Experiment: KB with Piperacillin 0.775 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4848 and Psyr_4849 are separated by 78 nucleotides Psyr_4849 and Psyr_4850 are separated by 182 nucleotides Psyr_4850 and Psyr_4851 are separated by 80 nucleotides
Psyr_4848: Psyr_4848 - SdiA-regulated, at 5,754,667 to 5,755,620
_4848
Psyr_4849: Psyr_4849 - SdiA-regulated, at 5,755,699 to 5,756,643
_4849
Psyr_4850: Psyr_4850 - Fumarylacetoacetate (FAA) hydrolase, at 5,756,826 to 5,757,491
_4850
Psyr_4851: Psyr_4851 - FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal, at 5,757,572 to 5,758,990
_4851
Position (kb) 5755
5756
5757 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5754.713 kb on + strand at 5754.713 kb on + strand at 5754.713 kb on + strand at 5754.713 kb on + strand at 5754.714 kb on - strand at 5754.714 kb on - strand at 5754.714 kb on - strand at 5754.714 kb on - strand at 5754.714 kb on - strand at 5754.714 kb on - strand at 5754.714 kb on - strand at 5754.714 kb on - strand at 5755.058 kb on + strand, within Psyr_4848 at 5755.059 kb on - strand, within Psyr_4848 at 5755.073 kb on + strand, within Psyr_4848 at 5755.074 kb on - strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.217 kb on + strand, within Psyr_4848 at 5755.217 kb on + strand, within Psyr_4848 at 5755.218 kb on - strand, within Psyr_4848 at 5755.218 kb on - strand, within Psyr_4848 at 5755.320 kb on + strand, within Psyr_4848 at 5755.346 kb on + strand, within Psyr_4848 at 5755.484 kb on + strand, within Psyr_4848 at 5755.513 kb on + strand, within Psyr_4848 at 5755.513 kb on + strand, within Psyr_4848 at 5755.513 kb on + strand, within Psyr_4848 at 5755.513 kb on + strand, within Psyr_4848 at 5755.513 kb on + strand, within Psyr_4848 at 5755.514 kb on - strand, within Psyr_4848 at 5755.514 kb on - strand, within Psyr_4848 at 5755.514 kb on - strand, within Psyr_4848 at 5755.515 kb on + strand, within Psyr_4848 at 5755.515 kb on + strand, within Psyr_4848 at 5755.515 kb on + strand, within Psyr_4848 at 5755.515 kb on + strand, within Psyr_4848 at 5755.516 kb on - strand, within Psyr_4848 at 5755.516 kb on - strand, within Psyr_4848 at 5755.516 kb on - strand, within Psyr_4848 at 5755.528 kb on + strand at 5755.528 kb on + strand at 5755.528 kb on + strand at 5755.528 kb on + strand at 5755.529 kb on - strand at 5755.529 kb on - strand at 5755.529 kb on - strand at 5755.529 kb on - strand at 5755.549 kb on + strand at 5755.550 kb on - strand at 5755.560 kb on + strand at 5755.560 kb on + strand at 5755.561 kb on - strand at 5755.574 kb on - strand at 5755.611 kb on - strand at 5755.636 kb on - strand at 5755.649 kb on + strand at 5755.649 kb on + strand at 5755.649 kb on + strand at 5755.649 kb on + strand at 5755.649 kb on + strand at 5755.649 kb on + strand at 5755.649 kb on + strand at 