Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3182

Experiment: KB with Piperacillin 0.775 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3180 and Psyr_3181 are separated by 48 nucleotidesPsyr_3181 and Psyr_3182 are separated by 101 nucleotidesPsyr_3182 and Psyr_3183 are separated by 117 nucleotides Psyr_3180: Psyr_3180 - Leucyl/phenylalanyl-tRNA--protein transferase, at 3,808,879 to 3,809,568 _3180 Psyr_3181: Psyr_3181 - Arginyltransferase, at 3,809,617 to 3,810,324 _3181 Psyr_3182: Psyr_3182 - bacterial translation initiation factor 1 (bIF-1), at 3,810,426 to 3,810,644 _3182 Psyr_3183: Psyr_3183 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 3,810,762 to 3,813,035 _3183 Position (kb) 3810 3811Strain fitness (log2 ratio) -1 0 1 2 3at 3809.466 kb on + strand, within Psyr_3180at 3809.466 kb on + strand, within Psyr_3180at 3809.467 kb on - strand, within Psyr_3180at 3809.467 kb on - strand, within Psyr_3180at 3809.467 kb on - strand, within Psyr_3180at 3809.467 kb on - strand, within Psyr_3180at 3809.467 kb on - strand, within Psyr_3180at 3809.509 kb on + strandat 3809.579 kb on + strandat 3809.579 kb on + strandat 3809.580 kb on - strandat 3809.580 kb on - strandat 3809.645 kb on - strandat 3809.672 kb on - strandat 3809.729 kb on + strand, within Psyr_3181at 3809.738 kb on - strand, within Psyr_3181at 3809.738 kb on - strand, within Psyr_3181at 3809.786 kb on - strand, within Psyr_3181at 3809.932 kb on + strand, within Psyr_3181at 3809.953 kb on + strand, within Psyr_3181at 3809.953 kb on + strand, within Psyr_3181at 3809.953 kb on + strand, within Psyr_3181at 3809.953 kb on + strand, within Psyr_3181at 3809.953 kb on + strand, within Psyr_3181at 3809.954 kb on - strand, within Psyr_3181at 3809.955 kb on + strand, within Psyr_3181at 3809.955 kb on + strand, within Psyr_3181at 3809.956 kb on - strand, within Psyr_3181at 3810.049 kb on + strand, within Psyr_3181at 3810.232 kb on + strand, within Psyr_3181at 3810.262 kb on + strandat 3810.262 kb on + strandat 3810.262 kb on + strandat 3810.319 kb on + strandat 3810.689 kb on - strandat 3810.689 kb on - strandat 3810.938 kb on - strandat 3810.987 kb on + strandat 3811.402 kb on + strand, within Psyr_3183at 3811.448 kb on + strand, within Psyr_3183at 3811.450 kb on + strand, within Psyr_3183at 3811.450 kb on + strand, within Psyr_3183at 3811.450 kb on + strand, within Psyr_3183at 3811.450 kb on + strand, within Psyr_3183at 3811.450 kb on + strand, within Psyr_3183at 3811.642 kb on - strand, within Psyr_3183

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Piperacillin 0.775 ug/ml
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3,809,466 + Psyr_3180 0.85 -0.7
3,809,466 + Psyr_3180 0.85 -0.8
3,809,467 - Psyr_3180 0.85 -0.6
3,809,467 - Psyr_3180 0.85 -1.0
3,809,467 - Psyr_3180 0.85 +0.1
3,809,467 - Psyr_3180 0.85 +1.8
3,809,467 - Psyr_3180 0.85 -0.6
3,809,509 + +0.8
3,809,579 + +0.4
3,809,579 + +0.2
3,809,580 - -1.2
3,809,580 - -0.0
3,809,645 - +0.2
3,809,672 - -0.2
3,809,729 + Psyr_3181 0.16 +0.6
3,809,738 - Psyr_3181 0.17 +0.1
3,809,738 - Psyr_3181 0.17 +0.5
3,809,786 - Psyr_3181 0.24 -0.8
3,809,932 + Psyr_3181 0.44 -1.2
3,809,953 + Psyr_3181 0.47 +3.6
3,809,953 + Psyr_3181 0.47 -0.1
3,809,953 + Psyr_3181 0.47 +0.4
3,809,953 + Psyr_3181 0.47 +1.8
3,809,953 + Psyr_3181 0.47 +0.5
3,809,954 - Psyr_3181 0.48 -0.2
3,809,955 + Psyr_3181 0.48 -0.8
3,809,955 + Psyr_3181 0.48 +1.3
3,809,956 - Psyr_3181 0.48 +0.2
3,810,049 + Psyr_3181 0.61 -0.3
3,810,232 + Psyr_3181 0.87 +0.3
3,810,262 + +0.5
3,810,262 + +0.4
3,810,262 + +1.4
3,810,319 + -0.2
3,810,689 - +1.8
3,810,689 - -0.2
3,810,938 - +0.7
3,810,987 + -0.2
3,811,402 + Psyr_3183 0.28 +0.4
3,811,448 + Psyr_3183 0.30 +1.1
3,811,450 + Psyr_3183 0.30 +0.1
3,811,450 + Psyr_3183 0.30 -0.6
3,811,450 + Psyr_3183 0.30 -0.2
3,811,450 + Psyr_3183 0.30 -0.2
3,811,450 + Psyr_3183 0.30 -0.1
3,811,642 - Psyr_3183 0.39 +0.4

Or see this region's nucleotide sequence