Experiment: KB with Piperacillin 0.775 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4715 and Psyr_4716 are separated by 50 nucleotides Psyr_4716 and Psyr_4717 are separated by 277 nucleotides Psyr_4717 and Psyr_4718 are separated by 108 nucleotides
Psyr_4715: Psyr_4715 - Sarcosine oxidase, alpha subunit, heterotetrameric, at 5,586,261 to 5,589,281
_4715
Psyr_4716: Psyr_4716 - Sarcosine oxidase, gamma subunit, heterotetrameric, at 5,589,332 to 5,589,964
_4716
Psyr_4717: Psyr_4717 - formyltetrahydrofolate deformylase, at 5,590,242 to 5,591,099
_4717
Psyr_4718: Psyr_4718 - glutathione-independent formaldehyde dehydrogenase, at 5,591,208 to 5,592,407
_4718
Position (kb) 5590
5591
5592 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5589.280 kb on - strand at 5589.664 kb on - strand, within Psyr_4716 at 5589.756 kb on + strand, within Psyr_4716 at 5589.776 kb on + strand, within Psyr_4716 at 5589.776 kb on + strand, within Psyr_4716 at 5589.776 kb on + strand, within Psyr_4716 at 5589.776 kb on + strand, within Psyr_4716 at 5589.776 kb on + strand, within Psyr_4716 at 5589.776 kb on + strand, within Psyr_4716 at 5589.777 kb on - strand, within Psyr_4716 at 5589.985 kb on - strand at 5590.015 kb on + strand at 5590.016 kb on - strand at 5590.016 kb on - strand at 5590.016 kb on - strand at 5590.016 kb on - strand at 5590.016 kb on - strand at 5590.083 kb on - strand at 5590.158 kb on - strand at 5590.225 kb on - strand at 5590.241 kb on + strand at 5590.242 kb on - strand at 5590.341 kb on + strand, within Psyr_4717 at 5590.341 kb on + strand, within Psyr_4717 at 5590.341 kb on + strand, within Psyr_4717 at 5590.341 kb on + strand, within Psyr_4717 at 5590.341 kb on + strand, within Psyr_4717 at 5590.342 kb on - strand, within Psyr_4717 at 5590.342 kb on - strand, within Psyr_4717 at 5590.342 kb on - strand, within Psyr_4717 at 5590.342 kb on - strand, within Psyr_4717 at 5590.342 kb on - strand, within Psyr_4717 at 5590.517 kb on - strand, within Psyr_4717 at 5590.575 kb on - strand, within Psyr_4717 at 5590.655 kb on + strand, within Psyr_4717 at 5590.655 kb on + strand, within Psyr_4717 at 5590.655 kb on + strand, within Psyr_4717 at 5590.655 kb on + strand, within Psyr_4717 at 5590.655 kb on + strand, within Psyr_4717 at 5590.655 kb on + strand, within Psyr_4717 at 5590.656 kb on - strand, within Psyr_4717 at 5590.656 kb on - strand, within Psyr_4717 at 5590.656 kb on - strand, within Psyr_4717 at 5590.656 kb on - strand, within Psyr_4717 at 5590.659 kb on + strand, within Psyr_4717 at 5590.659 kb on + strand, within Psyr_4717 at 5590.660 kb on - strand, within Psyr_4717 at 5590.660 kb on - strand, within Psyr_4717 at 5590.660 kb on - strand, within Psyr_4717 at 5590.660 kb on - strand, within Psyr_4717 at 5590.660 kb on - strand, within Psyr_4717 at 5590.662 kb on + strand, within Psyr_4717 at 5590.662 kb on + strand, within Psyr_4717 at 5590.662 