5755.650 kb on - strand at 5755.650 kb on - strand at 5755.650 kb on - strand at 5755.651 kb on + strand at 5755.651 kb on + strand at 5755.651 kb on + strand at 5755.652 kb on - strand at 5755.652 kb on - strand at 5755.652 kb on - strand at 5755.652 kb on - strand at 5755.652 kb on - strand at 5755.668 kb on + strand at 5755.683 kb on + strand at 5755.684 kb on - strand at 5755.684 kb on - strand at 5755.730 kb on + strand at 5755.730 kb on + strand at 5755.730 kb on + strand at 5755.731 kb on - strand at 5755.731 kb on - strand at 5755.731 kb on - strand at 5755.757 kb on + strand at 5755.757 kb on + strand at 5755.757 kb on + strand at 5755.757 kb on + strand at 5755.757 kb on + strand at 5755.757 kb on + strand at 5755.757 kb on + strand at 5755.757 kb on + strand at 5755.757 kb on + strand at 5755.757 kb on + strand at 5755.757 kb on + strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.806 kb on + strand, within Psyr_4849 at 5756.013 kb on + strand, within Psyr_4849 at 5756.013 kb on + strand, within Psyr_4849 at 5756.027 kb on + strand, within Psyr_4849 at 5756.027 kb on + strand, within Psyr_4849 at 5756.027 kb on + strand, within Psyr_4849 at 5756.028 kb on - strand, within Psyr_4849 at 5756.028 kb on - strand, within Psyr_4849 at 5756.057 kb on - strand, within Psyr_4849 at 5756.133 kb on - strand, within Psyr_4849 at 5756.133 kb on - strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.367 kb on + strand, within Psyr_4849 at 5756.369 kb on + strand, within Psyr_4849 at 5756.369 kb on + strand, within Psyr_4849 at 5756.369 kb on + strand, within Psyr_4849 at 5756.369 kb on + strand, within Psyr_4849 at 5756.369 kb on + strand, within Psyr_4849 at 5756.369 kb on + strand, within Psyr_4849 at 5756.370 kb on - strand, within Psyr_4849 at 5756.370 kb on - strand, within Psyr_4849 at 5756.370 kb on - strand, within Psyr_4849 at 5756.370 kb on - strand, within Psyr_4849 at 5756.370 kb on - strand, within Psyr_4849 at 5756.370 kb on - strand, within Psyr_4849 at 5756.370 kb on - strand, within Psyr_4849 at 5756.435 kb on + strand, within Psyr_4849 at 5756.436 kb on - strand, within Psyr_4849 at 5756.574 kb on - strand at 5756.574 kb on - strand at 5756.594 kb on + strand at 5756.594 kb on + strand at 5756.594 kb on + strand at 5756.595 kb on - strand at 5756.595 kb on - strand at 5756.614 kb on - strand at 5756.635 kb on - strand at 5756.748 kb on + strand at 5756.748 kb on + strand at 5756.748 kb on + strand at 5756.827 kb on + strand at 5756.827 kb on + strand at 5757.219 kb on + strand, within Psyr_4850 at 5757.219 kb on + strand, within Psyr_4850 at 5757.220 kb on - strand, within Psyr_4850 at 5757.284 kb on - strand, within Psyr_4850 at 5757.412 kb on + strand, within Psyr_4850 at 5757.416 kb on + strand, within Psyr_4850 at 5757.417 kb on - strand, within