Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4020

Experiment: KB with Piperacillin 0.775 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4018 and Psyr_4019 are separated by 358 nucleotidesPsyr_4019 and Psyr_4020 are separated by 73 nucleotidesPsyr_4020 and Psyr_4021 are separated by 180 nucleotidesPsyr_4021 and Psyr_4022 overlap by 4 nucleotides Psyr_4018: Psyr_4018 - Formyltetrahydrofolate deformylase, at 4,785,483 to 4,786,334 _4018 Psyr_4019: Psyr_4019 - H-NS family protein MvaT, at 4,786,693 to 4,787,073 _4019 Psyr_4020: Psyr_4020 - Exodeoxyribonuclease I subunit C, at 4,787,147 to 4,788,577 _4020 Psyr_4021: Psyr_4021 - RDD, at 4,788,758 to 4,789,483 _4021 Psyr_4022: Psyr_4022 - integral membrane protein, at 4,789,480 to 4,790,460 _4022 Position (kb) 4787 4788 4789Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4786.294 kb on - strandat 4786.372 kb on - strandat 4786.396 kb on + strandat 4786.397 kb on - strandat 4786.503 kb on - strandat 4786.505 kb on + strandat 4786.506 kb on - strandat 4786.517 kb on + strandat 4786.519 kb on + strandat 4786.581 kb on + strandat 4786.581 kb on + strandat 4786.582 kb on - strandat 4786.589 kb on + strandat 4786.611 kb on + strandat 4786.634 kb on + strandat 4786.634 kb on + strandat 4786.647 kb on - strandat 4786.659 kb on + strandat 4786.681 kb on + strandat 4786.681 kb on + strandat 4786.682 kb on - strandat 4786.682 kb on - strandat 4786.682 kb on - strandat 4786.682 kb on - strandat 4786.682 kb on - strandat 4786.682 kb on - strandat 4786.682 kb on - strandat 4786.682 kb on - strandat 4786.682 kb on - strandat 4786.952 kb on - strand, within Psyr_4019at 4786.952 kb on - strand, within Psyr_4019at 4787.071 kb on + strandat 4787.148 kb on + strandat 4787.362 kb on + strand, within Psyr_4020at 4787.381 kb on + strand, within Psyr_4020at 4787.499 kb on + strand, within Psyr_4020at 4787.499 kb on + strand, within Psyr_4020at 4787.499 kb on + strand, within Psyr_4020at 4787.500 kb on - strand, within Psyr_4020at 4787.500 kb on - strand, within Psyr_4020at 4787.501 kb on + strand, within Psyr_4020at 4787.501 kb on + strand, within Psyr_4020at 4787.501 kb on + strand, within Psyr_4020at 4787.501 kb on + strand, within Psyr_4020at 4787.501 kb on + strand, within Psyr_4020at 4787.502 kb on - strand, within Psyr_4020at 4787.502 kb on - strand, within Psyr_4020at 4787.502 kb on - strand, within Psyr_4020at 4787.502 kb on - strand, within Psyr_4020at 4787.502 kb on - strand, within Psyr_4020at 4787.502 kb on - strand, within Psyr_4020at 4787.548 kb on - strand, within Psyr_4020at 4787.693 kb on + strand, within Psyr_4020at 4787.693 kb on + strand, within Psyr_4020at 4787.693 kb on + strand, within Psyr_4020at 4787.694 kb on - strand, within Psyr_4020at 4787.695 kb on + strand, within Psyr_4020at 4787.695 kb on + strand, within Psyr_4020at 4787.695 kb on + strand, within Psyr_4020at 4787.695 kb on + strand, within Psyr_4020at 4787.696 kb on - strand, within Psyr_4020at 4787.696 kb on - strand, within Psyr_4020at 4787.696 kb on - strand, within Psyr_4020at 4787.752 kb on + strand, within Psyr_4020at 4787.752 kb on + strand, within Psyr_4020at 4787.752 kb on + strand, within Psyr_4020at 4787.753 kb on - strand, within Psyr_4020at 4787.753 kb on - strand, within Psyr_4020at 4787.754 kb on + strand, within Psyr_4020at 4787.755 kb on - strand, within Psyr_4020at 4787.755 kb on - strand, within Psyr_4020at 4787.756 kb on + strand, within Psyr_4020at 4787.756 kb on + strand, within Psyr_4020at 4787.756 kb on + strand, within Psyr_4020at 4787.756 kb on + strand, within Psyr_4020at 4787.757 kb on - strand, within Psyr_4020at 4787.772 kb on - strand, within Psyr_4020at 4787.772 kb on - strand, within Psyr_4020at 4787.843 kb on - strand, within Psyr_4020at 4787.881 kb on - strand, within Psyr_4020at 4787.911 kb on + strand, within Psyr_4020at 4787.912 kb on - strand, within Psyr_4020at 4787.912 kb on - strand, within Psyr_4020at 4787.912 kb on - strand, within Psyr_4020at 4787.912 kb on - strand, within Psyr_4020at 4787.959 kb on + strand, within Psyr_4020at 4787.960 kb on - strand, within Psyr_4020at 4787.979 kb on + strand, within Psyr_4020at 4787.979 kb on + strand, within Psyr_4020at 4787.980 kb on - strand, within Psyr_4020at 4787.980 kb on - strand, within Psyr_4020at 4787.985 kb on + strand, within Psyr_4020at 4788.163 kb on - strand, within Psyr_4020at 4788.225 kb on + strand, within Psyr_4020at 4788.225 kb on + strand, within Psyr_4020at 4788.291 kb on + strand, within Psyr_4020at 4788.307 kb on + strand, within Psyr_4020at 4788.332 kb on + strand, within Psyr_4020at 4788.332 kb on + strand, within Psyr_4020at 4788.332 kb on + strand, within Psyr_4020at 4788.332 kb on + strand, within Psyr_4020at 4788.332 kb on + strand, within Psyr_4020at 4788.333 kb on - strand, within Psyr_4020at 4788.333 kb on - strand, within Psyr_4020at 4788.333 kb on - strand, within Psyr_4020at 4788.683 kb on + strandat 4788.684 kb on - strandat 4788.702 kb on + strandat 4788.702 kb on + strandat 4788.702 kb on + strandat 4788.702 kb on + strandat 4788.702 kb on + strandat 4788.717 kb on - strandat 4788.720 kb on + strandat 4788.720 kb on + strandat 4788.721 kb on - strandat 4788.848 kb on - strand, within Psyr_4021at 4788.848 kb on - strand, within Psyr_4021at 