Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0940

Experiment: KB with Piperacillin 0.775 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0938 and Psyr_0939 are separated by 121 nucleotidesPsyr_0939 and Psyr_0940 overlap by 79 nucleotidesPsyr_0940 and Psyr_0941 are separated by 127 nucleotides Psyr_0938: Psyr_0938 - hypothetical protein, at 1,074,450 to 1,075,661 _0938 Psyr_0939: Psyr_0939 - CDS, at 1,075,783 to 1,076,142 _0939 Psyr_0940: Psyr_0940 - CDS, at 1,076,064 to 1,076,363 _0940 Psyr_0941: Psyr_0941 - Conserved hypothetical protein 92, at 1,076,491 to 1,077,591 _0941 Position (kb) 1076 1077Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1075.081 kb on + strand, within Psyr_0938at 1075.082 kb on - strand, within Psyr_0938at 1075.082 kb on - strand, within Psyr_0938at 1075.176 kb on + strand, within Psyr_0938at 1075.176 kb on + strand, within Psyr_0938at 1075.176 kb on + strand, within Psyr_0938at 1075.176 kb on + strand, within Psyr_0938at 1075.177 kb on - strand, within Psyr_0938at 1075.177 kb on - strand, within Psyr_0938at 1075.177 kb on - strand, within Psyr_0938at 1075.191 kb on - strand, within Psyr_0938at 1075.295 kb on + strand, within Psyr_0938at 1075.296 kb on - strand, within Psyr_0938at 1075.296 kb on - strand, within Psyr_0938at 1075.308 kb on + strand, within Psyr_0938at 1075.308 kb on + strand, within Psyr_0938at 1075.384 kb on - strand, within Psyr_0938at 1075.384 kb on - strand, within Psyr_0938at 1075.389 kb on + strand, within Psyr_0938at 1075.389 kb on + strand, within Psyr_0938at 1075.390 kb on - strand, within Psyr_0938at 1075.421 kb on + strand, within Psyr_0938at 1075.422 kb on - strand, within Psyr_0938at 1075.446 kb on + strand, within Psyr_0938at 1075.446 kb on + strand, within Psyr_0938at 1075.447 kb on - strand, within Psyr_0938at 1075.447 kb on - strand, within Psyr_0938at 1075.458 kb on - strand, within Psyr_0938at 1075.499 kb on - strand, within Psyr_0938at 1075.499 kb on - strand, within Psyr_0938at 1075.557 kb on + strandat 1075.560 kb on - strandat 1075.560 kb on - strandat 1075.568 kb on + strandat 1075.634 kb on + strandat 1075.638 kb on - strandat 1075.649 kb on - strandat 1075.649 kb on - strandat 1075.690 kb on + strandat 1075.755 kb on + strandat 1075.755 kb on + strandat 1075.755 kb on + strandat 1075.756 kb on - strandat 1075.874 kb on + strand, within Psyr_0939at 1075.874 kb on + strand, within Psyr_0939at 1075.874 kb on + strand, within Psyr_0939at 1075.874 kb on + strand, within Psyr_0939at 1075.874 kb on + strand, within Psyr_0939at 1075.874 kb on + strand, within Psyr_0939at 1075.875 kb on - strand, within Psyr_0939at 1075.919 kb on + strand, within Psyr_0939at 