Experiment: KB with Piperacillin 0.775 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0873 and Psyr_0874 are separated by 201 nucleotides Psyr_0874 and Psyr_0875 are separated by 2 nucleotides Psyr_0875 and Psyr_0876 are separated by 20 nucleotides
Psyr_0873: Psyr_0873 - GCN5-related N-acetyltransferase, at 995,840 to 996,403
_0873
Psyr_0874: Psyr_0874 - outer membrane transport energization protein ExbD, at 996,605 to 997,012
_0874
Psyr_0875: Psyr_0875 - outer membrane transport energization protein TonB, at 997,015 to 997,779
_0875
Psyr_0876: Psyr_0876 - TonB-dependent receptor:TonB-dependent receptor, C-terminal, at 997,800 to 1,000,082
_0876
Position (kb) 997
998 Strain fitness (log2 ratio) -2
-1
0
1
2 at 996.075 kb on + strand, within Psyr_0873 at 996.076 kb on - strand, within Psyr_0873 at 996.407 kb on + strand at 996.408 kb on - strand at 996.481 kb on + strand at 996.481 kb on + strand at 996.481 kb on + strand at 996.482 kb on - strand at 996.482 kb on - strand at 996.482 kb on - strand at 996.497 kb on + strand at 996.497 kb on + strand at 996.497 kb on + strand at 996.497 kb on + strand at 996.497 kb on + strand at 996.497 kb on + strand at 996.498 kb on - strand at 996.503 kb on + strand at 996.504 kb on - strand at 996.514 kb on + strand at 996.514 kb on + strand at 996.514 kb on + strand at 996.514 kb on + strand at 996.514 kb on + strand at 996.514 kb on + strand at 996.514 kb on + strand at 996.515 kb on - strand at 996.515 kb on - strand at 996.515 kb on - strand at 996.515 kb on - strand at 996.515 kb on - strand at 996.515 kb on - strand at 996.525 kb on + strand at 996.526 kb on - strand at 996.526 kb on - strand at 996.526 kb on - strand at 996.526 kb on - strand at 996.526 kb on - strand at 996.536 kb on + strand at 996.536 kb on + strand at 996.536 kb on + strand at 996.537 kb on - strand at 996.537 kb on - strand at 996.567 kb on + strand at 996.567 kb on + strand at 996.568 kb on - strand at 996.568 kb on - strand at 996.582 kb on + strand at 996.625 kb on + strand at 996.625 kb on + strand at 996.626 kb on - strand at 996.702 kb on + strand, within Psyr_0874 at 996.702 kb on + strand, within Psyr_0874 at 996.819 kb on + strand, within Psyr_0874 at 996.819 kb on + strand, within Psyr_0874 at 996.820 kb on - strand, within Psyr_0874 at 996.820 kb on - strand, within Psyr_0874 at 996.820 kb on - strand, within Psyr_0874 at 997.018 kb on + strand at 997.018 kb on + strand at 997.018 kb on + strand at 997.018 kb on + strand at 997.018 kb on + strand at 997.018 kb on + strand at 997.018 kb on + strand at 997.018 kb on + strand at 997.019 kb on - strand at 997.019 kb on - strand at 997.019 kb on - strand at 997.019 kb on - strand at 997.019 kb on - strand at 997.034 kb on + strand at 997.034 kb on + strand at 