Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1094

Experiment: KB with Piperacillin 0.775 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1093 and Psyr_1094 are separated by 128 nucleotidesPsyr_1094 and Psyr_1095 are separated by 411 nucleotides Psyr_1093: Psyr_1093 - permease YjgP/YjgQ, at 1,235,580 to 1,236,641 _1093 Psyr_1094: Psyr_1094 - cold-shock DNA-binding protein family, at 1,236,770 to 1,236,982 _1094 Psyr_1095: Psyr_1095 - Glycine cleavage system T protein, at 1,237,394 to 1,238,518 _1095 Position (kb) 1236 1237Strain fitness (log2 ratio) -2 -1 0 1 2at 1236.749 kb on + strandat 1236.749 kb on + strandat 1236.750 kb on - strandat 1236.750 kb on - strandat 1236.890 kb on + strand, within Psyr_1094at 1236.890 kb on + strand, within Psyr_1094at 1236.891 kb on - strand, within Psyr_1094at 1236.891 kb on - strand, within Psyr_1094at 1236.891 kb on - strand, within Psyr_1094at 1236.922 kb on + strand, within Psyr_1094at 1236.922 kb on + strand, within Psyr_1094at 1236.923 kb on - strand, within Psyr_1094at 1237.063 kb on + strandat 1237.064 kb on - strandat 1237.072 kb on + strandat 1237.073 kb on - strandat 1237.099 kb on + strandat 1237.171 kb on + strandat 1237.171 kb on + strandat 1237.171 kb on + strandat 1237.172 kb on - strandat 1237.172 kb on - strandat 1237.216 kb on + strandat 1237.217 kb on - strandat 1237.217 kb on - strandat 1237.233 kb on + strandat 1237.233 kb on + strandat 1237.234 kb on - strandat 1237.275 kb on - strandat 1237.277 kb on - strandat 1237.277 kb on - strandat 1237.293 kb on + strandat 1237.294 kb on - strandat 1237.294 kb on - strandat 1237.294 kb on - strandat 1237.295 kb on + strandat 1237.295 kb on + strandat 1237.296 kb on - strandat 1237.296 kb on - strandat 1237.296 kb on - strandat 1237.296 kb on - strandat 1237.323 kb on - strandat 1237.408 kb on - strandat 1237.408 kb on - strandat 1237.483 kb on + strandat 1237.484 kb on - strandat 1237.484 kb on - strandat 1237.497 kb on + strandat 1237.505 kb on - strandat 1237.604 kb on - strand, within Psyr_1095at 1237.789 kb on + strand, within Psyr_1095at 1237.790 kb on - strand, within Psyr_1095at 1237.800 kb on + strand, within Psyr_1095at 1237.852 kb on + strand, within Psyr_1095at 1237.962 kb on + strand, within Psyr_1095at 1237.962 kb on + strand, within Psyr_1095at 1237.962 kb on + strand, within Psyr_1095at 1237.963 kb on - strand, within Psyr_1095at 1237.963 kb on - strand, within Psyr_1095at 1237.963 kb on - strand, within Psyr_1095at 1237.963 kb on - strand, within Psyr_1095at 1237.963 kb on - strand, within Psyr_1095at 1237.963 kb on - strand, within Psyr_1095at 1237.963 kb on - strand, within Psyr_1095

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Piperacillin 0.775 ug/ml
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1,236,749 + -1.3
1,236,749 + -0.6
1,236,750 - -0.3
1,236,750 - -0.0
1,236,890 + Psyr_1094 0.56 -1.5
1,236,890 + Psyr_1094 0.56 +0.2
1,236,891 - Psyr_1094 0.57 +0.5
1,236,891 - Psyr_1094 0.57 -0.6
1,236,891 - Psyr_1094 0.57 -2.0
1,236,922 + Psyr_1094 0.71 -0.0
1,236,922 + Psyr_1094 0.71 -2.3
1,236,923 - Psyr_1094 0.72 -1.2
1,237,063 + -1.0
1,237,064 - -0.3
1,237,072 + +0.2
1,237,073 - -0.9
1,237,099 + -0.7
1,237,171 + -0.5
1,237,171 + -2.1
1,237,171 + -0.0
1,237,172 - -0.1
1,237,172 - +0.8
1,237,216 + -0.7
1,237,217 - -0.3
1,237,217 - +0.8
1,237,233 + +0.4
1,237,233 + +0.8
1,237,234 - -1.2
1,237,275 - +0.7
1,237,277 - -0.6
1,237,277 - +1.3
1,237,293 + -1.0
1,237,294 - -0.8
1,237,294 - +0.8
1,237,294 - +0.2
1,237,295 + +0.2
1,237,295 + +2.0
1,237,296 - +1.6
1,237,296 - +0.4
1,237,296 - +0.3
1,237,296 - +0.6
1,237,323 - +0.2
1,237,408 - -0.4
1,237,408 - -0.1
1,237,483 + +1.3
1,237,484 - +0.1
1,237,484 - +0.0
1,237,497 + -1.1
1,237,505 - +0.2
1,237,604 - Psyr_1095 0.19 -0.0
1,237,789 + Psyr_1095 0.35 -2.6
1,237,790 - Psyr_1095 0.35 -1.0
1,237,800 + Psyr_1095 0.36 -0.6
1,237,852 + Psyr_1095 0.41 -0.4
1,237,962 + Psyr_1095 0.50 +0.4
1,237,962 + Psyr_1095 0.50 -0.2
1,237,962 + Psyr_1095 0.50 -0.2
1,237,963 - Psyr_1095 0.51 -0.4
1,237,963 - Psyr_1095 0.51 -0.0
1,237,963 - Psyr_1095 0.51 +0.4
1,237,963 - Psyr_1095 0.51 +0.6
1,237,963 - Psyr_1095 0.51 +0.4
1,237,963 - Psyr_1095 0.51 -0.0
1,237,963 - Psyr_1095 0.51 +0.1

Or see this region's nucleotide sequence