strand at 5977.741 kb on + strand at 5977.741 kb on + strand at 5977.742 kb on - strand at 5977.742 kb on - strand at 5977.742 kb on - strand at 5977.742 kb on - strand at 5977.816 kb on + strand, within Psyr_5038 at 5977.816 kb on + strand, within Psyr_5038 at 5977.816 kb on + strand, within Psyr_5038 at 5977.816 kb on + strand, within Psyr_5038 at 5977.816 kb on + strand, within Psyr_5038 at 5977.816 kb on + strand, within Psyr_5038 at 5977.816 kb on + strand, within Psyr_5038 at 5977.816 kb on + strand, within Psyr_5038 at 5977.816 kb on + strand, within Psyr_5038 at 5977.816 kb on + strand, within Psyr_5038 at 5977.816 kb on + strand, within Psyr_5038 at 5977.816 kb on + strand, within Psyr_5038 at 5977.817 kb on - strand, within Psyr_5038 at 5977.817 kb on - strand, within Psyr_5038 at 5977.817 kb on - strand, within Psyr_5038 at 5977.817 kb on - strand, within Psyr_5038 at 5977.817 kb on - strand, within Psyr_5038 at 5977.817 kb on - strand, within Psyr_5038 at 5977.817 kb on - strand, within Psyr_5038 at 5977.817 kb on - strand, within Psyr_5038 at 5977.817 kb on - strand, within Psyr_5038 at 5977.817 kb on - strand, within Psyr_5038 at 5977.817 kb on - strand, within Psyr_5038 at 5977.820 kb on + strand, within Psyr_5038 at 5977.820 kb on + strand, within Psyr_5038 at 5977.820 kb on + strand, within Psyr_5038 at 5977.820 kb on + strand, within Psyr_5038 at 5977.821 kb on - strand, within Psyr_5038 at 5977.821 kb on - strand, within Psyr_5038 at 5977.821 kb on - strand, within Psyr_5038 at 5977.831 kb on + strand, within Psyr_5038 at 5977.832 kb on - strand, within Psyr_5038 at 5977.832 kb on - strand, within Psyr_5038 at 5977.885 kb on + strand, within Psyr_5038 at 5977.885 kb on + strand, within Psyr_5038 at 5977.885 kb on + strand, within Psyr_5038 at 5977.886 kb on - strand, within Psyr_5038 at 5977.886 kb on - strand, within Psyr_5038 at 5977.886 kb on - strand, within Psyr_5038 at 5977.886 kb on - strand, within Psyr_5038 at 5977.904 kb on - strand, within Psyr_5038 at 5977.904 kb on - strand, within Psyr_5038 at 5977.904 kb on - strand, within Psyr_5038 at 5978.156 kb on - strand, within Psyr_5038 at 5978.170 kb on + strand, within Psyr_5038 at 5978.254 kb on + strand, within Psyr_5038 at 5978.254 kb on + strand, within Psyr_5038 at 5978.254 kb on + strand, within Psyr_5038 at 5978.254 kb on + strand, within Psyr_5038 at 5978.254 kb on + strand, within Psyr_5038 at 5978.255 kb on - strand, within Psyr_5038 at 5978.255 kb on - strand, within Psyr_5038 at 5978.255 kb on - strand, within Psyr_5038 at 5978.255 kb on - strand, within Psyr_5038 at 5978.255 kb on - strand, within Psyr_5038 at 5978.409 kb on - strand, within Psyr_5038 at 5978.434 kb on + strand, within Psyr_5038 at 5978.434 kb on + strand, within Psyr_5038 at 5978.434 kb on + strand, within Psyr_5038 at 5978.435 kb on - strand, within Psyr_5038 at 5978.435 kb on - strand, within Psyr_5038 at 5978.435 kb on - strand, within Psyr_5038 at 5978.638 kb on + strand at 5978.638 kb on + strand at 5978.638 kb on + strand at 5978.639 kb on - strand at 5978.639 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Piperacillin 0.775 ug/ml remove 5,975,952 + Psyr_5036 0.17 +0.1 5,976,018 - Psyr_5036 0.25 +1.2 5,976,453 + Psyr_5036 0.74 +0.5 5,976,665 + -0.7 5,976,665 + +0.1 5,976,665 + +0.3 5,976,665 + -0.7 5,976,666 - -0.8 5,976,666 - +1.0 5,976,666 - +0.4 5,976,666 - -0.7 5,976,666 - -0.1 5,976,676 + -0.1 5,976,676 + -0.1 5,976,677 - +3.2 5,976,755 + -0.1 5,976,756 - +0.2 5,976,756 - +0.0 5,976,756 - +2.8 5,976,806 + +0.2 5,976,806 + +0.5 5,976,807 - +0.0 5,976,807 - +0.6 5,976,807 - -0.1 5,976,827 + -0.1 5,976,827 + -0.8 5,976,827 + +0.2 5,976,827 + +0.6 5,976,828 - +0.5 5,976,828 - -0.7 5,976,888 + +0.6 5,976,888 + +1.0 5,976,888 + +0.1 5,976,888 + -0.3 5,976,888 + +2.5 5,976,888 + +0.1 5,976,888 + +1.7 5,976,889 - -1.2 5,976,889 - +1.4 5,976,889 - -0.4 5,976,889 - -1.0 5,976,889 - -0.3 5,976,889 - +0.2 5,976,889 - -0.5 5,976,889 - -0.1 5,976,889 - +0.1 5,976,892 + +0.2 5,976,892 + +0.9 5,976,893 - -0.1 5,976,893 - -1.1 5,976,917 - +0.6 5,976,932 + +0.2 5,976,932 + +1.5 5,976,934 + -0.6 5,976,934 + +1.2 5,976,934 + +0.7 5,976,934 + +0.5 5,976,935 - -0.2 5,976,935 - +1.2 5,976,935 - +1.2 5,976,935 - +0.5 5,976,935 - -0.8 5,976,935 - -0.0 5,976,935 - +0.2 5,976,935 - -0.3 5,976,935 - -0.6 5,977,000 - Psyr_5037 0.15 -0.8 5,977,717 + -1.6 5,977,718 - -0.4 5,977,718 - -0.5 5,977,718 - -0.3 5,977,718 - +0.1 5,977,718 - -0.1 5,977,718 - +0.0 5,977,718 - +0.4 5,977,718 - +1.0 5,977,741 + +0.5 5,977,741 + +1.2 5,977,741 + +0.1 5,977,741 + +1.2 5,977,741 + -1.4 5,977,742 - -0.5 5,977,742 - -0.7 5,977,742 - -0.2 5,977,742 - -1.2 5,977,816 + Psyr_5038 0.12 +0.6 5,977,816 + Psyr_5038 0.12 +0.4 5,977,816 + Psyr_5038 0.12 -0.5 5,977,816 + Psyr_5038 0.12 -1.5 5,977,816 + Psyr_5038 0.12 -1.1 5,977,816 + Psyr_5038 0.12 +1.6 5,977,816 + Psyr_5038 0.12 -0.6 5,977,816 + Psyr_5038 0.12 -1.6 5,977,816 + Psyr_5038 0.12 -0.8 5,977,816 + Psyr_5038 0.12 -0.6 5,977,816 + Psyr_5038 0.12 +0.0 5,977,816 + Psyr_5038 0.12 -1.5 5,977,817 - Psyr_5038 0.12 +0.6 5,977,817 - Psyr_5038 0.12 +0.6 5,977,817 - Psyr_5038 0.12 -0.8 5,977,817 - Psyr_5038 0.12 +0.6 5,977,817 - Psyr_5038 0.12 -0.3 5,977,817 - Psyr_5038 0.12 -1.1 5,977,817 - Psyr_5038 0.12 -0.4 5,977,817 - Psyr_5038 0.12 -0.3 5,977,817 - Psyr_5038 0.12 +0.2 5,977,817 - Psyr_5038 0.12 -0.0 5,977,817 - Psyr_5038 0.12 +0.7 5,977,820 + Psyr_5038 0.12 +0.5 5,977,820 + Psyr_5038 0.12 +0.2 5,977,820 + Psyr_5038 0.12 +0.6 5,977,820 + Psyr_5038 0.12 +0.6 5,977,821 - Psyr_5038 0.12 +0.5 5,977,821 - Psyr_5038 0.12 +0.1 5,977,821 - Psyr_5038 0.12 -0.6 5,977,831 + Psyr_5038 0.13 -0.3 5,977,832 - Psyr_5038 0.14 -0.4 5,977,832 - Psyr_5038 0.14 -0.3 5,977,885 + Psyr_5038 0.20 -1.1 5,977,885 + Psyr_5038 0.20 +0.2 5,977,885 + Psyr_5038 0.20 -0.4 5,977,886 - Psyr_5038 0.20 +0.1 5,977,886 - Psyr_5038 0.20 +0.1 5,977,886 - Psyr_5038 0.20 -2.1 5,977,886 - Psyr_5038 0.20 -0.4 5,977,904 - Psyr_5038 0.22 +0.2 5,977,904 - Psyr_5038 0.22 -0.2 5,977,904 - Psyr_5038 0.22 +0.1 5,978,156 - Psyr_5038 0.52 -1.0 5,978,170 + Psyr_5038 0.54 +1.8 5,978,254 + Psyr_5038 0.64 -1.1 5,978,254 + Psyr_5038 0.64 +1.2 5,978,254 + Psyr_5038 0.64 -0.2 5,978,254 + Psyr_5038 0.64 +0.3 5,978,254 + Psyr_5038 0.64 +1.2 5,978,255 - Psyr_5038 0.64 +1.2 5,978,255 - Psyr_5038 0.64 +0.6 5,978,255 - Psyr_5038 0.64 +0.2 5,978,255 - Psyr_5038 0.64 -0.1 5,978,255 - Psyr_5038 0.64 -0.1 5,978,409 - Psyr_5038 0.83 -0.3 5,978,434 + Psyr_5038 0.86 +1.2 5,978,434 + Psyr_5038 0.86 -0.5 5,978,434 + Psyr_5038 0.86 +1.4 5,978,435 - Psyr_5038 0.86 -0.4 5,978,435 - Psyr_5038 0.86 +0.6 5,978,435 - Psyr_5038 0.86 +0.7 5,978,638 + -2.1 5,978,638 + -0.3 5,978,638 + +0.6 5,978,639 - -0.4 5,978,639 - +0.5
Or see this region's nucleotide sequence