Psyr_4850 at 5757.437 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.473 kb on - strand at 5757.473 kb on - strand at 5757.473 kb on - strand at 5757.473 kb on - strand at 5757.473 kb on - strand at 5757.485 kb on - strand at 5757.509 kb on + strand at 5757.509 kb on + strand at 5757.509 kb on + strand at 5757.510 kb on - strand at 5757.510 kb on - strand at 5757.510 kb on - strand at 5757.516 kb on + strand at 5757.525 kb on + strand at 5757.525 kb on + strand at 5757.642 kb on + strand at 5757.642 kb on + strand at 5757.642 kb on + strand at 5757.643 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Piperacillin 0.775 ug/ml remove 5,754,713 + -0.3 5,754,713 + -0.1 5,754,713 + -0.6 5,754,713 + -0.5 5,754,714 - -0.2 5,754,714 - +0.6 5,754,714 - +0.4 5,754,714 - -0.6 5,754,714 - +0.4 5,754,714 - +0.0 5,754,714 - +0.5 5,754,714 - +0.2 5,755,058 + Psyr_4848 0.41 -0.3 5,755,059 - Psyr_4848 0.41 +0.2 5,755,073 + Psyr_4848 0.43 -0.4 5,755,074 - Psyr_4848 0.43 +1.0 5,755,199 + Psyr_4848 0.56 -1.1 5,755,199 + Psyr_4848 0.56 -0.2 5,755,199 + Psyr_4848 0.56 -0.0 5,755,199 + Psyr_4848 0.56 +0.0 5,755,199 + Psyr_4848 0.56 +0.8 5,755,199 + Psyr_4848 0.56 -0.1 5,755,199 + Psyr_4848 0.56 +1.3 5,755,199 + Psyr_4848 0.56 +0.7 5,755,199 + Psyr_4848 0.56 -0.4 5,755,200 - Psyr_4848 0.56 -0.2 5,755,200 - Psyr_4848 0.56 +0.2 5,755,200 - Psyr_4848 0.56 +0.8 5,755,200 - Psyr_4848 0.56 +0.2 5,755,200 - Psyr_4848 0.56 -0.5 5,755,200 - Psyr_4848 0.56 -0.0 5,755,200 - Psyr_4848 0.56 +0.4 5,755,200 - Psyr_4848 0.56 -1.2 5,755,200 - Psyr_4848 0.56 +0.2 5,755,200 - Psyr_4848 0.56 +0.0 5,755,217 + Psyr_4848 0.58 +0.6 5,755,217 + Psyr_4848 0.58 -0.1 5,755,218 - Psyr_4848 0.58 +0.4 5,755,218 - Psyr_4848 0.58 +0.1 5,755,320 + Psyr_4848 0.68 -0.7 5,755,346 + Psyr_4848 0.71 -0.7 5,755,484 + Psyr_4848 0.86 -0.7 5,755,513 + Psyr_4848 0.89 -0.5 5,755,513 + Psyr_4848 0.89 -0.8 5,755,513 + Psyr_4848 0.89 +0.1 5,755,513 + Psyr_4848 0.89 +0.9 5,755,513 + Psyr_4848 0.89 +1.5 5,755,514 - Psyr_4848 0.89 -0.3 5,755,514 - Psyr_4848 0.89 +0.6 5,755,514 - Psyr_4848 0.89 +1.2 5,755,515 + Psyr_4848 0.89 -1.2 5,755,515 + Psyr_4848 0.89 -1.1 5,755,515 + Psyr_4848 0.89 +0.3 5,755,515 + Psyr_4848 0.89 -0.8 5,755,516 - Psyr_4848 0.89 +0.4 5,755,516 - Psyr_4848 0.89 -0.2 5,755,516 - Psyr_4848 0.89 +1.5 5,755,528 + +0.1 5,755,528 + -0.0 5,755,528 + -0.4 5,755,528 + +2.2 5,755,529 - -1.1 5,755,529 - -1.4 5,755,529 - -1.2 5,755,529 - -0.8 5,755,549 + -0.7 5,755,550 - +0.3 5,755,560 + +0.4 5,755,560 + -0.8 5,755,561 - +0.5 5,755,574 - +0.0 5,755,611 - +0.1 5,755,636 - +1.0 5,755,649 + -1.3 5,755,649 + -0.4 5,755,649 + -1.4 5,755,649 + -0.6 5,755,649 + +0.9 5,755,649 + -0.3 5,755,649 + -0.4 5,755,650 - +1.2 5,755,650 - -0.3 5,755,650 - -0.8 5,755,651 + -1.2 5,755,651 + -0.1 5,755,651 + -0.0 5,755,652 - -1.3 5,755,652 - +0.1 