Experiment: KB with Piperacillin 0.775 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4571 and Psyr_4572 are separated by 56 nucleotides Psyr_4572 and Psyr_4573 are separated by 103 nucleotides Psyr_4573 and Psyr_4574 are separated by 121 nucleotides
Psyr_4571: Psyr_4571 - Protein of unknown function DUF805, at 5,435,070 to 5,435,984
_4571
Psyr_4572: Psyr_4572 - Short-chain dehydrogenase/reductase SDR, at 5,436,041 to 5,436,817
_4572
Psyr_4573: Psyr_4573 - Histidine triad (HIT) protein, at 5,436,921 to 5,437,259
_4573
Psyr_4574: Psyr_4574 - conserved hypothetical protein, at 5,437,381 to 5,438,028
_4574
Position (kb) 5436
5437 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5435.050 kb on + strand at 5435.050 kb on + strand at 5435.232 kb on + strand, within Psyr_4571 at 5435.232 kb on + strand, within Psyr_4571 at 5435.232 kb on + strand, within Psyr_4571 at 5435.232 kb on + strand, within Psyr_4571 at 5435.233 kb on - strand, within Psyr_4571 at 5435.233 kb on - strand, within Psyr_4571 at 5435.233 kb on - strand, within Psyr_4571 at 5435.233 kb on - strand, within Psyr_4571 at 5435.250 kb on + strand, within Psyr_4571 at 5435.288 kb on + strand, within Psyr_4571 at 5435.288 kb on + strand, within Psyr_4571 at 5435.369 kb on - strand, within Psyr_4571 at 5435.377 kb on - strand, within Psyr_4571 at 5435.441 kb on + strand, within Psyr_4571 at 5435.442 kb on - strand, within Psyr_4571 at 5435.515 kb on + strand, within Psyr_4571 at 5435.516 kb on - strand, within Psyr_4571 at 5435.599 kb on + strand, within Psyr_4571 at 5435.599 kb on + strand, within Psyr_4571 at 5435.599 kb on + strand, within Psyr_4571 at 5435.599 kb on + strand, within Psyr_4571 at 5435.599 kb on + strand, within Psyr_4571 at 5435.599 kb on + strand, within Psyr_4571 at 5435.599 kb on + strand, within Psyr_4571 at 5435.600 kb on - strand, within Psyr_4571 at 5435.600 kb on - strand, within Psyr_4571 at 5435.600 kb on - strand, within Psyr_4571 at 5435.801 kb on - strand, within Psyr_4571 at 5435.956 kb on + strand at 5435.956 kb on + strand at 5435.956 kb on + strand at 5435.956 kb on + strand at 5435.956 kb on + strand at 5435.956 kb on + strand at 5435.957 kb on - strand at 5435.957 kb on - strand at 5435.957 kb on - strand at 5435.957 kb on - strand at 5435.957 kb on - strand at 5435.982 kb on + strand at 5435.982 kb on + strand at 5435.982 kb on + strand at 5435.982 kb on + strand at 5435.982 kb on + strand at 5435.982 kb on + strand at 5435.982 kb on + strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.985 kb on + strand at 5435.985 kb on + strand at 5435.985 kb on + strand at 5435.985 kb on + strand at 5435.985 kb on + strand at 5435.985 kb on + strand at 5435.985 kb on + strand at 5435.985 kb on + strand at 5435.986 kb on - strand at 5435.986 kb on - strand at 5435.986 kb on - strand at 5435.986 