1075.920 kb on - strand, within Psyr_0939at 1075.920 kb on - strand, within Psyr_0939at 1075.920 kb on - strand, within Psyr_0939at 1075.982 kb on + strand, within Psyr_0939at 1076.019 kb on + strand, within Psyr_0939at 1076.031 kb on + strand, within Psyr_0939at 1076.031 kb on + strand, within Psyr_0939at 1076.032 kb on - strand, within Psyr_0939at 1076.088 kb on + strandat 1076.088 kb on + strandat 1076.089 kb on - strandat 1076.159 kb on + strand, within Psyr_0940at 1076.159 kb on + strand, within Psyr_0940at 1076.199 kb on + strand, within Psyr_0940at 1076.199 kb on + strand, within Psyr_0940at 1076.199 kb on + strand, within Psyr_0940at 1076.199 kb on + strand, within Psyr_0940at 1076.199 kb on + strand, within Psyr_0940at 1076.200 kb on - strand, within Psyr_0940at 1076.200 kb on - strand, within Psyr_0940at 1076.200 kb on - strand, within Psyr_0940at 1076.200 kb on - strand, within Psyr_0940at 1076.223 kb on + strand, within Psyr_0940at 1076.223 kb on + strand, within Psyr_0940at 1076.223 kb on + strand, within Psyr_0940at 1076.223 kb on + strand, within Psyr_0940at 1076.223 kb on + strand, within Psyr_0940at 1076.224 kb on - strand, within Psyr_0940at 1076.224 kb on - strand, within Psyr_0940at 1076.224 kb on - strand, within Psyr_0940at 1076.224 kb on - strand, within Psyr_0940at 1076.224 kb on - strand, within Psyr_0940at 1076.224 kb on - strand, within Psyr_0940at 1076.224 kb on - strand, within Psyr_0940at 1076.267 kb on + strand, within Psyr_0940at 1076.267 kb on + strand, within Psyr_0940at 1076.268 kb on - strand, within Psyr_0940at 1076.268 kb on - strand, within Psyr_0940at 1076.297 kb on + strand, within Psyr_0940at 1076.297 kb on + strand, within Psyr_0940at 1076.297 kb on + strand, within Psyr_0940at 1076.298 kb on - strand, within Psyr_0940at 1076.298 kb on - strand, within Psyr_0940at 1076.298 kb on - strand, within Psyr_0940at 1076.298 kb on - strand, within Psyr_0940at 1076.298 kb on - strand, within Psyr_0940at 1076.298 kb on - strand, within Psyr_0940at 1076.298 kb on - strand, within Psyr_0940at 1076.301 kb on + strand, within Psyr_0940at 1076.301 kb on + strand, within Psyr_0940at 1076.301 kb on + strand, within Psyr_0940at 1076.301 kb on + strand, within Psyr_0940at 1076.302 kb on - strand, within Psyr_0940at 1076.302 kb on - strand, within Psyr_0940at 1076.336 kb on + strandat 1076.337 kb on - strandat 1076.337 kb on - strandat 1076.396 kb on - strandat 1076.537 kb on + strandat 1076.537 kb on + strandat 1076.537 kb on + strandat 1076.537 kb on + strandat 1076.537 kb on + strandat 1076.537 kb on + strandat 1076.537 kb on + strandat 1076.537 kb on + strandat 1076.537 kb on + strandat 1076.537 kb on + strandat 1076.537 kb on + strandat 1076.538 kb on - strandat 1076.538 kb on - strandat 1076.538 kb on - strandat 1076.538 kb on - strandat 1076.538 kb on - strandat 1076.612 kb on + strand, within Psyr_0941at 1076.613 kb on - strand, within Psyr_0941at 1076.613 kb on - strand, within Psyr_0941at 1076.738 kb on + strand, within Psyr_0941at 1076.738 kb on + strand, within Psyr_0941at 1076.738 kb on + strand, within Psyr_0941at 1076.738 kb on + strand, within Psyr_0941at 1076.739 kb on - strand, within Psyr_0941at 1076.739 kb on - strand, within Psyr_0941at 1076.739 kb on - strand, within Psyr_0941at 1076.739 kb on - strand, within Psyr_0941at 1076.739 kb on - strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Piperacillin 0.775 ug/ml
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1,075,081 + Psyr_0938 0.52 +1.7
1,075,082 - Psyr_0938 0.52 -0.3
1,075,082 - Psyr_0938 0.52 +0.3
1,075,176 + Psyr_0938 0.60 -0.4
1,075,176 + Psyr_0938 0.60 +0.1
1,075,176 + Psyr_0938 0.60 -1.2
1,075,176 + Psyr_0938 0.60 -0.8
1,075,177 - Psyr_0938 0.60 +0.2
1,075,177 - Psyr_0938 0.60 +0.5
1,075,177 - Psyr_0938 0.60 -0.9
1,075,191 - Psyr_0938 0.61 +0.4
1,075,295 + Psyr_0938 0.70 +0.2
1,075,296 - Psyr_0938 0.70 -0.1
1,075,296 - Psyr_0938 0.70 -0.4
1,075,308 + Psyr_0938 0.71 +1.0
1,075,308 + Psyr_0938 0.71 +1.0
1,075,384 - Psyr_0938 0.77 +0.2
1,075,384 - Psyr_0938 0.77 +1.7
1,075,389 + Psyr_0938 0.77 +0.2
1,075,389 + Psyr_0938 0.77 -0.7
1,075,390 - Psyr_0938 0.78 -1.9
1,075,421 + Psyr_0938 0.80 +0.5
1,075,422 - Psyr_0938 0.80 +0.9
1,075,446 + Psyr_0938 0.82 -0.6
1,075,446 + Psyr_0938 0.82 -0.2
1,075,447 - Psyr_0938 0.82 -0.9
1,075,447 - Psyr_0938 0.82 -0.2
1,075,458 - Psyr_0938 0.83 +0.0
1,075,499 - Psyr_0938 0.87 +0.8
1,075,499 - Psyr_0938 0.87 -1.6
1,075,557 + -1.0
1,075,560 - -1.7
1,075,560 - -2.7
1,075,568 + +0.7
1,075,634 + +0.2
1,075,638 - -0.2
1,075,649 - -1.2
1,075,649 - +0.3
1,075,690 + -0.3
1,075,755 + -2.9
1,075,755 + +0.2
1,075,755 + +0.4
1,075,756 - -0.0
1,075,874 + Psyr_0939 0.25 +0.8
1,075,874 + Psyr_0939 0.25 -0.6
1,075,874 + Psyr_0939 0.25 -0.0
1,075,874 + Psyr_0939 0.25 +0.5
1,075,874 + Psyr_0939 0.25 +0.4
1,075,874 + Psyr_0939 0.25 +1.1
1,075,875 - Psyr_0939 0.26 -0.8
1,075,919 + Psyr_0939 0.38 +0.1
1,075,920 - Psyr_0939 0.38 -1.0
1,075,920 - Psyr_0939 0.38 +0.2
1,075,920 - Psyr_0939 0.38 +0.1
1,075,982 + Psyr_0939 0.55 +0.7
1,076,019 + Psyr_0939 0.66 +0.4
1,076,031 + Psyr_0939 0.69 +0.4
1,076,031 + Psyr_0939 0.69 -0.0
1,076,032 - Psyr_0939 0.69 -0.5
1,076,088 + +1.6
1,076,088 + -0.5
1,076,089 - -0.3
1,076,159 + Psyr_0940 0.32 -1.3
1,076,159 + Psyr_0940 0.32 -0.2
1,076,199 + Psyr_0940 0.45 +0.6
1,076,199 + Psyr_0940 0.45 +1.0