kb on + strand, within Psyr_4717 at 5590.761 kb on + strand, within Psyr_4717 at 5590.761 kb on + strand, within Psyr_4717 at 5590.761 kb on + strand, within Psyr_4717 at 5590.762 kb on - strand, within Psyr_4717 at 5590.762 kb on - strand, within Psyr_4717 at 5590.861 kb on - strand, within Psyr_4717 at 5590.873 kb on - strand, within Psyr_4717 at 5590.873 kb on - strand, within Psyr_4717 at 5590.873 kb on - strand, within Psyr_4717 at 5590.911 kb on + strand, within Psyr_4717 at 5590.911 kb on + strand, within Psyr_4717 at 5590.911 kb on + strand, within Psyr_4717 at 5590.911 kb on + strand, within Psyr_4717 at 5590.911 kb on + strand, within Psyr_4717 at 5590.912 kb on - strand, within Psyr_4717 at 5590.912 kb on - strand, within Psyr_4717 at 5590.912 kb on - strand, within Psyr_4717 at 5590.912 kb on - strand, within Psyr_4717 at 5590.912 kb on - strand, within Psyr_4717 at 5590.912 kb on - strand, within Psyr_4717 at 5590.912 kb on - strand, within Psyr_4717 at 5590.912 kb on - strand, within Psyr_4717 at 5591.097 kb on + strand at 5591.128 kb on + strand at 5591.170 kb on + strand at 5591.189 kb on + strand at 5591.189 kb on + strand at 5591.190 kb on - strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.207 kb on + strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.208 kb on - strand at 5591.227 kb on + strand at 5591.227 kb on + strand at 5591.228 kb on - strand at 5591.228 kb on - strand at 5591.228 kb on - strand at 5591.228 kb on - strand at 5591.228 kb on - strand at 5591.228 kb on - strand at 5591.232 kb on + strand at 5591.232 kb on + strand at 5591.232 kb on + strand at 5591.233 kb on - strand at 5591.233 kb on - strand at 5591.368 kb on + strand, within Psyr_4718 at 5591.369 kb on - strand, within Psyr_4718 at 5591.402 kb on - strand, within Psyr_4718 at 5591.583 kb on + strand, within Psyr_4718 at 5591.583 kb on + strand, within Psyr_4718 at 5591.583 kb on + strand, within Psyr_4718 at 5591.583 kb on + strand, within Psyr_4718 at 5591.583 kb on + strand, within Psyr_4718 at 5591.583 kb on + strand, within Psyr_4718 at 5591.584 kb on - strand, within Psyr_4718 at 5591.584 kb on - strand, within Psyr_4718 at 5591.584 kb on - strand, within Psyr_4718 at 5591.584 kb on - strand, within Psyr_4718 at 5591.622 kb on + strand, within Psyr_4718 at 5591.622 kb on + strand, within Psyr_4718 at 5591.622 kb on + strand, within Psyr_4718 at 5591.622 kb on + strand, within Psyr_4718 at 5591.622 kb on + strand, within Psyr_4718 at 5591.622 kb on + strand, within Psyr_4718 at 5591.622 kb on + strand, within Psyr_4718 at 5591.623 kb on - strand, within Psyr_4718 at 5591.623 kb on - strand, within Psyr_4718 at 5591.637 kb on + strand, within Psyr_4718 at 5591.778 kb on + strand, within Psyr_4718 at 5591.778 kb on + strand, within Psyr_4718 at 5591.778 kb on + strand, within Psyr_4718 at 5591.778 kb on + strand, within Psyr_4718 at 5591.778 kb on + strand, within Psyr_4718 at 5591.779 kb on - strand, within Psyr_4718 at 5591.779 kb on - strand, within Psyr_4718 at 5591.779 kb on - strand, within Psyr_4718 at 5591.779 kb on - strand, within Psyr_4718 at 5591.779 kb on - strand, within Psyr_4718 at 5591.779 kb on - strand, within Psyr_4718 at 5591.779 kb on - strand, within Psyr_4718 at 5591.779 kb on - strand, within Psyr_4718 at 5591.779 kb on - strand, within Psyr_4718 at 5591.779 kb on - strand, within Psyr_4718 at 5591.779 kb on - strand, within Psyr_4718 at 5592.076 kb on + strand, within Psyr_4718 at 5592.076 kb on + strand, within Psyr_4718
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Piperacillin 0.775 ug/ml remove 5,589,280 - +0.6 5,589,664 - Psyr_4716 0.52 +0.5 5,589,756 + Psyr_4716 0.67 +0.3 5,589,776 + Psyr_4716 0.70 -0.2 5,589,776 + Psyr_4716 0.70 +0.7 5,589,776 + Psyr_4716 0.70 +0.8 5,589,776 + Psyr_4716 0.70 +0.9 5,589,776 + Psyr_4716 0.70 +0.1 5,589,776 + Psyr_4716 0.70 -0.9 5,589,777 - Psyr_4716 0.70 +0.1 5,589,985 - -1.3 5,590,015 + +1.0 5,590,016 - +0.1 5,590,016 - -1.6 5,590,016 - +0.4 5,590,016 - +1.1 5,590,016 - -1.3 5,590,083 - -0.1 5,590,158 - +0.0 5,590,225 - +2.6 5,590,241 + +1.7 5,590,242 - +0.9 5,590,341 + Psyr_4717 0.12 -0.4 5,590,341 + Psyr_4717 0.12 -0.9 5,590,341 + Psyr_4717 0.12 -0.8 5,590,341 + Psyr_4717 0.12 +1.1 5,590,341 + Psyr_4717 0.12 -0.8 5,590,342 - Psyr_4717 0.12 +0.3 5,590,342 - Psyr_4717 0.12 -1.7 5,590,342 - Psyr_4717 0.12 +0.3 5,590,342 - Psyr_4717 0.12 -1.0 5,590,342 - Psyr_4717 0.12 +1.1 5,590,517 - Psyr_4717 0.32 -0.8 5,590,575 - Psyr_4717 0.39 -0.5 5,590,655 + Psyr_4717 0.48 -0.3 5,590,655 + Psyr_4717 0.48 +1.3 5,590,655 + Psyr_4717 0.48 -0.3 5,590,655 + Psyr_4717 0.48 +0.0 5,590,655 + Psyr_4717 0.48 +0.1 5,590,655 + Psyr_4717 0.48 -1.2 5,590,656 - Psyr_4717 0.48 +0.6 5,590,656 - Psyr_4717 0.48 +0.4 5,590,656 - Psyr_4717 0.48 +0.4 5,590,656 - Psyr_4717 0.48 +0.4 5,590,659 + Psyr_4717 0.49 +0.9 5,590,659 + Psyr_4717 0.49 +0.2 5,590,660 - Psyr_4717 0.49 +0.2 5,590,660 - Psyr_4717 0.49 +0.3 5,590,660 - Psyr_4717 0.49 +2.6 5,590,660 - Psyr_4717 0.49 +0.5 5,590,660 - Psyr_4717 0.49 +1.5 5,590,662 + Psyr_4717 0.49 -0.2 5,590,662 + Psyr_4717 0.49 +0.7 5,590,662 + Psyr_4717 0.49 +0.0 5,590,761 + Psyr_4717 0.60 +0.1 5,590,761 + Psyr_4717 0.60 -0.5 5,590,761 + Psyr_4717 0.60 +1.4 5,590,762 - Psyr_4717 0.61 -1.1 5,590,762 - Psyr_4717 0.61 -0.5 5,590,861 - Psyr_4717 0.72 -0.5 5,590,873 - Psyr_4717 0.74 +0.7 5,590,873 - Psyr_4717 0.74 -0.1 5,590,873 - Psyr_4717 0.74 -0.3 5,590,911 + Psyr_4717 0.78 +0.1 5,590,911 + Psyr_4717 0.78 +0.0 5,590,911 + Psyr_4717 0.78 +0.1 5,590,911 + Psyr_4717 0.78 -1.2 5,590,911 + Psyr_4717 0.78 -0.5 5,590,912 - Psyr_4717 0.78 -0.0 5,590,912 - Psyr_4717 0.78 +1.3 5,590,912 - Psyr_4717 0.78 -1.1 5,590,912 - Psyr_4717 0.78 -1.2 5,590,912 - Psyr_4717 0.78 +0.3 5,590,912 - Psyr_4717 0.78 -0.1 5,590,912 - Psyr_4717 0.78 +0.7 5,590,912 - Psyr_4717 0.78 +0.4 5,591,097 + +0.6 5,591,128 + +0.9 5,591,170 + -1.0 5,591,189 + -1.9 5,591,189 + +0.7 5,591,190 - +0.1 5,591,207 + +0.4 5,591,207 + +1.6 5,591,207 + -0.6 5,591,207 + +1.1 5,591,207 + -1.9 5,591,207 + +0.4 5,591,207 + +0.3 5,591,207 + +0.4 5,591,207 + -0.3 5,591,207 + -0.6 5,591,207 + +0.5 5,591,207 + -0.1 5,591,207 + -0.4 5,591,207 + +0.1 5,591,207 + +1.5 5,591,207 + -1.9 5,591,207 + -0.3 5,591,207 + +0.6 5,591,207 + +0.3 5,591,207 + +1.1 5,591,207 + +0.4 5,591,207 + -1.2 5,591,207 + +0.3 5,591,207 + -0.8 5,591,207 + +0.0 5,591,207 + -0.4 5,591,207 + -0.2 5,591,207 + +1.9 5,591,207 + +0.3 5,591,207 + -0.5 5,591,207 + -0.4 5,591,207 + +0.1 5,591,207 + +0.3 5,591,207 + -0.4 5,591,207 + -2.4 5,591,207 + +1.1 5,591,207 + +0.7 5,591,207 + -0.7 5,591,207 + -0.2 5,591,207 + -0.4 5,591,207 + +0.1 5,591,208 - -0.9 5,591,208 - -0.1 5,591,208 - -0.3 5,591,208 - -0.5 5,591,208 - +1.6 5,591,208 - +0.1 5,591,208 - -0.4 5,591,208 - -0.0 5,591,208 - +0.4 5,591,208 - -0.3 5,591,208 - -0.1 5,591,208 - +1.8 5,591,208 - +1.8 5,591,208 - -0.7 5,591,208 - -0.6 5,591,208 - +0.1 5,591,208 - -0.4 5,591,208 - +0.4 5,591,208 - +0.1 5,591,208 - +0.6 5,591,208 - -0.5 5,591,208 - +0.6 5,591,208 - +0.0 5,591,208 - +0.8 5,591,208 - +0.3 5,591,208 - +0.7 5,591,208 - +0.8 5,591,208 - -0.4 5,591,208 - +0.8 5,591,208 - +0.1 5,591,227 + -0.9 5,591,227 + +0.4 5,591,228 - -0.5 5,591,228 - +0.1 5,591,228 - +1.0 5,591,228 - -0.3 5,591,228 - +0.1 5,591,228 - +1.1 5,591,232 + -1.2 5,591,232 + -1.2 5,591,232 + +0.1 5,591,233 - -0.6 5,591,233 - -0.9 5,591,368 + Psyr_4718 0.13 +0.4 5,591,369 - Psyr_4718 0.13 +0.0 5,591,402 - Psyr_4718 0.16 -0.4 5,591,583 + Psyr_4718 0.31 +1.6 5,591,583 + Psyr_4718 0.31 -0.2 5,591,583 + Psyr_4718 0.31 +0.1 5,591,583 + Psyr_4718 0.31 +1.9 5,591,583 + Psyr_4718 0.31 +0.9 5,591,583 + Psyr_4718 0.31 -1.2 5,591,584 - Psyr_4718 0.31 +0.1 5,591,584 - Psyr_4718 0.31 +0.5 5,591,584 - Psyr_4718 0.31 +0.0 5,591,584 - Psyr_4718 0.31 -0.3 5,591,622 + Psyr_4718 0.34 -0.2 5,591,622 + Psyr_4718 0.34 +1.3 5,591,622 + Psyr_4718 0.34 -0.4 5,591,622 + Psyr_4718 0.34 +0.1 5,591,622 + Psyr_4718 0.34 +1.0 5,591,622 + Psyr_4718 0.34 -0.0 5,591,622 + Psyr_4718 0.34 -1.0 5,591,623 - Psyr_4718 0.35 +0.6 5,591,623 - Psyr_4718 0.35 +0.6 5,591,637 + Psyr_4718 0.36 +0.6 5,591,778 + Psyr_4718 0.47 +0.6 5,591,778 + Psyr_4718 0.47 +1.1 5,591,778 + Psyr_4718 0.47 -0.3 5,591,778 + Psyr_4718 0.47 +1.1 5,591,778 + Psyr_4718 0.47 +0.1 5,591,779 - Psyr_4718 0.48 +0.9 5,591,779 - Psyr_4718 0.48 -0.8 5,591,779 - Psyr_4718 0.48 -1.9 5,591,779 - Psyr_4718 0.48 +0.1 5,591,779 - Psyr_4718 0.48 +0.1 5,591,779 - Psyr_4718 0.48 +0.4 5,591,779 - Psyr_4718 0.48 +0.8 5,591,779 - Psyr_4718 0.48 +0.1 5,591,779 - Psyr_4718 0.48 -0.1 5,591,779 - Psyr_4718 0.48 +0.8 5,591,779 - Psyr_4718 0.48 +0.6 5,592,076 + Psyr_4718 0.72 +0.1 5,592,076 + Psyr_4718 0.72 -0.2
Or see this region's nucleotide sequence