997.034 kb on + strand at 997.035 kb on - strand at 997.035 kb on - strand at 997.211 kb on + strand, within Psyr_0875 at 997.244 kb on + strand, within Psyr_0875 at 997.344 kb on + strand, within Psyr_0875 at 997.493 kb on - strand, within Psyr_0875 at 997.765 kb on + strand at 997.765 kb on + strand at 997.766 kb on - strand at 997.766 kb on - strand at 997.778 kb on - strand at 997.929 kb on + strand at 997.929 kb on + strand at 997.929 kb on + strand at 997.929 kb on + strand at 997.929 kb on + strand at 997.929 kb on + strand at 997.930 kb on - strand at 997.930 kb on - strand at 997.930 kb on - strand at 997.930 kb on - strand at 998.007 kb on - strand at 998.028 kb on + strand at 998.029 kb on - strand, within Psyr_0876 at 998.029 kb on - strand, within Psyr_0876 at 998.029 kb on - strand, within Psyr_0876 at 998.029 kb on - strand, within Psyr_0876 at 998.029 kb on - strand, within Psyr_0876 at 998.160 kb on + strand, within Psyr_0876 at 998.160 kb on + strand, within Psyr_0876 at 998.169 kb on + strand, within Psyr_0876 at 998.169 kb on + strand, within Psyr_0876 at 998.169 kb on + strand, within Psyr_0876 at 998.170 kb on - strand, within Psyr_0876 at 998.346 kb on + strand, within Psyr_0876 at 998.346 kb on + strand, within Psyr_0876 at 998.346 kb on + strand, within Psyr_0876 at 998.346 kb on + strand, within Psyr_0876 at 998.346 kb on + strand, within Psyr_0876 at 998.346 kb on + strand, within Psyr_0876 at 998.346 kb on + strand, within Psyr_0876 at 998.347 kb on - strand, within Psyr_0876 at 998.347 kb on - strand, within Psyr_0876 at 998.347 kb on - strand, within Psyr_0876 at 998.347 kb on - strand, within Psyr_0876 at 998.347 kb on - strand, within Psyr_0876 at 998.347 kb on - strand, within Psyr_0876 at 998.347 kb on - strand, within Psyr_0876 at 998.347 kb on - strand, within Psyr_0876 at 998.523 kb on + strand, within Psyr_0876 at 998.548 kb on - strand, within Psyr_0876 at 998.548 kb on - strand, within Psyr_0876 at 998.646 kb on + strand, within Psyr_0876 at 998.646 kb on + strand, within Psyr_0876 at 998.647 kb on - strand, within Psyr_0876 at 998.647 kb on - strand, within Psyr_0876 at 998.649 kb on + strand, within Psyr_0876 at 998.650 kb on - strand, within Psyr_0876 at 998.650 kb on - strand, within Psyr_0876 at 998.742 kb on + strand, within Psyr_0876 at 998.745 kb on + strand, within Psyr_0876 at 998.745 kb on + strand, within Psyr_0876 at 998.746 kb on - strand, within Psyr_0876 at 998.746 kb on - strand, within Psyr_0876 at 998.746 kb on - strand, within Psyr_0876