1,076,199 + Psyr_0940 0.45 -0.6
1,076,199 + Psyr_0940 0.45 -0.7
1,076,199 + Psyr_0940 0.45 +0.2
1,076,200 - Psyr_0940 0.45 +0.2
1,076,200 - Psyr_0940 0.45 -1.0
1,076,200 - Psyr_0940 0.45 -0.9
1,076,200 - Psyr_0940 0.45 +0.8
1,076,223 + Psyr_0940 0.53 +0.4
1,076,223 + Psyr_0940 0.53 -0.7
1,076,223 + Psyr_0940 0.53 -0.2
1,076,223 + Psyr_0940 0.53 +0.8
1,076,223 + Psyr_0940 0.53 -0.6
1,076,224 - Psyr_0940 0.53 -1.2
1,076,224 - Psyr_0940 0.53 -1.9
1,076,224 - Psyr_0940 0.53 -0.8
1,076,224 - Psyr_0940 0.53 -1.0
1,076,224 - Psyr_0940 0.53 +0.3
1,076,224 - Psyr_0940 0.53 +0.6
1,076,224 - Psyr_0940 0.53 -0.8
1,076,267 + Psyr_0940 0.68 +0.2
1,076,267 + Psyr_0940 0.68 -0.2
1,076,268 - Psyr_0940 0.68 -1.5
1,076,268 - Psyr_0940 0.68 -1.6
1,076,297 + Psyr_0940 0.78 -0.3
1,076,297 + Psyr_0940 0.78 -1.6
1,076,297 + Psyr_0940 0.78 -0.2
1,076,298 - Psyr_0940 0.78 -0.4
1,076,298 - Psyr_0940 0.78 -1.7
1,076,298 - Psyr_0940 0.78 -0.9
1,076,298 - Psyr_0940 0.78 -1.1
1,076,298 - Psyr_0940 0.78 +0.1
1,076,298 - Psyr_0940 0.78 -0.8
1,076,298 - Psyr_0940 0.78 -0.6
1,076,301 + Psyr_0940 0.79 -0.7
1,076,301 + Psyr_0940 0.79 +1.0
1,076,301 + Psyr_0940 0.79 +2.4
1,076,301 + Psyr_0940 0.79 -0.0
1,076,302 - Psyr_0940 0.79 +1.0
1,076,302 - Psyr_0940 0.79 -0.9
1,076,336 + +1.2
1,076,337 - -0.0
1,076,337 - +1.6
1,076,396 - +0.0
1,076,537 + -1.0
1,076,537 + -1.4
1,076,537 + +0.4
1,076,537 + -0.0
1,076,537 + +0.4
1,076,537 + -1.3
1,076,537 + -2.6
1,076,537 + -0.8
1,076,537 + -0.3
1,076,537 + -0.5
1,076,537 + +0.6
1,076,538 - +0.8
1,076,538 - +0.7
1,076,538 - +0.3
1,076,538 - +1.7
1,076,538 - +1.7
1,076,612 + Psyr_0941 0.11 +1.0
1,076,613 - Psyr_0941 0.11 -0.6
1,076,613 - Psyr_0941 0.11 -0.0
1,076,738 + Psyr_0941 0.22 -0.7
1,076,738 + Psyr_0941 0.22 -1.2
1,076,738 + Psyr_0941 0.22 -1.3
1,076,738 + Psyr_0941 0.22 -0.9
1,076,739 - Psyr_0941 0.23 +1.0
1,076,739 - Psyr_0941 0.23 +0.7
1,076,739 - Psyr_0941 0.23 -0.9
1,076,739 - Psyr_0941 0.23 -1.0
1,076,739 - Psyr_0941 0.23 -0.0
1,076,975 + Psyr_0941 0.44 +0.6
1,076,975 + Psyr_0941 0.44 +1.0
1,076,975 + Psyr_0941 0.44 -0.2
1,076,975 + Psyr_0941 0.44 -0.5
1,076,975 + Psyr_0941 0.44 -0.0
1,076,975 + Psyr_0941 0.44 -0.4
1,076,975 + Psyr_0941 0.44 -0.0
1,076,975 + Psyr_0941 0.44 +0.3
1,076,975 + Psyr_0941 0.44 +0.6
1,076,975 + Psyr_0941 0.44 -0.0
1,076,975 + Psyr_0941 0.44 -0.8
1,076,976 - Psyr_0941 0.44 +0.3
1,076,976 - Psyr_0941 0.44 -0.2
1,076,976 - Psyr_0941 0.44 -1.6
1,076,976 - Psyr_0941 0.44 +0.1
1,076,976 - Psyr_0941 0.44 -0.3
1,076,976 - Psyr_0941 0.44 -0.3
1,076,976 - Psyr_0941 0.44 +1.0
1,076,976 - Psyr_0941 0.44 -0.9
1,076,976 - Psyr_0941 0.44 -1.3
1,076,976 - Psyr_0941 0.44 -0.8

Or see this region's nucleotide sequence