kb on - strand at 5435.986 kb on - strand at 5436.442 kb on - strand, within Psyr_4572 at 5436.494 kb on + strand, within Psyr_4572 at 5436.494 kb on + strand, within Psyr_4572 at 5436.494 kb on + strand, within Psyr_4572 at 5436.494 kb on + strand, within Psyr_4572 at 5436.494 kb on + strand, within Psyr_4572 at 5436.494 kb on + strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.497 kb on + strand, within Psyr_4572 at 5436.497 kb on + strand, within Psyr_4572 at 5436.497 kb on + strand, within Psyr_4572 at 5436.497 kb on + strand, within Psyr_4572 at 5436.497 kb on + strand, within Psyr_4572 at 5436.498 kb on - strand, within Psyr_4572 at 5436.498 kb on - strand, within Psyr_4572 at 5436.498 kb on - strand, within Psyr_4572 at 5436.498 kb on - strand, within Psyr_4572 at 5436.498 kb on - strand, within Psyr_4572 at 5436.512 kb on + strand, within Psyr_4572 at 5436.512 kb on + strand, within Psyr_4572 at 5436.512 kb on + strand, within Psyr_4572 at 5436.512 kb on + strand, within Psyr_4572 at 5436.512 kb on + strand, within Psyr_4572 at 5436.512 kb on + strand, within Psyr_4572 at 5436.512 kb on + strand, within Psyr_4572 at 5436.513 kb on - strand, within Psyr_4572 at 5436.513 kb on - strand, within Psyr_4572 at 5436.513 kb on - strand, within Psyr_4572 at 5436.513 kb on - strand, within Psyr_4572 at 5436.513 kb on - strand, within Psyr_4572 at 5436.513 kb on - strand, within Psyr_4572 at 5436.671 kb on + strand, within Psyr_4572 at 5436.671 kb on + strand, within Psyr_4572 at 5436.671 kb on + strand, within Psyr_4572 at 5436.671 kb on + strand, within Psyr_4572 at 5436.671 kb on + strand, within Psyr_4572 at 5436.672 kb on - strand, within Psyr_4572 at 5436.672 kb on - strand, within Psyr_4572 at 5436.672 kb on - strand, within Psyr_4572 at 5436.674 kb on - strand, within Psyr_4572 at 5436.789 kb on - strand at 5436.803 kb on + strand at 5436.803 kb on + strand at 5436.804 kb on - strand at 5436.853 kb on + strand at 5436.854 kb on - strand at 5436.881 kb on + strand at 5436.935 kb on + strand at 5436.936 kb on - strand at 5436.936 kb on - strand at 5436.975 kb on + strand, within Psyr_4573 at 5436.975 kb on + strand, within Psyr_4573 at 5436.975 kb on + strand, within Psyr_4573 at 5436.975 kb on + strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.992 kb on - strand, within Psyr_4573 at 5437.106 kb on + strand, within Psyr_4573 at 5437.106 kb on + strand, within Psyr_4573 at 5437.106 kb on + strand, within Psyr_4573 at 5437.106 kb on + strand, within Psyr_4573 at 5437.106 kb on + strand, within Psyr_4573 at 5437.107 kb on - strand, within Psyr_4573 at 5437.107 kb on - strand, within Psyr_4573 at 5437.107 kb on - strand, within Psyr_4573 at 5437.107 kb on - strand, within Psyr_4573 at 5437.107 kb on - strand, within Psyr_4573 at 5437.107 kb on - strand, within Psyr_4573 at 