5,755,652 - +0.6 5,755,652 - -0.0 5,755,652 - +0.2 5,755,668 + +0.2 5,755,683 + -1.0 5,755,684 - -1.5 5,755,684 - -0.6 5,755,730 + -0.2 5,755,730 + -0.9 5,755,730 + +0.3 5,755,731 - -0.7 5,755,731 - +0.9 5,755,731 - +0.6 5,755,757 + -0.8 5,755,757 + +1.1 5,755,757 + -0.8 5,755,757 + +0.3 5,755,757 + -0.7 5,755,757 + +0.8 5,755,757 + +0.2 5,755,757 + +1.4 5,755,757 + +0.2 5,755,757 + -1.0 5,755,757 + +0.8 5,755,758 - -1.2 5,755,758 - +1.2 5,755,758 - +0.4 5,755,758 - +0.1 5,755,758 - -0.1 5,755,758 - +1.2 5,755,758 - +0.2 5,755,758 - +0.4 5,755,758 - -0.1 5,755,758 - -0.5 5,755,758 - -0.3 5,755,758 - -0.5 5,755,758 - +1.4 5,755,806 + Psyr_4849 0.11 +0.7 5,756,013 + Psyr_4849 0.33 +0.3 5,756,013 + Psyr_4849 0.33 -0.3 5,756,027 + Psyr_4849 0.35 +0.8 5,756,027 + Psyr_4849 0.35 -0.9 5,756,027 + Psyr_4849 0.35 +1.3 5,756,028 - Psyr_4849 0.35 +0.2 5,756,028 - Psyr_4849 0.35 +2.2 5,756,057 - Psyr_4849 0.38 +0.4 5,756,133 - Psyr_4849 0.46 -2.3 5,756,133 - Psyr_4849 0.46 +0.4 5,756,290 + Psyr_4849 0.63 -0.3 5,756,290 + Psyr_4849 0.63 -0.1 5,756,290 + Psyr_4849 0.63 -0.3 5,756,290 + Psyr_4849 0.63 -0.8 5,756,290 + Psyr_4849 0.63 +1.6 5,756,291 - Psyr_4849 0.63 +1.5 5,756,291 - Psyr_4849 0.63 +1.5 5,756,291 - Psyr_4849 0.63 -1.9 5,756,291 - Psyr_4849 0.63 -1.6 5,756,291 - Psyr_4849 0.63 +0.1 5,756,367 + Psyr_4849 0.71 +0.2 5,756,369 + Psyr_4849 0.71 -0.3 5,756,369 + Psyr_4849 0.71 +0.7 5,756,369 + Psyr_4849 0.71 +1.9 5,756,369 + Psyr_4849 0.71 -1.1 5,756,369 + Psyr_4849 0.71 -0.0 5,756,369 + Psyr_4849 0.71 -0.6 5,756,370 - Psyr_4849 0.71 +0.3 5,756,370 - Psyr_4849 0.71 -1.6 5,756,370 - Psyr_4849 0.71 +0.2 5,756,370 - Psyr_4849 0.71 +0.0 5,756,370 - Psyr_4849 0.71 +1.2 5,756,370 - Psyr_4849 0.71 +0.2 5,756,370 - Psyr_4849 0.71 -0.3 5,756,435 + Psyr_4849 0.78 +1.2 5,756,436 - Psyr_4849 0.78 +0.7 5,756,574 - +0.2 5,756,574 - +0.9 5,756,594 + -0.8 5,756,594 + -0.1 5,756,594 + +0.6 5,756,595 - -1.0 5,756,595 - +1.2 5,756,614 - -0.0 5,756,635 - +0.5 5,756,748 + -0.2 5,756,748 + -0.3 5,756,748 + +0.8 5,756,827 + +0.2 5,756,827 + -1.3 5,757,219 + Psyr_4850 0.59 -1.4 5,757,219 + Psyr_4850 0.59 -0.1 5,757,220 - Psyr_4850 0.59 +0.9 5,757,284 - Psyr_4850 0.69 -2.3 5,757,412 + Psyr_4850 0.88 +0.1 5,757,416 + Psyr_4850 0.89 +0.4 5,757,417 - Psyr_4850 0.89 -1.2 5,757,437 + -0.1 5,757,472 + -1.4 5,757,472 + -0.2 5,757,472 + -0.4 5,757,472 + +0.4 5,757,472 + +0.2 5,757,472 + +0.6 5,757,472 + +0.2 5,757,472 + -0.3 5,757,472 + -0.4 5,757,472 + -1.3 5,757,473 - -0.1 5,757,473 - +0.8 5,757,473 - -0.8 5,757,473 - +0.7 5,757,473 - +0.2 5,757,485 - -0.0 5,757,509 + +0.2 5,757,509 + +1.3 5,757,509 + +1.2 5,757,510 - +1.7 5,757,510 - +0.2 5,757,510 - +1.3 5,757,516 + -0.4 5,757,525 + -0.2 5,757,525 + +0.2 5,757,642 + +0.5 5,757,642 + +0.1 5,757,642 + +0.2 5,757,643 - +1.8
Or see this region's nucleotide sequence