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Piperacillin 0.775 ug/ml remove 996,075 + Psyr_0873 0.42 +1.4 996,076 - Psyr_0873 0.42 +0.7 996,407 + +1.0 996,408 - -0.3 996,481 + -0.2 996,481 + +0.8 996,481 + +0.7 996,482 - +1.7 996,482 - -0.7 996,482 - +0.3 996,497 + +0.4 996,497 + +0.5 996,497 + +0.3 996,497 + +0.7 996,497 + -0.1 996,497 + -0.5 996,498 - +1.8 996,503 + -0.1 996,504 - +0.6 996,514 + +1.7 996,514 + -0.7 996,514 + -2.0 996,514 + +1.0 996,514 + +0.4 996,514 + -2.3 996,514 + -0.1 996,515 - -0.3 996,515 - -1.5 996,515 - +0.2 996,515 - -0.1 996,515 - +1.3 996,515 - +1.0 996,525 + +1.2 996,526 - -1.0 996,526 - -1.8 996,526 - +0.3 996,526 - -0.5 996,526 - -0.0 996,536 + -1.5 996,536 + +0.5 996,536 + +0.3 996,537 - -0.4 996,537 - +1.1 996,567 + -0.5 996,567 + -0.5 996,568 - -0.8 996,568 - +0.2 996,582 + -0.1 996,625 + +1.6 996,625 + -0.8 996,626 - +0.1 996,702 + Psyr_0874 0.24 +0.7 996,702 + Psyr_0874 0.24 +0.3 996,819 + Psyr_0874 0.52 -1.0 996,819 + Psyr_0874 0.52 +0.6 996,820 - Psyr_0874 0.53 +0.1 996,820 - Psyr_0874 0.53 -0.1 996,820 - Psyr_0874 0.53 +1.0 997,018 + -1.0 997,018 + +0.3 997,018 + -1.0 997,018 + -0.0 997,018 + -0.2 997,018 + -1.1 997,018 + -0.8 997,018 + +0.9 997,019 - -0.7 997,019 - -0.3 997,019 - -1.0 997,019 - -0.9 997,019 - +0.8 997,034 + +0.9 997,034 + -1.0 997,034 + -0.2 997,035 - +0.1 997,035 - +1.1 997,211 + Psyr_0875 0.26 +0.2 997,244 + Psyr_0875 0.30 -0.5 997,344 + Psyr_0875 0.43 -1.6 997,493 - Psyr_0875 0.62 -1.3 997,765 + -0.0 997,765 + -0.6 997,766 - +0.6 997,766 - +2.0 997,778 - +0.6 997,929 + -0.1 997,929 + +2.6 997,929 + -0.2 997,929 + -0.1 997,929 + -0.0 997,929 + -0.4 997,930 - +1.4 997,930 - -0.5 997,930 - -0.5 997,930 - -0.3 998,007 - +1.1 998,028 + -1.2 998,029 - Psyr_0876 0.10 -0.6 998,029 - Psyr_0876 0.10 -0.4 998,029 - Psyr_0876 0.10 -0.6 998,029 - Psyr_0876 0.10 -1.5 998,029 - Psyr_0876 0.10 -0.3 998,160 + Psyr_0876 0.16 -0.4 998,160 + Psyr_0876 0.16 +0.5 998,169 + Psyr_0876 0.16 -1.1 998,169 + Psyr_0876 0.16 +0.3 998,169 + Psyr_0876 0.16 -0.3 998,170 - Psyr_0876 0.16 -0.3 998,346 + Psyr_0876 0.24 -0.0 998,346 + Psyr_0876 0.24 -0.4 998,346 + Psyr_0876 0.24 +0.3 998,346 + Psyr_0876 0.24 +0.2 998,346 + Psyr_0876 0.24 -0.2 998,346 + Psyr_0876 0.24 -0.0 998,346 + Psyr_0876 0.24 -0.0 998,347 - Psyr_0876 0.24 -1.0 998,347 - Psyr_0876 0.24 +0.4 998,347 - Psyr_0876 0.24 -0.6 998,347 - Psyr_0876 0.24 -0.0 998,347 - Psyr_0876 0.24 +0.1 998,347 - Psyr_0876 0.24 -0.3 998,347 - Psyr_0876 0.24 +0.4 998,347 - Psyr_0876 0.24 +0.2 998,523 + Psyr_0876 0.32 +0.7 998,548 - Psyr_0876 0.33 -1.3 998,548 - Psyr_0876 0.33 -1.1 998,646 + Psyr_0876 0.37 +0.2 998,646 + Psyr_0876 0.37 -0.3 998,647 - Psyr_0876 0.37 -0.4 998,647 - Psyr_0876 0.37 +0.5 998,649 + Psyr_0876 0.37 -0.6 998,650 - Psyr_0876 0.37 -1.3 998,650 - Psyr_0876 0.37 +0.8 998,742 + Psyr_0876 0.41 +1.0 998,745 + Psyr_0876 0.41 +0.6 998,745 + Psyr_0876 0.41 +1.3 998,746 - Psyr_0876 0.41 +0.1 998,746 - Psyr_0876 0.41 +0.2 998,746 - Psyr_0876 0.41 -0.4
Or see this region's nucleotide sequence