4788.848 kb on - strand, within Psyr_4021at 4788.952 kb on - strand, within Psyr_4021at 4789.010 kb on + strand, within Psyr_4021at 4789.010 kb on + strand, within Psyr_4021at 4789.010 kb on + strand, within Psyr_4021at 4789.011 kb on - strand, within Psyr_4021at 4789.011 kb on - strand, within Psyr_4021at 4789.011 kb on - strand, within Psyr_4021at 4789.011 kb on - strand, within Psyr_4021at 4789.011 kb on - strand, within Psyr_4021at 4789.011 kb on - strand, within Psyr_4021at 4789.011 kb on - strand, within Psyr_4021at 4789.180 kb on + strand, within Psyr_4021at 4789.180 kb on + strand, within Psyr_4021at 4789.180 kb on + strand, within Psyr_4021at 4789.181 kb on - strand, within Psyr_4021at 4789.181 kb on - strand, within Psyr_4021at 4789.181 kb on - strand, within Psyr_4021at 4789.244 kb on + strand, within Psyr_4021at 4789.245 kb on - strand, within Psyr_4021at 4789.245 kb on - strand, within Psyr_4021at 4789.446 kb on + strandat 4789.446 kb on + strandat 4789.446 kb on + strandat 4789.477 kb on + strandat 4789.477 kb on + strandat 4789.478 kb on - strandat 4789.478 kb on - strandat 4789.478 kb on - strandat 4789.478 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Piperacillin 0.775 ug/ml
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4,786,294 - +0.3
4,786,372 - -2.3
4,786,396 + +0.8
4,786,397 - -0.3
4,786,503 - +3.5
4,786,505 + -0.1
4,786,506 - -1.3
4,786,517 + +0.6
4,786,519 + +0.5
4,786,581 + -0.2
4,786,581 + -0.4
4,786,582 - -0.2
4,786,589 + +0.3
4,786,611 + +1.4
4,786,634 + -0.8
4,786,634 + +0.3
4,786,647 - +0.6
4,786,659 + -0.5
4,786,681 + -0.3
4,786,681 + -0.6
4,786,682 - -0.6
4,786,682 - -0.5
4,786,682 - +0.0
4,786,682 - +0.1
4,786,682 - -0.5
4,786,682 - +0.0
4,786,682 - -0.8
4,786,682 - -0.6
4,786,682 - -0.5
4,786,952 - Psyr_4019 0.68 -0.8
4,786,952 - Psyr_4019 0.68 -0.6
4,787,071 + +0.2
4,787,148 + -1.9
4,787,362 + Psyr_4020 0.15 -0.8
4,787,381 + Psyr_4020 0.16 -0.4
4,787,499 + Psyr_4020 0.25 -1.6
4,787,499 + Psyr_4020 0.25 +0.3
4,787,499 + Psyr_4020 0.25 +0.0
4,787,500 - Psyr_4020 0.25 +0.0
4,787,500 - Psyr_4020 0.25 -1.6
4,787,501 + Psyr_4020 0.25 -0.7
4,787,501 + Psyr_4020 0.25 -1.3
4,787,501 + Psyr_4020 0.25 -0.7
4,787,501 + Psyr_4020 0.25 -2.5
4,787,501 + Psyr_4020 0.25 -0.3
4,787,502 - Psyr_4020 0.25 +0.0
4,787,502 - Psyr_4020 0.25 +0.0
4,787,502 - Psyr_4020 0.25 +0.1
4,787,502 - Psyr_4020 0.25 -0.2
4,787,502 - Psyr_4020 0.25 +0.0
4,787,502 - Psyr_4020 0.25 +0.2
4,787,548 - Psyr_4020 0.28 -1.6
4,787,693 + Psyr_4020 0.38 +0.4
4,787,693 + Psyr_4020 0.38 -1.5
4,787,693 + Psyr_4020 0.38 -2.2
4,787,694 - Psyr_4020 0.38 -0.6
4,787,695 + Psyr_4020 0.38 -0.6