5437.107 kb on - strand, within Psyr_4573 at 5437.107 kb on - strand, within Psyr_4573 at 5437.107 kb on - strand, within Psyr_4573 at 5437.107 kb on - strand, within Psyr_4573 at 5437.222 kb on + strand, within Psyr_4573 at 5437.222 kb on + strand, within Psyr_4573 at 5437.222 kb on + strand, within Psyr_4573 at 5437.222 kb on + strand, within Psyr_4573 at 5437.222 kb on + strand, within Psyr_4573 at 5437.222 kb on + strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.349 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Piperacillin 0.775 ug/ml remove 5,435,050 + -0.3 5,435,050 + -0.9 5,435,232 + Psyr_4571 0.18 +0.1 5,435,232 + Psyr_4571 0.18 +0.6 5,435,232 + Psyr_4571 0.18 +0.5 5,435,232 + Psyr_4571 0.18 -0.6 5,435,233 - Psyr_4571 0.18 +0.5 5,435,233 - Psyr_4571 0.18 +0.5 5,435,233 - Psyr_4571 0.18 +0.9 5,435,233 - Psyr_4571 0.18 -1.7 5,435,250 + Psyr_4571 0.20 +0.8 5,435,288 + Psyr_4571 0.24 +2.1 5,435,288 + Psyr_4571 0.24 -0.2 5,435,369 - Psyr_4571 0.33 +1.1 5,435,377 - Psyr_4571 0.34 +0.5 5,435,441 + Psyr_4571 0.41 +2.3 5,435,442 - Psyr_4571 0.41 +0.7 5,435,515 + Psyr_4571 0.49 +0.8 5,435,516 - Psyr_4571 0.49 -0.9 5,435,599 + Psyr_4571 0.58 -0.2 5,435,599 + Psyr_4571 0.58 -0.1 5,435,599 + Psyr_4571 0.58 -0.9 5,435,599 + Psyr_4571 0.58 -0.3 5,435,599 + Psyr_4571 0.58 -0.9 5,435,599 + Psyr_4571 0.58 +0.4 5,435,599 + Psyr_4571 0.58 +1.2 5,435,600 - Psyr_4571 0.58 -0.2 5,435,600 - Psyr_4571 0.58 -0.1 5,435,600 - Psyr_4571 0.58 -0.6 5,435,801 - Psyr_4571 0.80 +0.3 5,435,956 + +0.1 5,435,956 + -2.1 5,435,956 + +0.4 5,435,956 + -1.0 5,435,956 + +0.3 5,435,956 + +1.1 5,435,957 - +0.0 5,435,957 - +0.6 5,435,957 - +0.3 5,435,957 - +0.0 5,435,957 - +0.5 5,435,982 + +0.7 5,435,982 + +1.9 5,435,982 + -0.5 5,435,982 + -1.2 5,435,982 + -0.5 5,435,982 + -0.2 5,435,982 + +0.1 5,435,983 - +0.5 5,435,983 - +1.6 5,435,983 - +0.7 5,435,983 - +0.3 5,435,983 - -0.5 5,435,983 - +0.1 5,435,983 - +0.8 5,435,983 - +0.2 5,435,985 + -0.4 5,435,985 + +1.0 5,435,985 + +0.3 5,435,985 + -1.0 5,435,985 + -0.1 5,435,985 + +1.1 5,435,985 + -0.0 5,435,985 + +0.4 5,435,986 - +0.1 5,435,986 - +0.3 5,435,986 - -0.2 5,435,986 - +0.2 5,435,986 - +0.0 5,436,442 - Psyr_4572 0.52 +0.9 5,436,494 + Psyr_4572 0.58 +1.4 5,436,494 + Psyr_4572 0.58 +0.4 5,436,494 + Psyr_4572 0.58 -0.0 5,436,494 + Psyr_4572 0.58 -1.6 5,436,494 + Psyr_4572 0.58 -0.6 5,436,494 + Psyr_4572 0.58 -0.2 5,436,495 - Psyr_4572 0.58 -0.5 5,436,495 - Psyr_4572 0.58 +1.1 5,436,495 - Psyr_4572 0.58 +0.8 5,436,495 - Psyr_4572 0.58 -0.2 5,436,495 - Psyr_4572 0.58 -0.1 5,436,495 - Psyr_4572 0.58 +0.2 5,436,495 - Psyr_4572 0.58 -1.2 5,436,495 - Psyr_4572 0.58 -0.9 5,436,495 - Psyr_4572 0.58 -0.1 5,436,495 - Psyr_4572 0.58 +1.1 5,436,495 - Psyr_4572 0.58 -0.2 5,436,495 - Psyr_4572 0.58 -0.6 5,436,495 - Psyr_4572 0.58 +0.6 5,436,495 - Psyr_4572 0.58 +0.7 5,436,495 - Psyr_4572 0.58 +0.7 5,436,497 + Psyr_4572 0.59 -0.2 5,436,497 + Psyr_4572 0.59 +0.7 5,436,497 + Psyr_4572 0.59 +0.7 5,436,497 + Psyr_4572 0.59 +0.9 5,436,497 + Psyr_4572 0.59 -1.2 5,436,498 - Psyr_4572 0.59 -0.2 5,436,498 - Psyr_4572 0.59 +0.3 5,436,498 - Psyr_4572 0.59 +0.2 5,436,498 - Psyr_4572 0.59 +0.1 5,436,498 - Psyr_4572 0.59 -0.4 5,436,512 + Psyr_4572 0.61 -1.1 5,436,512 + Psyr_4572 0.61 +0.1 5,436,512 + Psyr_4572 0.61 -0.1 5,436,512 + Psyr_4572 0.61 +0.6 5,436,512 + Psyr_4572 0.61 +0.3 5,436,512 + Psyr_4572 0.61 +1.1 5,436,512 + Psyr_4572 0.61 +0.3 5,436,513 - Psyr_4572 0.61 +0.1 5,436,513 - Psyr_4572 0.61 +1.3 5,436,513 - Psyr_4572 0.61 -1.0 5,436,513 - Psyr_4572 0.61 -1.2 5,436,513 - Psyr_4572 0.61 +0.9 5,436,513 - Psyr_4572 0.61 -0.3 5,436,671 + Psyr_4572 0.81 +1.2 5,436,671 + Psyr_4572 0.81 +0.8 5,436,671 + Psyr_4572 0.81 +0.7 5,436,671 + Psyr_4572 0.81 -0.8 5,436,671 + Psyr_4572 0.81 +0.1 5,436,672 - Psyr_4572 0.81 -0.8 5,436,672 - Psyr_4572 0.81 +0.4 5,436,672 - Psyr_4572 0.81 -0.6 5,436,674 - Psyr_4572 0.81 +0.3 5,436,789 - +3.7 5,436,803 + -1.3 5,436,803 + -0.8 5,436,804 - -0.3 5,436,853 + +1.7 5,436,854 - +1.1 5,436,881 + +0.5 5,436,935 + +1.2 5,436,936 - +0.4 5,436,936 - +0.3 5,436,975 + Psyr_4573 0.16 -1.1 5,436,975 + Psyr_4573 0.16 +1.3 5,436,975 + Psyr_4573 0.16 +0.2 5,436,975 + Psyr_4573 0.16 +0.1 5,436,976 - Psyr_4573 0.16 +0.2 5,436,976 - Psyr_4573 0.16 -0.9 5,436,976 - Psyr_4573 0.16 -0.4 5,436,976 - Psyr_4573 0.16 -0.5 5,436,976 - Psyr_4573 0.16 -0.5 5,436,976 - Psyr_4573 0.16 +0.2 5,436,976 - Psyr_4573 0.16 -0.1 5,436,976 - Psyr_4573 0.16 -1.2 5,436,976 - Psyr_4573 0.16 +0.5 5,436,976 - Psyr_4573 0.16 -1.6 5,436,992 - Psyr_4573 0.21 +0.5 5,437,106 + Psyr_4573 0.55 +0.8 5,437,106 + Psyr_4573 0.55 +0.6 5,437,106 + Psyr_4573 0.55 +1.0 5,437,106 + Psyr_4573 0.55 +0.1 5,437,106 + Psyr_4573 0.55 -0.6 5,437,107 - Psyr_4573 0.55 +1.6 5,437,107 - Psyr_4573 0.55 -0.4 5,437,107 - Psyr_4573 0.55 +0.2 5,437,107 - Psyr_4573 0.55 -0.4 5,437,107 - Psyr_4573 0.55 -1.0 5,437,107 - Psyr_4573 0.55 +0.2 5,437,107 - Psyr_4573 0.55 -0.2 5,437,107 - Psyr_4573 0.55 +0.1 5,437,107 - Psyr_4573 0.55 -1.6 5,437,107 - Psyr_4573 0.55 -0.9 5,437,222 + Psyr_4573 0.89 +0.0 5,437,222 + Psyr_4573 0.89 +0.5 5,437,222 + Psyr_4573 0.89 +1.8 5,437,222 + Psyr_4573 0.89 +1.1 5,437,222 + Psyr_4573 0.89 +0.3 5,437,222 + Psyr_4573 0.89 -0.9 5,437,223 - Psyr_4573 0.89 -1.1 5,437,223 - Psyr_4573 0.89 -0.3 5,437,223 - Psyr_4573 0.89 +0.3 5,437,223 - Psyr_4573 0.89 +0.1 5,437,223 - Psyr_4573 0.89 -0.3 5,437,223 - Psyr_4573 0.89 -2.5 5,437,223 - Psyr_4573 0.89 +0.9 5,437,223 - Psyr_4573 0.89 -0.1 5,437,223 - Psyr_4573 0.89 -1.2 5,437,223 - Psyr_4573 0.89 -0.5 5,437,223 - Psyr_4573 0.89 +0.1 5,437,223 - Psyr_4573 0.89 -0.9 5,437,223 - Psyr_4573 0.89 +0.8 5,437,349 + -0.4
Or see this region's nucleotide sequence