Experiment: KB with Piperacillin 0.775 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3180 and Psyr_3181 are separated by 48 nucleotides Psyr_3181 and Psyr_3182 are separated by 101 nucleotides Psyr_3182 and Psyr_3183 are separated by 117 nucleotides
Psyr_3180: Psyr_3180 - Leucyl/phenylalanyl-tRNA--protein transferase, at 3,808,879 to 3,809,568
_3180
Psyr_3181: Psyr_3181 - Arginyltransferase, at 3,809,617 to 3,810,324
_3181
Psyr_3182: Psyr_3182 - bacterial translation initiation factor 1 (bIF-1), at 3,810,426 to 3,810,644
_3182
Psyr_3183: Psyr_3183 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 3,810,762 to 3,813,035
_3183
Position (kb)
3810
3811 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3809.466 kb on + strand, within Psyr_3180 at 3809.466 kb on + strand, within Psyr_3180 at 3809.467 kb on - strand, within Psyr_3180 at 3809.467 kb on - strand, within Psyr_3180 at 3809.467 kb on - strand, within Psyr_3180 at 3809.467 kb on - strand, within Psyr_3180 at 3809.467 kb on - strand, within Psyr_3180 at 3809.509 kb on + strand at 3809.579 kb on + strand at 3809.579 kb on + strand at 3809.580 kb on - strand at 3809.580 kb on - strand at 3809.645 kb on - strand at 3809.672 kb on - strand at 3809.729 kb on + strand, within Psyr_3181 at 3809.738 kb on - strand, within Psyr_3181 at 3809.738 kb on - strand, within Psyr_3181 at 3809.786 kb on - strand, within Psyr_3181 at 3809.932 kb on + strand, within Psyr_3181 at 3809.953 kb on + strand, within Psyr_3181 at 3809.953 kb on + strand, within Psyr_3181 at 3809.953 kb on + strand, within Psyr_3181 at 3809.953 kb on + strand, within Psyr_3181 at 3809.953 kb on + strand, within Psyr_3181 at 3809.954 kb on - strand, within Psyr_3181 at 3809.955 kb on + strand, within Psyr_3181 at 3809.955 kb on + strand, within Psyr_3181 at 3809.956 kb on - strand, within Psyr_3181 at 3810.049 kb on + strand, within Psyr_3181 at 3810.232 kb on + strand, within Psyr_3181 at 3810.262 kb on + strand at 3810.262 kb on + strand at 3810.262 kb on + strand at 3810.319 kb on + strand at 3810.689 kb on - strand at 3810.689 kb on - strand at 3810.938 kb on - strand at 3810.987 kb on + strand at 3811.402 kb on + strand, within Psyr_3183 at 3811.448 kb on + strand, within Psyr_3183 at 3811.450 kb on + strand, within Psyr_3183 at 3811.450 kb on + strand, within Psyr_3183 at 3811.450 kb on + strand, within Psyr_3183 at 3811.450 kb on + strand, within Psyr_3183 at 3811.450 kb on + strand, within Psyr_3183 at 3811.642 kb on - strand, within Psyr_3183
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Piperacillin 0.775 ug/ml remove 3,809,466 + Psyr_3180 0.85 -0.7 3,809,466 + Psyr_3180 0.85 -0.8 3,809,467 - Psyr_3180 0.85 -0.6 3,809,467 - Psyr_3180 0.85 -1.0 3,809,467 - Psyr_3180 0.85 +0.1 3,809,467 - Psyr_3180 0.85 +1.8 3,809,467 - Psyr_3180 0.85 -0.6 3,809,509 + +0.8 3,809,579 + +0.4 3,809,579 + +0.2 3,809,580 - -1.2 3,809,580 - -0.0 3,809,645 - +0.2 3,809,672 - -0.2 3,809,729 + Psyr_3181 0.16 +0.6 3,809,738 - Psyr_3181 0.17 +0.1 3,809,738 - Psyr_3181 0.17 +0.5 3,809,786 - Psyr_3181 0.24 -0.8 3,809,932 + Psyr_3181 0.44 -1.2 3,809,953 + Psyr_3181 0.47 +3.6 3,809,953 + Psyr_3181 0.47 -0.1 3,809,953 + Psyr_3181 0.47 +0.4 3,809,953 + Psyr_3181 0.47 +1.8 3,809,953 + Psyr_3181 0.47 +0.5 3,809,954 - Psyr_3181 0.48 -0.2 3,809,955 + Psyr_3181 0.48 -0.8 3,809,955 + Psyr_3181 0.48 +1.3 3,809,956 - Psyr_3181 0.48 +0.2 3,810,049 + Psyr_3181 0.61 -0.3 3,810,232 + Psyr_3181 0.87 +0.3 3,810,262 + +0.5 3,810,262 + +0.4 3,810,262 + +1.4 3,810,319 + -0.2 3,810,689 - +1.8 3,810,689 - -0.2 3,810,938 - +0.7 3,810,987 + -0.2 3,811,402 + Psyr_3183 0.28 +0.4 3,811,448 + Psyr_3183 0.30 +1.1 3,811,450 + Psyr_3183 0.30 +0.1 3,811,450 + Psyr_3183 0.30 -0.6 3,811,450 + Psyr_3183 0.30 -0.2 3,811,450 + Psyr_3183 0.30 -0.2 3,811,450 + Psyr_3183 0.30 -0.1 3,811,642 - Psyr_3183 0.39 +0.4
Or see this region's nucleotide sequence