4,787,695 + Psyr_4020 0.38 +0.4
4,787,695 + Psyr_4020 0.38 +0.8
4,787,695 + Psyr_4020 0.38 -0.3
4,787,696 - Psyr_4020 0.38 +0.1
4,787,696 - Psyr_4020 0.38 -1.3
4,787,696 - Psyr_4020 0.38 +0.8
4,787,752 + Psyr_4020 0.42 -1.1
4,787,752 + Psyr_4020 0.42 -0.6
4,787,752 + Psyr_4020 0.42 -1.1
4,787,753 - Psyr_4020 0.42 +1.0
4,787,753 - Psyr_4020 0.42 +0.6
4,787,754 + Psyr_4020 0.42 -2.3
4,787,755 - Psyr_4020 0.42 -1.3
4,787,755 - Psyr_4020 0.42 -1.1
4,787,756 + Psyr_4020 0.43 -0.3
4,787,756 + Psyr_4020 0.43 +0.6
4,787,756 + Psyr_4020 0.43 -0.9
4,787,756 + Psyr_4020 0.43 -1.3
4,787,757 - Psyr_4020 0.43 +0.3
4,787,772 - Psyr_4020 0.44 -0.4
4,787,772 - Psyr_4020 0.44 +0.6
4,787,843 - Psyr_4020 0.49 +0.3
4,787,881 - Psyr_4020 0.51 +0.0
4,787,911 + Psyr_4020 0.53 -0.8
4,787,912 - Psyr_4020 0.53 +0.2
4,787,912 - Psyr_4020 0.53 +1.6
4,787,912 - Psyr_4020 0.53 +0.5
4,787,912 - Psyr_4020 0.53 -0.3
4,787,959 + Psyr_4020 0.57 +0.0
4,787,960 - Psyr_4020 0.57 -0.9
4,787,979 + Psyr_4020 0.58 -0.7
4,787,979 + Psyr_4020 0.58 +0.3
4,787,980 - Psyr_4020 0.58 +1.0
4,787,980 - Psyr_4020 0.58 +0.0
4,787,985 + Psyr_4020 0.59 -0.2
4,788,163 - Psyr_4020 0.71 -0.6
4,788,225 + Psyr_4020 0.75 +1.6
4,788,225 + Psyr_4020 0.75 +0.0
4,788,291 + Psyr_4020 0.80 -0.2
4,788,307 + Psyr_4020 0.81 -0.6
4,788,332 + Psyr_4020 0.83 +1.6
4,788,332 + Psyr_4020 0.83 +1.0
4,788,332 + Psyr_4020 0.83 +0.6
4,788,332 + Psyr_4020 0.83 +0.0
4,788,332 + Psyr_4020 0.83 +1.0
4,788,333 - Psyr_4020 0.83 +2.8
4,788,333 - Psyr_4020 0.83 -0.6
4,788,333 - Psyr_4020 0.83 -0.2
4,788,683 + +1.0
4,788,684 - -1.2
4,788,702 + -2.2
4,788,702 + +0.0
4,788,702 + -1.3
4,788,702 + -0.5
4,788,702 + -0.5
4,788,717 - -1.0
4,788,720 + +0.2
4,788,720 + +1.5
4,788,721 - +0.8
4,788,848 - Psyr_4021 0.12 +1.0
4,788,848 - Psyr_4021 0.12 -0.6
4,788,848 - Psyr_4021 0.12 -0.1
4,788,952 - Psyr_4021 0.27 -0.4
4,789,010 + Psyr_4021 0.35 -0.1
4,789,010 + Psyr_4021 0.35 +0.1
4,789,010 + Psyr_4021 0.35 -0.3
4,789,011 - Psyr_4021 0.35 +1.0
4,789,011 - Psyr_4021 0.35 +1.0
4,789,011 - Psyr_4021 0.35 +1.0
4,789,011 - Psyr_4021 0.35 +0.5
4,789,011 - Psyr_4021 0.35 +0.8
4,789,011 - Psyr_4021 0.35 +0.1
4,789,011 - Psyr_4021 0.35 -0.9
4,789,180 + Psyr_4021 0.58 +0.6
4,789,180 + Psyr_4021 0.58 +1.1
4,789,180 + Psyr_4021 0.58 +1.2
4,789,181 - Psyr_4021 0.58 -0.1
4,789,181 - Psyr_4021 0.58 +0.8
4,789,181 - Psyr_4021 0.58 +0.4
4,789,244 + Psyr_4021 0.67 -0.6
4,789,245 - Psyr_4021 0.67 +0.4
4,789,245 - Psyr_4021 0.67 -1.0
4,789,446 + +0.7
4,789,446 + +0.4
4,789,446 + -1.0
4,789,477 + -0.4
4,789,477 + -1.0
4,789,478 - +0.3
4,789,478 - +1.5
4,789,478 - +0.3
4,789,478 - +0.5

Or see this region's nucleotide sequence